Microbial Type IA Topoisomerase C-Terminal Domain Sequence Motifs, Distribution and Combination.
Top3
TopA
topoisomerase
type IA
zf-CCHC
zf-GRF
zinc fingers
Journal
International journal of molecular sciences
ISSN: 1422-0067
Titre abrégé: Int J Mol Sci
Pays: Switzerland
ID NLM: 101092791
Informations de publication
Date de publication:
05 Aug 2022
05 Aug 2022
Historique:
received:
30
06
2022
revised:
31
07
2022
accepted:
02
08
2022
entrez:
12
8
2022
pubmed:
13
8
2022
medline:
16
8
2022
Statut:
epublish
Résumé
Type IA topoisomerases have highly conserved catalytic N-terminal domains for the cleaving and rejoining of a single DNA/RNA strand that have been extensively characterized. In contrast, the C-terminal region has been less covered. Two major types of small tandem C-terminal domains, Topo_C_ZnRpt (containing C4 zinc finger) and Topo_C_Rpt (without cysteines) were initially identified in
Identifiants
pubmed: 35955842
pii: ijms23158709
doi: 10.3390/ijms23158709
pmc: PMC9369019
pii:
doi:
Substances chimiques
DNA
9007-49-2
DNA Topoisomerases, Type I
EC 5.99.1.2
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : NIGMS NIH HHS
ID : R01 GM054226
Pays : United States
Organisme : NIGMS NIH HHS
ID : R35 GM139817
Pays : United States
Organisme : NIH HHS
ID : R35GM139817
Pays : United States
Références
Nucleic Acids Res. 2017 Nov 16;45(20):11908-11924
pubmed: 28981718
Cell. 2011 Nov 23;147(5):1080-91
pubmed: 22078496
Genes (Basel). 2020 Feb 27;11(3):
pubmed: 32120891
Biochem Biophys Res Commun. 2019 Aug 20;516(2):333-338
pubmed: 31204053
Biochem Biophys Res Commun. 1998 Oct 20;251(2):509-14
pubmed: 9792804
Genome Res. 2004 Jun;14(6):1188-90
pubmed: 15173120
Acta Crystallogr D Struct Biol. 2019 Oct 1;75(Pt 10):861-877
pubmed: 31588918
Nucleic Acids Res. 2017 Feb 28;45(4):1860-1871
pubmed: 27965412
Nat Struct Mol Biol. 2007 Oct;14(10):959-67
pubmed: 17828277
Nat Struct Mol Biol. 2014 Mar;21(3):261-8
pubmed: 24509834
Sci Rep. 2017 Feb 08;7:42123
pubmed: 28176834
Nucleic Acids Res. 2016 Jul 27;44(13):6335-49
pubmed: 27257063
Nucleic Acids Res. 2018 Aug 21;46(14):7296-7308
pubmed: 29905859
J Mol Biol. 2016 Jan 16;428(1):182-193
pubmed: 26655023
Nucleic Acids Res. 2020 May 7;48(8):4448-4462
pubmed: 32232337
Proc Natl Acad Sci U S A. 2010 Aug 24;107(34):15045-50
pubmed: 20696927
Nucleic Acids Res. 2021 Jan 11;49(1):568-583
pubmed: 33332555
J Biol Chem. 1996 Apr 12;271(15):9039-45
pubmed: 8621552
Cell. 1989 Jul 28;58(2):409-19
pubmed: 2546682
J Biol Chem. 1988 Nov 5;263(31):15857-9
pubmed: 2846526
Front Microbiol. 2018 Mar 21;9:503
pubmed: 29619017
Nucleic Acids Res. 2009 Feb;37(3):693-701
pubmed: 19106140
J Mol Biol. 2000 Jun 23;299(5):1165-77
pubmed: 10873443
Molecules. 2020 Oct 17;25(20):
pubmed: 33080770
Nucleic Acids Res. 2014 Oct;42(18):11657-67
pubmed: 25232096
Nucleic Acids Res. 1999 Oct 15;27(20):4050-8
pubmed: 10497270
J Mol Biol. 2017 Sep 15;429(19):2931-2942
pubmed: 28843989
Nucleic Acids Res. 2013 Aug;41(15):7462-71
pubmed: 23771144
Biochemistry. 2006 May 2;45(17):5517-26
pubmed: 16634633
Science. 1998 Jan 16;279(5349):384-8
pubmed: 9430589
Methods Mol Biol. 2018;1703:1-20
pubmed: 29177730
Nature. 2021 Aug;596(7873):583-589
pubmed: 34265844
Microbiol Spectr. 2017 Sep;5(5):
pubmed: 28917057
Biochemistry. 1995 Jun 13;34(23):7622-8
pubmed: 7779808
Proc Natl Acad Sci U S A. 2011 Apr 26;108(17):6939-44
pubmed: 21482796
J Biol Chem. 2003 Aug 15;278(33):30705-10
pubmed: 12788950
Nat Commun. 2017 Mar 31;8:14936
pubmed: 28361879
Nucleic Acids Res. 2015 Dec 15;43(22):11031-46
pubmed: 26490962
J Biol Chem. 1998 May 29;273(22):13925-32
pubmed: 9593741
Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):486-501
pubmed: 20383002
Protein Sci. 1993 Jan;2(1):3-19
pubmed: 8443588
RNA Biol. 2021 Dec;18(12):2107-2126
pubmed: 33787465
J Biol Chem. 1988 Sep 15;263(26):13366-73
pubmed: 2843517
J Biol Chem. 2020 Nov 13;295(46):15566-15575
pubmed: 32878989
J Mol Biol. 2006 May 19;358(5):1328-40
pubmed: 16600296
Proc Natl Acad Sci U S A. 2017 Jan 10;114(2):304-309
pubmed: 28028224
Nucleic Acids Res. 2022 Jun 10;50(10):5652-5671
pubmed: 35639927
BMC Bioinformatics. 2004 Jan 21;5:7
pubmed: 14736340
J Biol Chem. 2020 May 15;295(20):7138-7153
pubmed: 32277049
Biochemistry. 1990 Jan 16;29(2):329-40
pubmed: 2105740
Proc Natl Acad Sci U S A. 2011 May 31;108(22):9166-71
pubmed: 21536894
Curr Biol. 2021 Apr 26;31(8):1653-1665.e5
pubmed: 33607033
Nat Commun. 2019 Nov 6;10(1):5042
pubmed: 31695039
RNA Biol. 2017 Jul 3;14(7):854-864
pubmed: 28534707
Nucleic Acids Res. 2004 Mar 19;32(5):1792-7
pubmed: 15034147