X-ray fluorescence holography of biological metal sites: Application to myoglobin.


Journal

Biochemical and biophysical research communications
ISSN: 1090-2104
Titre abrégé: Biochem Biophys Res Commun
Pays: United States
ID NLM: 0372516

Informations de publication

Date de publication:
20 12 2022
Historique:
received: 27 09 2022
accepted: 01 10 2022
pubmed: 30 10 2022
medline: 15 11 2022
entrez: 29 10 2022
Statut: ppublish

Résumé

X-ray fluorescence holography (XFH) is a relatively new technique capable of providing unique three-dimensional structural information around specific atoms that act as a light source in crystalline samples. So far, XFH has typically been applied to inorganic materials such as dopants in metals and semiconductors. Here, we investigate the possibility of using XFH to visualize the metal active site in sperm whale myoglobin (Mb), a monomeric oxygen storage heme protein. We demonstrate that the atomic images reconstructed from the hologram data of crystals of carbonmonoxy myoglobin (MbCO) are moderately consistent with the crystal structure, which is also determined in this study by X-ray crystallography in the near-atomic resolution, as well as simulation results. These results open up a new avenue for the application of XFH to local atomic and electronic structure imaging of metal-sites in biomolecules.

Identifiants

pubmed: 36308907
pii: S0006-291X(22)01388-2
doi: 10.1016/j.bbrc.2022.10.003
pii:
doi:

Substances chimiques

Myoglobin 0
Heme 42VZT0U6YR
Metals 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

277-282

Informations de copyright

Copyright © 2022 Elsevier Inc. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Auteurs

Ayana Sato-Tomita (A)

Division of Biophysics, Department of Physiology, Jichi Medical University, Yakushiji, Shimotsuke, Tochigi, 329-0498, Japan. Electronic address: ayana.sato@jichi.ac.jp.

Artoni Kevin R Ang (AKR)

Department of Physical Science and Engineering, Nagoya Institute of Technology, Gokiso, Showa, Nagoya, 466-8555, Japan.

Koji Kimura (K)

Department of Physical Science and Engineering, Nagoya Institute of Technology, Gokiso, Showa, Nagoya, 466-8555, Japan.

Riho Marumi (R)

Department of Physical Science and Engineering, Nagoya Institute of Technology, Gokiso, Showa, Nagoya, 466-8555, Japan.

Naohisa Happo (N)

Department of Computer and Network Engineering, Graduate School of Information Sciences, Hiroshima City University, Asa-Minami-Ku, Hiroshima, 731-3194, Japan.

Tomohiro Matsushita (T)

Graduate School of Science and Technology, Nara Institute of Science and Technology (NAIST), Ikoma, Nara, 630-0192, Japan.

Sam-Yong Park (SY)

Drug Design Laboratory, Graduate School of Medical Life Science, Yokohama City University, Tsurumi, Yokohama, 230-0045, Japan.

Naoya Shibayama (N)

Division of Biophysics, Department of Physiology, Jichi Medical University, Yakushiji, Shimotsuke, Tochigi, 329-0498, Japan.

Yuji C Sasaki (YC)

Department of Advanced Material Science, Graduate School of Frontier Science, The University of Tokyo, Kashiwanoha, Kashiwa, Chiba, 277-8561, Japan.

Kouichi Hayashi (K)

Department of Physical Science and Engineering, Nagoya Institute of Technology, Gokiso, Showa, Nagoya, 466-8555, Japan; Japan Synchrotron Radiation Research Institute, SPring-8, Kouto, Sayo, 679-5198, Japan. Electronic address: hayashi.koichi@nitech.ac.jp.

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