Progress and Challenges in Archaeal Molecular Biology.

Archaea / genetics Genome Molecular Biology Proteome Systems Biology / methods
Archaea Central dogma Molecular machines Multiomics

Journal

Methods in molecular biology (Clifton, N.J.)
ISSN: 1940-6029
Titre abrégé: Methods Mol Biol
Pays: United States
ID NLM: 9214969

Informations de publication

Date de publication:
2022
Historique:
entrez: 20 9 2022
pubmed: 21 9 2022
medline: 24 9 2022
Statut: ppublish

Résumé

Archaea are a key feature of the terran biosphere. Since their early characterization in the 1970s, we have learned much about the fascinating organism, most recently by applying genome-, transcriptome-, proteome-, and metabolome-scale methods. This chapter describes seminal contributions that elaborate on the study of archaeal biology at the systems level.

Identifiants

DOI: 10.1007/978-1-0716-2445-6_12 PMID: 36125751
pubmed: 36125751
doi: 10.1007/978-1-0716-2445-6_12
doi:

Substances chimiques

Proteome 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

205-207

Informations de copyright

© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Références

Crick F (1970) Central dogma of molecular biology. Nature 227(5258):561–563. https://doi.org/10.1038/227561a0
doi: 10.1038/227561a0 pubmed: 4913914
Watson JD, Crick FH (1953) Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid. Nature 171(4356):737–738. https://doi.org/10.1038/171737a0
doi: 10.1038/171737a0 pubmed: 13054692
Woese CR, Fox GE (1977) Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proc Natl Acad Sci U S A 74(11):5088–5090. https://doi.org/10.1073/pnas.74.11.5088
doi: 10.1073/pnas.74.11.5088 pubmed: 270744 pmcid: 432104
Eme L, Spang A, Lombard J, Stairs CW, Ettema TJG (2017) Archaea and the origin of eukaryotes. Nat Rev Microbiol 15(12):711–723. https://doi.org/10.1038/nrmicro.2017.133
doi: 10.1038/nrmicro.2017.133 pubmed: 29123225
Imachi H, Nobu MK, Nakahara N, Morono Y, Ogawara M, Takaki Y, Takano Y, Uematsu K, Ikuta T, Ito M, Matsui Y, Miyazaki M, Murata K, Saito Y, Sakai S, Song C, Tasumi E, Yamanaka Y, Yamaguchi T, Kamagata Y, Tamaki H, Takai K (2020) Isolation of an archaeon at the prokaryote-eukaryote interface. Nature 577(7791):519–525. https://doi.org/10.1038/s41586-019-1916-6
doi: 10.1038/s41586-019-1916-6 pubmed: 31942073 pmcid: 7015854
Akil C, Tran LT, Orhant-Prioux M, Baskaran Y, Manser E, Blanchoin L, Robinson RC (2020) Insights into the evolution of regulated actin dynamics via characterization of primitive gelsolin/cofilin proteins from Asgard archaea. Proc Natl Acad Sci U S A 117(33):19904–19913. https://doi.org/10.1073/pnas.2009167117
doi: 10.1073/pnas.2009167117 pubmed: 32747565 pmcid: 7444086
Higuchi A, Shihoya W, Konno M, Ikuta T, Kandori H, Inoue K, Nureki O (2021) Crystal structure of schizorhodopsin reveals mechanism of inward proton pumping. Proc Natl Acad Sci U S A 118(14):e2016328118. https://doi.org/10.1073/pnas.2016328118
doi: 10.1073/pnas.2016328118 pubmed: 33790007 pmcid: 8040798
Lu Z, Fu T, Li T, Liu Y, Zhang S, Li J, Dai J, Koonin EV, Li G, Chu H, Li M (2020) Coevolution of eukaryote-like Vps4 and ESCRT-III subunits in the Asgard archaea. mBio 11(3):e00417-20. https://doi.org/10.1128/mBio.00417-20
doi: 10.1128/mBio.00417-20 pubmed: 32430468 pmcid: 7240154
Sivabalasarma S, Wetzel H, Nussbaum P, van der Does C, Beeby M, Albers SV (2020) Analysis of cell-cell bridges in Haloferax volcanii using electron Cryo-tomography reveal a continuous cytoplasm and S-layer. Front Microbiol 11:612239. https://doi.org/10.3389/fmicb.2020.612239
doi: 10.3389/fmicb.2020.612239 pubmed: 33519769
Rhee HS, Pugh BF (2012) ChIP-exo method for identifying genomic location of DNA-binding proteins with near-single-nucleotide accuracy. Curr Protoc Mol Biol. Chapter 21:Unit 21 24. https://doi.org/10.1002/0471142727.mb2124s100
Borlin CS, Bergenholm D, Holland P, Nielsen J (2019) A bioinformatic pipeline to analyze ChIP-exo datasets. Biol Methods Protoc 4(1):bpz011. https://doi.org/10.1093/biomethods/bpz011
doi: 10.1093/biomethods/bpz011 pubmed: 32395628 pmcid: 7200897

Auteurs

Finn Werner (F)

RNAP laboratory, Institute of Structural and Molecular Biology, University College London, London, UK. f.werner@ucl.ac.uk.

Articles similaires

SALINITY-Induced Changes in Diversity, Stability, and Functional Profiles of Microbial Communities in Different Saline Lakes in Arid Areas.

Lei Gao, Manik Prabhu Narsing Rao, Yong-Hong Liu et al.
1.00
Lakes Salinity Archaea Bacteria Microbiota

Proteomic analysis identified proteins that are differentially expressed in the flavonoid and carotenoid biosynthetic pathways of Camellia Nitidissima flowers.

Xing-Wen Zhou, Xiao-Xia Ye, Bao-Jian Ye et al.
1.00
Camellia Flowers Carotenoids Plant Proteins Flavonoids

Brain malformations and seizures by impaired chaperonin function of TRiC.

Florian Kraft, Piere Rodriguez-Aliaga, Weimin Yuan et al.
1.00
Humans Chaperonin Containing TCP-1 Brain Seizures Protein Folding

Chromosome-level genome assembly and annotation of the skinnycheek lanternfish Benthosema ptertum.

Qiaohong Liu, Xiaoying Cao, Lisheng Wu et al.
1.00
Animals Genome Fishes Chromosomes Molecular Sequence Annotation

Classifications MeSH

questionsmedicales.fr › Archéobactéries › Progress and Challenges in Archaeal Molecular Biology.
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Progress and Challenges in Archaeal Molecular Biology.
questionsmedicales.fr › Disciplines des sciences naturelles › Chimie › Biochimie › Biologie moléculaire › Progress and Challenges in Archaeal Molecular Biology.
questionsmedicales.fr › Acides aminés, peptides et protéines › Protéines › Protéome › Progress and Challenges in Archaeal Molecular Biology.
questionsmedicales.fr › Disciplines des sciences naturelles › Disciplines des sciences biologiques › Biologie › Biologie des systèmes › Progress and Challenges in Archaeal Molecular Biology.