Rational enzyme design for enabling biocatalytic Baldwin cyclization and asymmetric synthesis of chiral heterocycles.


Journal

Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555

Informations de publication

Date de publication:
19 12 2022
Historique:
received: 30 04 2022
accepted: 05 12 2022
entrez: 19 12 2022
pubmed: 20 12 2022
medline: 22 12 2022
Statut: epublish

Résumé

Chiral heterocyclic compounds are needed for important medicinal applications. We report an in silico strategy for the biocatalytic synthesis of chiral N- and O-heterocycles via Baldwin cyclization modes of hydroxy- and amino-substituted epoxides and oxetanes using the limonene epoxide hydrolase from Rhodococcus erythropolis. This enzyme normally catalyzes hydrolysis with formation of vicinal diols. Firstly, the required shutdown of the undesired natural water-mediated ring-opening is achieved by rational mutagenesis of the active site. In silico enzyme design is then continued with generation of the improved mutants. These variants prove to be versatile catalysts for preparing chiral N- and O-heterocycles with up to 99% conversion, and enantiomeric ratios up to 99:1. Crystal structural data and computational modeling reveal that Baldwin-type cyclizations, catalyzed by the reprogrammed enzyme, are enabled by reshaping the active-site environment that directs the distal RHN and HO-substituents to be intramolecular nucleophiles.

Identifiants

pubmed: 36535947
doi: 10.1038/s41467-022-35468-y
pii: 10.1038/s41467-022-35468-y
pmc: PMC9763437
doi:

Substances chimiques

Epoxide Hydrolases EC 3.3.2.-
Limonene 9MC3I34447

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

7813

Informations de copyright

© 2022. The Author(s).

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Auteurs

Jun-Kuan Li (JK)

Department of Chemistry, Frontiers Science Center for Synthetic Biology (Ministry of Education), Tianjin University, Tianjin, 300072, China.
Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, China.

Ge Qu (G)

Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, China.
National Technology Innovation Center of Synthetic Biology, Tianjin, 300308, China.

Xu Li (X)

Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, China.
National Technology Innovation Center of Synthetic Biology, Tianjin, 300308, China.

Yuchen Tian (Y)

Department of Chemistry, Frontiers Science Center for Synthetic Biology (Ministry of Education), Tianjin University, Tianjin, 300072, China.

Chengsen Cui (C)

Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, China.
National Technology Innovation Center of Synthetic Biology, Tianjin, 300308, China.

Fa-Guang Zhang (FG)

Department of Chemistry, Frontiers Science Center for Synthetic Biology (Ministry of Education), Tianjin University, Tianjin, 300072, China.

Wuyuan Zhang (W)

Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, China.
National Technology Innovation Center of Synthetic Biology, Tianjin, 300308, China.

Jun-An Ma (JA)

Department of Chemistry, Frontiers Science Center for Synthetic Biology (Ministry of Education), Tianjin University, Tianjin, 300072, China. majun_an68@tju.edu.cn.

Manfred T Reetz (MT)

Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, China. reetz@mpi-muelheim.mpg.de.
Biocatalysis Section, Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470, Mülheim an der Ruhr, Germany. reetz@mpi-muelheim.mpg.de.

Zhoutong Sun (Z)

Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, China. sunzht@tib.cas.cn.
National Technology Innovation Center of Synthetic Biology, Tianjin, 300308, China. sunzht@tib.cas.cn.

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