The Caulobacter crescentus DciA promotes chromosome replication through topological loading of the DnaB replicative helicase at replication forks.
Journal
Nucleic acids research
ISSN: 1362-4962
Titre abrégé: Nucleic Acids Res
Pays: England
ID NLM: 0411011
Informations de publication
Date de publication:
09 12 2022
09 12 2022
Historique:
accepted:
06
12
2022
revised:
04
11
2022
received:
06
10
2022
pubmed:
10
12
2022
medline:
11
1
2023
entrez:
9
12
2022
Statut:
ppublish
Résumé
The replicative DNA helicase translocates on single-stranded DNA to drive replication forks during chromosome replication. In most bacteria the ubiquitous replicative helicase, DnaB, co-evolved with the accessory subunit DciA, but how they function remains incompletely understood. Here, using the model bacterium Caulobacter crescentus, we demonstrate that DciA plays a prominent role in DNA replication fork maintenance. Cell cycle analyses using a synchronized Caulobacter cell population showed that cells devoid of DciA exhibit a severe delay in fork progression. Biochemical characterization revealed that the DnaB helicase in its default state forms a hexamer that inhibits self-loading onto single-stranded DNA. We found that upon binding to DciA, the DnaB hexamer undergoes conformational changes required for encircling single-stranded DNA, thereby establishing the replication fork. Further investigation of the functional structure of DciA revealed that the C-terminus of DciA includes conserved leucine residues responsible for DnaB binding and is essential for DciA in vivo functions. We propose that DciA stimulates loading of DnaB onto single strands through topological isomerization of the DnaB structure, thereby ensuring fork progression. Given that the DnaB-DciA modules are widespread among eubacterial species, our findings suggest that a common mechanism underlies chromosome replication.
Identifiants
pubmed: 36484102
pii: 6885028
doi: 10.1093/nar/gkac1146
pmc: PMC9825169
doi:
Substances chimiques
Bacterial Proteins
0
DNA, Single-Stranded
0
DnaB Helicases
EC 3.6.4.12
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
12896-12912Informations de copyright
© The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research.
Références
Trends Biochem Sci. 2022 Jul;47(7):620-630
pubmed: 35351361
mBio. 2020 Apr 28;11(2):
pubmed: 32345642
Curr Opin Microbiol. 2016 Oct;33:131-139
pubmed: 27517351
Nature. 2021 Aug;596(7873):583-589
pubmed: 34265844
Nat Commun. 2013;4:2495
pubmed: 24048025
Elife. 2018 Dec 24;7:
pubmed: 30582519
J Biol Chem. 1990 Aug 5;265(22):13297-307
pubmed: 2165499
Mol Cell. 2010 Jan 29;37(2):247-58
pubmed: 20122406
Nucleic Acids Res. 2019 Feb 28;47(4):2101-2112
pubmed: 30534966
Nucleic Acids Res. 2007;35(14):4728-36
pubmed: 17606462
Mol Cell. 2010 Jan 15;37(1):90-101
pubmed: 20129058
Nat Commun. 2016 Nov 10;7:13271
pubmed: 27830752
Genes Genet Syst. 2019 Dec 10;94(5):183-196
pubmed: 31495806
