Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems.

ecology genetics genomics metabarcoding metagenomics microbial oceanography plankton biogeography

Journal

eLife
ISSN: 2050-084X
Titre abrégé: Elife
Pays: England
ID NLM: 101579614

Informations de publication

Date de publication:
03 08 2022
Historique:
received: 23 02 2022
accepted: 06 06 2022
entrez: 3 8 2022
pubmed: 4 8 2022
medline: 6 8 2022
Statut: epublish

Résumé

Biogeographical studies have traditionally focused on readily visible organisms, but recent technological advances are enabling analyses of the large-scale distribution of microscopic organisms, whose biogeographical patterns have long been debated. Here we assessed the global structure of plankton geography and its relation to the biological, chemical, and physical context of the ocean (the 'seascape') by analyzing metagenomes of plankton communities sampled across oceans during the Oceans are brimming with life invisible to our eyes, a myriad of species of bacteria, viruses and other microscopic organisms essential for the health of the planet. These ‘marine plankton’ are unable to swim against currents and should therefore be constantly on the move, yet previous studies have suggested that distinct species of plankton may in fact inhabit different oceanic regions. However, proving this theory has been challenging; collecting plankton is logistically difficult, and it is often impossible to distinguish between species simply by examining them under a microscope. However, within the last decade, a research schooner called

Autres résumés

Type: plain-language-summary (eng)
Oceans are brimming with life invisible to our eyes, a myriad of species of bacteria, viruses and other microscopic organisms essential for the health of the planet. These ‘marine plankton’ are unable to swim against currents and should therefore be constantly on the move, yet previous studies have suggested that distinct species of plankton may in fact inhabit different oceanic regions. However, proving this theory has been challenging; collecting plankton is logistically difficult, and it is often impossible to distinguish between species simply by examining them under a microscope. However, within the last decade, a research schooner called

Identifiants

pubmed: 35920817
doi: 10.7554/eLife.78129
pii: 78129
pmc: PMC9348854
doi:
pii:

Banques de données

SRA
['PRJEB16766', 'PRJEB4352', 'PRJEB1787', 'PRJEB4419']
figshare
['10.6084/m9.figshare.11303177']

Types de publication

Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Investigateurs

Silvia G Acinas (SG)
Peer Bork (P)
Emmanuel Boss (E)
Chris Bowler (C)
Guy Cochrane (G)
Colomban de Vargas (C)
Gabriel Gorsky (G)
Nigel Grimsley (N)
Lionel Guidi (L)
Pascal Hingamp (P)
Daniele Iudicone (D)
Olivier Jaillon (O)
Stefanie Kandels (S)
Lee Karp-Boss (L)
Eric Karsenti (E)
Fabrice Not (F)
Hiroyuki Ogata (H)
Stéphane Pesant (S)
Jeroen Raes (J)
Christian Sardet (C)
Mike Sieracki (M)
Sabrina Speich (S)
Lars Stemmann (L)
Matthew B Sullivan (MB)
Shinichi Sunagawa (S)
Patrick Wincker (P)

Informations de copyright

© 2022, Richter, Watteaux, Vannier et al.

Déclaration de conflit d'intérêts

DR, RW, TV, JL, PF, GR, NM, NH, GB, OD, TD, AF, SS, RN, CB, DE, FG, LG, KL, EM, JP, SR, SR, CD, SK, MP, SS, SP, JA, JB, CL, EP, PB, SS, FL, LK, CB, MS, EK, MM, IP, PP, PW, Cd, MR, DI, OJ No competing interests declared

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Auteurs

Daniel J Richter (DJ)

Sorbonne Université, CNRS, Station Biologique de Roscoff, UMR7144, ECOMAP, Roscoff, France.
Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta, Barcelona, Spain.

Romain Watteaux (R)

Stazione Zoologica Anton Dohrn, Villa Comunale, Naples, Italy.
CEA, DAM, DIF, F-91297, Arpajon Cedex, France.

Thomas Vannier (T)

Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, CEA, CNRS, Université Evry, Université Paris-Saclay, Evry, France.
Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France.
Aix Marseille Univ., Université de Toulon, CNRS, IRD, MIO UM, Marseille, France.

Jade Leconte (J)

Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, CEA, CNRS, Université Evry, Université Paris-Saclay, Evry, France.
Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France.

Paul Frémont (P)

Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, CEA, CNRS, Université Evry, Université Paris-Saclay, Evry, France.
Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France.

Gabriel Reygondeau (G)

Changing Ocean Research Unit, Institute for the Oceans and Fisheries, University of British Columbia. Aquatic Ecosystems Research Lab, Vancouver, Canada.
Ecology and Evolutionary Biology, Yale University, New Haven, CT, United States.

Nicolas Maillet (N)

Institut pasteur, Université Paris Cité, Bioinformatics and Biostatistics Hub, Paris, France.

Nicolas Henry (N)

Sorbonne Université, CNRS, Station Biologique de Roscoff, UMR7144, ECOMAP, Roscoff, France.
Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France.

Gaëtan Benoit (G)

Univ Rennes, CNRS, Inria, IRISA-UMR 6074, Rennes, France.

Ophélie Da Silva (O)

Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France.
Sorbonne Universités, CNRS, Laboratoire d'Oceanographie de Villefranche, LOV, Villefranche-sur-Mer, France.

Tom O Delmont (TO)

Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, CEA, CNRS, Université Evry, Université Paris-Saclay, Evry, France.
Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France.

Antonio Fernàndez-Guerra (A)

Lundbeck Foundation GeoGenetics Centre, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark.
MARUM, Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany.
Max Planck Institute for Marine Microbiology, Bremen, Germany.

