Coupled C, H, N, S and Fe biogeochemical cycles operating in the continental deep subsurface of the Iberian Pyrite Belt.


Journal

Environmental microbiology
ISSN: 1462-2920
Titre abrégé: Environ Microbiol
Pays: England
ID NLM: 100883692

Informations de publication

Date de publication:
02 2023
Historique:
received: 17 11 2022
accepted: 23 11 2022
pubmed: 2 12 2022
medline: 14 2 2023
entrez: 1 12 2022
Statut: ppublish

Résumé

Microbial activity is a major contributor to the biogeochemical cycles that make up the life support system of planet Earth. A 613 m deep geomicrobiological perforation and a systematic multi-analytical characterization revealed an unexpected diversity associated with the rock matrix microbiome that operates in the subsurface of the Iberian Pyrite Belt (IPB). Members of 1 class and 16 genera were deemed the most representative microorganisms of the IPB deep subsurface and selected for a deeper analysis. The use of fluorescence in situ hybridization allowed not only the identification of microorganisms but also the detection of novel activities in the subsurface such as anaerobic ammonium oxidation (ANAMMOX) and anaerobic methane oxidation, the co-occurrence of microorganisms able to maintain complementary metabolic activities and the existence of biofilms. The use of enrichment cultures sensed the presence of five different complementary metabolic activities along the length of the borehole and isolated 29 bacterial species. Genomic analysis of nine isolates identified the genes involved in the complete operation of the light-independent coupled C, H, N, S and Fe biogeochemical cycles. This study revealed the importance of nitrate reduction microorganisms in the oxidation of iron in the anoxic conditions existing in the subsurface of the IPB.

Identifiants

pubmed: 36453153
doi: 10.1111/1462-2920.16291
pmc: PMC10107794
doi:

Substances chimiques

pyrite 132N09W4PR
Iron E1UOL152H7

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

428-453

Informations de copyright

© 2022 The Authors. Environmental Microbiology published by Applied Microbiology International and John Wiley & Sons Ltd.