Crit Rev Biochem Mol Biol. 2021 Dec;56(6):621-639
pubmed: 34404299
Appl Environ Microbiol. 2013 Nov;79(21):6795-802
pubmed: 23995928
Microbiol Mol Biol Rev. 2018 Jun 13;82(3):
pubmed: 29898897
Front Microbiol. 2017 Dec 21;8:2496
pubmed: 29312202
J Biol Chem. 2006 Feb 10;281(6):3484-93
pubmed: 16354656
Cell. 2018 Mar 8;172(6):1271-1293
pubmed: 29522747
Nature. 2015 Jul 9;523(7559):236-9
pubmed: 25945741
J Biochem. 2020 Jan 1;167(1):1-14
pubmed: 31665315
J Bacteriol. 1996 Apr;178(7):1829-41
pubmed: 8606155
Mol Microbiol. 2001 Oct;42(1):245-55
pubmed: 11679082
EMBO J. 2002 Jun 17;21(12):3148-59
pubmed: 12065427
J Biol Chem. 1991 Nov 25;266(33):22096-101
pubmed: 1657989
Microbiol Mol Biol Rev. 2010 Mar;74(1):13-41
pubmed: 20197497
J Biol Chem. 1982 Nov 25;257(22):13770-5
pubmed: 6292205
Nucleic Acids Res. 2021 Jun 21;49(11):6569-6586
pubmed: 34107018
J Biol Chem. 1981 May 25;256(10):5253-9
pubmed: 6262325
Front Microbiol. 2018 Nov 26;9:2819
pubmed: 30534115
Nat Rev Microbiol. 2017 Mar;15(3):137-148
pubmed: 28138140
Nucleic Acids Res. 2012 Feb;40(4):1648-65
pubmed: 22053082
J Biol Chem. 2007 Jun 15;282(24):17816-27
pubmed: 17420252
PLoS Genet. 2013;9(9):e1003744
pubmed: 24039597
Cell. 2012 Oct 12;151(2):267-77
pubmed: 23022319
Mol Cell. 2006 Jun 9;22(5):701-7
pubmed: 16762842
mBio. 2021 Jan 26;12(1):
pubmed: 33500340
PLoS One. 2015 Jul 16;10(7):e0133419
pubmed: 26182205
J Bacteriol. 1977 Oct;132(1):294-301
pubmed: 334726
Biochemistry. 1986 Nov 18;25(23):7368-74
pubmed: 3026453
Mol Cell. 2019 Apr 4;74(1):173-184.e4
pubmed: 30797687
Nucleic Acids Res. 2018 Jan 25;46(2):504-519
pubmed: 29202195
PLoS Genet. 2017 Nov 27;13(11):e1007115
pubmed: 29176877
Nucleic Acids Res. 2021 Jul 9;49(12):6804-6816
pubmed: 34139009
Cold Spring Harb Perspect Biol. 2013 Jun 01;5(6):
pubmed: 23613349
Cell. 2013 Apr 11;153(2):438-48
pubmed: 23562643
Curr Opin Microbiol. 2012 Dec;15(6):744-50
pubmed: 23146566
EMBO J. 2001 Sep 3;20(17):4952-63
pubmed: 11532959
Mol Microbiol. 2014 Nov;94(3):580-94
pubmed: 25171231
Front Mol Biosci. 2016 Aug 11;3:39
pubmed: 27563644
Biochemistry. 1999 Aug 24;38(34):10919-28
pubmed: 10460147
Genome Res. 2004 Jun;14(6):1188-90
pubmed: 15173120
Curr Opin Chem Biol. 2011 Oct;15(5):606-13
pubmed: 21856207
Front Microbiol. 2021 Sep 20;12:732270
pubmed: 34616385
Nucleic Acids Res. 2007;35(20):e137
pubmed: 17959646
Nat Rev Microbiol. 2004 Apr;2(4):325-37
pubmed: 15031731
Nucleic Acids Res. 2016 Apr 20;44(7):3288-303
pubmed: 27001508
Mol Cell. 2003 Apr;11(4):1009-20
pubmed: 12718886
Structure. 2012 Mar 7;20(3):554-64
pubmed: 22405014
Nucleic Acids Res. 2019 Jan 8;47(D1):D74-D77
pubmed: 30364951
J Biol Chem. 2020 Aug 7;295(32):11131-11143
pubmed: 32540966
Nat Rev Microbiol. 2010 Mar;8(3):163-70
pubmed: 20157337
Curr Opin Struct Biol. 2018 Dec;53:159-168
pubmed: 30292863
Nat Struct Mol Biol. 2018 Feb;25(2):122-130
pubmed: 29379175
Front Microbiol. 2018 Aug 31;9:2017
pubmed: 30233515
Protein Sci. 2019 Jun;28(6):990-1004
pubmed: 30945375