Gabi wheat a panel of European elite lines as central stock for wheat genetic research.
Journal
Scientific data
ISSN: 2052-4463
Titre abrégé: Sci Data
Pays: England
ID NLM: 101640192
Informations de publication
Date de publication:
02 09 2022
02 09 2022
Historique:
received:
07
03
2022
accepted:
18
08
2022
entrez:
2
9
2022
pubmed:
3
9
2022
medline:
9
9
2022
Statut:
epublish
Résumé
In plant sciences, curation and availability of interoperable phenotypic and genomic data is still in its infancy and represents an obstacle to rapid scientific discoveries in this field. To that end, supplementing the efforts being made to generate open access wheat genome, pan wheat genome and other bioinformatic resources, we present the GABI-WHEAT panel of elite European cultivars comprising 358 winter and 14 summer wheat varieties released between 1975 to 2007. The panel has been genotyped with SNP arrays of increasing density to investigate several important agronomic, quality and disease resistance traits. The robustness of investigated traits and interoperability of genomic and phenotypic data was assessed in the current publication with the aim to transform this panel into a public data resource for future genetic research in wheat. Consecutively, the phenotypic data was formatted to comply with FAIR principles and linked to online databases to substantiate panel origin information and quality. Thus, we were able to make a valuable resource available for plant science in a sustainable way.
Identifiants
pubmed: 36056030
doi: 10.1038/s41597-022-01651-5
pii: 10.1038/s41597-022-01651-5
pmc: PMC9440043
doi:
Types de publication
Dataset
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
538Subventions
Organisme : Bundesministerium für Ernährung und Landwirtschaft (Federal Ministry of Food and Agriculture)
ID : 28DK131A20
Organisme : Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research)
ID : 031B0880A
Organisme : Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research)
ID : 0315067
Organisme : Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research)
ID : 0315947
Organisme : Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research)
ID : 0315949
Organisme : Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research)
ID : 0315067
Organisme : Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research)
ID : 0315947
Organisme : Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research)
ID : 0315949
Informations de copyright
© 2022. The Author(s).
Références
Nat Genet. 2012 Jan 27;44(2):121-6
pubmed: 22281772
Sci Rep. 2020 Jul 27;10(1):12541
pubmed: 32719416
Front Plant Sci. 2018 Aug 17;9:1195
pubmed: 30174678
Plant Genome. 2019 Mar;12(1):
pubmed: 30951099
Heredity (Edinb). 2020 Dec;125(6):396-416
pubmed: 32616877
New Phytol. 2020 Jul;227(1):260-273
pubmed: 32171029
J Exp Bot. 2017 Jul 10;68(15):4089-4101
pubmed: 28922760
BMC Genomics. 2015 Mar 11;16:168
pubmed: 25886991
Genes (Basel). 2021 Mar 27;12(4):
pubmed: 33801723
J Sci Food Agric. 2020 May;100(7):3120-3125
pubmed: 32086812
Theor Appl Genet. 2021 Jun;134(6):1771-1785
pubmed: 33715023
Plant Biotechnol J. 2017 Mar;15(3):390-401
pubmed: 27627182
Plant Biotechnol J. 2014 Aug;12(6):787-96
pubmed: 24646323
Food Chem. 2021 May 30;345:128683
pubmed: 33310560
Front Plant Sci. 2014 May 20;5:217
pubmed: 24904613
PLoS One. 2014 Nov 18;9(11):e113287
pubmed: 25405621
PLoS One. 2013;8(2):e57500
pubmed: 23451238
Front Plant Sci. 2020 Feb 25;11:150
pubmed: 32158459
Plant Phenomics. 2019 Sep 29;2019:3285904
pubmed: 33313526
Genetics. 2015 Oct;201(2):759-68
pubmed: 26219298
New Phytol. 2020 May;226(3):879-890
pubmed: 31917858
Front Plant Sci. 2015 Sep 01;6:644
pubmed: 26388877
J Dairy Sci. 2008 Nov;91(11):4414-23
pubmed: 18946147
Genetics. 2014 Oct;198(2):483-95
pubmed: 25009151