Samir Suweis (S)

Dipartimento di Fisica e Astronomia 'G. Galilei' & CNISM, INFN, Università di Padova, Padova, Italy.

Romain Narci (R)

MaIAGE, INRAE, Université Paris-Saclay, Jouy-en-Josas, France.

Cédric Berney (C)

Sorbonne Université, CNRS, Station Biologique de Roscoff, UMR7144, ECOMAP, Roscoff, France.
Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France.

Damien Eveillard (D)

Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France.
Nantes Université, Ecole Centrale Nantes, CNRS, LS2N, Nantes, France.

Frederick Gavory (F)

Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, CEA, CNRS, Université Evry, Université Paris-Saclay, Evry, France.

Lionel Guidi (L)

Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France.
Sorbonne Universités, CNRS, Laboratoire d'Oceanographie de Villefranche, LOV, Villefranche-sur-Mer, France.

Karine Labadie (K)

Genoscope, Institut de biologie François-Jacob, Commissariat à l'Energie Atomique (CEA), Université Paris-Saclay, Evry, France.

Eric Mahieu (E)

Genoscope, Institut de biologie François-Jacob, Commissariat à l'Energie Atomique (CEA), Université Paris-Saclay, Evry, France.

Julie Poulain (J)

Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, CEA, CNRS, Université Evry, Université Paris-Saclay, Evry, France.
Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France.

Sarah Romac (S)

Sorbonne Université, CNRS, Station Biologique de Roscoff, UMR7144, ECOMAP, Roscoff, France.
Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France.

Simon Roux (S)

Department of Microbiology, The Ohio State University, Columbus, United States.

Céline Dimier (C)

Sorbonne Université, CNRS, Station Biologique de Roscoff, UMR7144, ECOMAP, Roscoff, France.
Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France.

Stefanie Kandels (S)

Structural and Computational Biology, European Molecular Biology Laboratory, Heidelberg, Germany.
Directors' Research European Molecular Biology Laboratory, Heidelberg, Germany.

Marc Picheral (M)

Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France.
Sorbonne Universités, CNRS, Laboratoire d'Oceanographie de Villefranche, LOV, Villefranche-sur-Mer, France.

Sarah Searson (S)

Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France.
Sorbonne Universités, CNRS, Laboratoire d'Oceanographie de Villefranche, LOV, Villefranche-sur-Mer, France.

Stéphane Pesant (S)

MARUM, Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany.
PANGAEA, Data Publisher for Earth and Environmental Science, University of Bremen, Bremen, Germany.

Jean-Marc Aury (JM)

Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, CEA, CNRS, Université Evry, Université Paris-Saclay, Evry, France.

Jennifer R Brum (JR)

Department of Microbiology, The Ohio State University, Columbus, United States.
Department of Oceanography and Coastal Sciences, Louisiana State University, Baton Rouge, United States.

Claire Lemaitre (C)

Univ Rennes, CNRS, Inria, IRISA-UMR 6074, Rennes, France.

Eric Pelletier (E)

Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, CEA, CNRS, Université Evry, Université Paris-Saclay, Evry, France.
Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France.

Peer Bork (P)

Structural and Computational Biology, European Molecular Biology Laboratory, Heidelberg, Germany.
Yonsei Frontier Lab, Yonsei University, Seoul, Republic of Korea.
Department of Bioinformatics, Biocenter, University of Würzburg, Würzburg, Germany.

Shinichi Sunagawa (S)

Structural and Computational Biology, European Molecular Biology Laboratory, Heidelberg, Germany.
Institute of Microbiology, Department of Biology, ETH Zurich, Vladimir-Prelog-Weg, Zurich, Switzerland.

Fabien Lombard (F)

Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France.
Sorbonne Universités, CNRS, Laboratoire d'Oceanographie de Villefranche, LOV, Villefranche-sur-Mer, France.
Institut Universitaire de France (IUF), Paris, France.

Lee Karp-Boss (L)

School of Marine Sciences, University of Maine, Orono, United States.

Chris Bowler (C)

Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France.
Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France.
Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France.

Matthew B Sullivan (MB)

Department of Microbiology, The Ohio State University, Columbus, United States.
EMERGE Biology Integration Institute, The Ohio State University, Columbus, United States.
Center of Microbiome Science, The Ohio State University, Columbus, United States.
Department of Civil, Environmental and Geodetic Engineering, The Ohio State University, Columbus, United States.

Eric Karsenti (E)

Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France.
Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France.
Directors' Research European Molecular Biology Laboratory, Heidelberg, Germany.

Mahendra Mariadassou (M)

MaIAGE, INRAE, Université Paris-Saclay, Jouy-en-Josas, France.

Ian Probert (I)

Sorbonne Université, CNRS, Station Biologique de Roscoff, UMR7144, ECOMAP, Roscoff, France.
Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France.

Pierre Peterlongo (P)

Univ Rennes, CNRS, Inria, IRISA-UMR 6074, Rennes, France.

Patrick Wincker (P)

Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, CEA, CNRS, Université Evry, Université Paris-Saclay, Evry, France.
Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France.

Colomban de Vargas (C)

Sorbonne Université, CNRS, Station Biologique de Roscoff, UMR7144, ECOMAP, Roscoff, France.
Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France.

Maurizio Ribera d'Alcalà (M)

Stazione Zoologica Anton Dohrn, Villa Comunale, Naples, Italy.

Daniele Iudicone (D)

Stazione Zoologica Anton Dohrn, Villa Comunale, Naples, Italy.

Olivier Jaillon (O)

Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, CEA, CNRS, Université Evry, Université Paris-Saclay, Evry, France.
Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France.

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