Références

Front Microbiol. 2020 Dec 14;11:543260
pubmed: 33381087
Int J Syst Bacteriol. 1998 Jan;48 Pt 1:311-5
pubmed: 9542102
Astrobiology. 2012 Mar;12(3):231-46
pubmed: 22468887
Geobiology. 2014 Jan;12(1):34-47
pubmed: 24237661
Front Microbiol. 2021 Apr 14;12:617280
pubmed: 33935987
Science. 1926 Jan 1;63(1618):21-4
pubmed: 17838563
Appl Environ Microbiol. 2013 Sep;79(17):5112-20
pubmed: 23793624
Proc Natl Acad Sci U S A. 2018 Oct 16;115(42):10702-10707
pubmed: 30275328
Res Microbiol. 2016 Sep;167(7):539-45
pubmed: 27349346
Nucleic Acids Res. 2014 Jan;42(Database issue):D459-71
pubmed: 24225315
Microbiol Resour Announc. 2019 Apr 18;8(16):
pubmed: 31000538
Appl Microbiol Biotechnol. 2013 Sep;97(17):7529-41
pubmed: 23720034
Front Microbiol. 2022 Mar 01;13:826048
pubmed: 35300483
Appl Environ Microbiol. 2001 Dec;67(12):5750-60
pubmed: 11722932
ISME J. 2020 May;14(5):1260-1272
pubmed: 32047278
ISME J. 2014 Jan;8(1):126-38
pubmed: 23949662
Nat Commun. 2020 Apr 24;11(1):1988
pubmed: 32332762
Proc Natl Acad Sci U S A. 2017 Jan 10;114(2):E161-E170
pubmed: 28007984
Science. 2018 Aug 3;361(6401):490-493
pubmed: 30045881
Front Microbiol. 2022 Mar 28;13:800219
pubmed: 35418959
Front Microbiol. 2018 Mar 20;9:513
pubmed: 29616015
PLoS One. 2011;6(10):e26161
pubmed: 22028825
Appl Environ Microbiol. 1996 Sep;62(9):3405-12
pubmed: 8795233
Astrobiology. 2016 Jan;16(1):89-117
pubmed: 26741054
Nucleic Acids Res. 2004 Feb 25;32(4):1363-71
pubmed: 14985472
ISME J. 2015 Jan;9(1):68-80
pubmed: 25012900
J Bacteriol. 2011 Jul;193(13):3257-64
pubmed: 21572002
Nat Rev Microbiol. 2008 Apr;6(4):320-6
pubmed: 18340342
Microbiology (Reading). 2023 Jan;169(1):
pubmed: 36748549
Appl Environ Microbiol. 2005 Feb;71(2):1084-8
pubmed: 15691970
Microb Ecol. 2009 Nov;58(4):786-807
pubmed: 19568805
Microb Ecol. 1994 Jan;28(3):335-49
pubmed: 24186553
Int Microbiol. 2018 Jun;21(1-2):3-14
pubmed: 30810923
Environ Microbiol. 2023 Feb;25(2):428-453
pubmed: 36453153
Proc Natl Acad Sci U S A. 2016 Dec 6;113(49):E7927-E7936
pubmed: 27872277
Microbiol Resour Announc. 2020 Oct 1;9(40):
pubmed: 33004443
Genome Announc. 2017 Apr 27;5(17):
pubmed: 28450513
J Mol Evol. 1979 Dec;14(1-3):223-32
pubmed: 522154
Methods Mol Biol. 2002;179:29-42
pubmed: 11692872
Environ Microbiol. 2021 Jul;23(7):3913-3922
pubmed: 33973338
Microbiol Resour Announc. 2018 Oct 25;7(16):
pubmed: 30533741
Bioinformatics. 2012 Jul 15;28(14):1823-9
pubmed: 22556368
Nat Methods. 2012 Jun 28;9(7):676-82
pubmed: 22743772
Annu Rev Microbiol. 2009;63:311-34
pubmed: 19575572
Nucleic Acids Res. 2007;35(21):7188-96
pubmed: 17947321
FEMS Microbiol Lett. 2000 Apr 1;185(1):9-16
pubmed: 10731600
Appl Environ Microbiol. 2005 Jun;71(6):3213-27
pubmed: 15933024
Nucleic Acids Res. 2013 Jan;41(Database issue):D590-6
pubmed: 23193283
Environ Sci Technol. 2012 Feb 7;46(3):1439-46
pubmed: 22201257
ISME J. 2016 Mar;10(3):730-41
pubmed: 26325359
PLoS One. 2012;7(3):e32543
pubmed: 22470420
Life (Basel). 2020 Jan 04;10(1):
pubmed: 31947979
FEMS Microbiol Ecol. 2011 Aug;77(2):295-309
pubmed: 21488910
Icarus. 1992;95:300-8
pubmed: 11539823
Proc Natl Acad Sci U S A. 2013 Sep 17;110(38):15336-41
pubmed: 24003156
Science. 1997 Dec 5;278(5344):1752-8
pubmed: 9388169
Front Microbiol. 2017 Feb 07;8:56
pubmed: 28223966
Microbiol Resour Announc. 2019 Aug 8;8(32):
pubmed: 31395626
Sci Rep. 2018 Jan 24;8(1):1538
pubmed: 29367593
FEMS Microbiol Ecol. 2012 Jul;81(1):2-12
pubmed: 22224750
Genome Biol. 2003;4(6):219
pubmed: 12801407
Nature. 2006 Apr 6;440(7085):790-4
pubmed: 16598256
Front Microbiol. 2018 Apr 30;9:840
pubmed: 29780369
ISME J. 2017 Oct;11(10):2319-2333
pubmed: 28644444
Environ Microbiol. 2014 Sep;16(9):2939-52
pubmed: 24354520
PLoS One. 2011;6(12):e27310
pubmed: 22194782
Front Microbiol. 2021 Jun 24;12:668240
pubmed: 34248877
PeerJ. 2016 Oct 18;4:e2584
pubmed: 27781170
Front Microbiol. 2020 Nov 26;11:572104
pubmed: 33324359
Microb Ecol. 2012 Jan;63(1):103-15
pubmed: 21947461
J Bacteriol. 2013 Jul;195(14):3260-8
pubmed: 23687275
Proc Natl Acad Sci U S A. 1992 Jul 1;89(13):6045-9
pubmed: 1631089
Front Microbiol. 2014 Oct 31;5:531
pubmed: 25400621
Environ Microbiol. 2018 Oct;20(10):3462-3483
pubmed: 30058270
Genome Announc. 2016 Sep 29;4(5):
pubmed: 27688325
Astrobiology. 2011 Dec;11(10):969-96
pubmed: 22149750
Appl Environ Microbiol. 1993 May;59(5):1354-60
pubmed: 7685999
Anal Biochem. 1985 Oct;150(1):76-85
pubmed: 3843705
FEMS Microbiol Ecol. 2018 Aug 1;94(8):
pubmed: 29893836
Heliyon. 2018 Apr 16;4(4):e00605
pubmed: 29862366
Nat Rev Microbiol. 2021 Jun;19(6):360-374
pubmed: 33526911
Microb Ecol. 1999 Nov;38(4):307-320
pubmed: 10758178
Front Microbiol. 2011 Jul 19;2:156
pubmed: 21811489
Science. 2002 Mar 15;295(5562):2067-70
pubmed: 11896277
Environ Microbiol. 2008 Apr;10(4):836-50
pubmed: 18248453
Front Microbiol. 2017 Feb 20;8:232
pubmed: 28265265
Int J Syst Evol Microbiol. 2014 Oct;64(Pt 10):3546-3552
pubmed: 25052391
Nucleic Acids Res. 2000 Jan 1;28(1):27-30
pubmed: 10592173
Microorganisms. 2022 Aug 06;10(8):
pubmed: 36014003
Microbiol Resour Announc. 2021 Jan 7;10(1):
pubmed: 33414307
Appl Environ Microbiol. 2003 Aug;69(8):4853-65
pubmed: 12902280
Environ Microbiol. 2003 Nov;5(11):1168-91
pubmed: 14641596
Proc Natl Acad Sci U S A. 2017 Jul 3;114(27):6895-6903
pubmed: 28674200
Astrobiology. 2008 Oct;8(5):1023-47
pubmed: 19105758
Environ Microbiol. 2023 Jan;25(1):147-149
pubmed: 36307896
Sci Rep. 2018 Nov 29;8(1):17459
pubmed: 30498254
Environ Microbiol Rep. 2017 Oct;9(5):501-511
pubmed: 28677247
Nucleic Acids Res. 2016 Feb 29;44(4):e40
pubmed: 26553806
ISME J. 2016 May;10(5):1192-203
pubmed: 26484735
Nature. 2002 Jan 17;415(6869):312-5
pubmed: 11797006
Bioinformatics. 2014 Jul 15;30(14):2068-9
pubmed: 24642063
Front Microbiol. 2022 May 04;13:864895
pubmed: 35602028
Nature. 2002 May 9;417(6885):137
pubmed: 12000949

Auteurs

Ricardo Amils (R)

Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Spain.
Centro de Biología Molecular Severo Ochoa (CSIC-UAM), Universidad Autónoma de Madrid, Madrid, Spain.

Cristina Escudero (C)

Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Spain.
Centro de Biología Molecular Severo Ochoa (CSIC-UAM), Universidad Autónoma de Madrid, Madrid, Spain.

Monike Oggerin (M)

Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Spain.

Fernando Puente Sánchez (F)

Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Spain.

Alejandro Arce Rodríguez (A)

Institute of Microbiology, Technical University Braunschweig, Germany.
Microbial Interactions and Processes Research Group, Helmholtz Centre for Infection Research, Braunschweig, Germany.

David Fernández Remolar (D)

Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Spain.

Nuria Rodríguez (N)

Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Spain.

Miriam García Villadangos (M)

Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Spain.

José Luis Sanz (JL)

Department of Molecular Biology, Universidad Autónoma de Madrid, Madrid, Spain.

Carlos Briones (C)

Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Spain.

Mónica Sánchez-Román (M)

Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Spain.

Felipe Gómez (F)

Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Spain.

Tania Leandro (T)

Centro de Biología Molecular Severo Ochoa (CSIC-UAM), Universidad Autónoma de Madrid, Madrid, Spain.

Mercedes Moreno-Paz (M)

Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Spain.

Olga Prieto-Ballesteros (O)

Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Spain.

Antonio Molina (A)

Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Spain.

Fernando Tornos (F)

Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Spain.

Irene Sánchez-Andrea (I)

Department of Microbiology, Wageningen University, Netherlands.

Kenneth Timmis (K)

Institute of Microbiology, Technical University Braunschweig, Germany.

Dietmar H Pieper (DH)

Microbial Interactions and Processes Research Group, Helmholtz Centre for Infection Research, Braunschweig, Germany.

Victor Parro (V)

Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Spain.

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