The Next Generation of Microbial Ecology and Its Importance in Environmental Sustainability.

Culturing Environmental sustainability Genomics Microbial communities Restoration ecology Sample preservation

Journal

Microbial ecology
ISSN: 1432-184X
Titre abrégé: Microb Ecol
Pays: United States
ID NLM: 7500663

Informations de publication

Date de publication:
Apr 2023
Historique:
received: 06 12 2022
accepted: 24 01 2023
medline: 5 5 2023
pubmed: 25 2 2023
entrez: 24 2 2023
Statut: ppublish

Résumé

Collectively, we have been reviewers for microbial ecology, genetics and genomics studies that include environmental DNA (eDNA), microbiome studies, and whole bacterial genome biology for Microbial Ecology and other journals for about three decades. Here, we wish to point out trends and point to areas of study that readers, especially those moving into the next generation of microbial ecology research, might learn and consider. In this communication, we are not saying the work currently being accomplished in microbial ecology and restoration biology is inadequate. What we are saying is that a significant milestone in microbial ecology has been reached, and approaches that may have been overlooked or were unable to be completed before should be reconsidered in moving forward into a new more ecological era where restoration of the ecological trajectory of systems has become critical. It is our hope that this introduction, along with the papers that make up this special issue, will address the sense of immediacy and focus needed to move into the next generation of microbial ecology study.

Identifiants

pubmed: 36826587
doi: 10.1007/s00248-023-02185-y
pii: 10.1007/s00248-023-02185-y
pmc: PMC10156817
doi:

Types de publication

Journal Article Review

Langues

eng

Sous-ensembles de citation

IM

Pagination

781-795

Informations de copyright

© 2023. The Author(s).

Références

Genome Biol. 2002;3(2):REVIEWS0003
pubmed: 11864374
Microbiome. 2017 Aug 16;5(1):86
pubmed: 28810907
Proc Natl Acad Sci U S A. 2009 Dec 15;106(50):21208-12
pubmed: 19940248
Nat Med. 2019 Jun;25(6):884-889
pubmed: 31133693
J Microbiol Biol Educ. 2017 Sep 01;18(2):
pubmed: 28861145
Microb Ecol. 2004 Jul;48(1):111-9
pubmed: 15037965
Microb Ecol. 2006 Apr;51(3):365-74
pubmed: 16598638
Mar Pollut Bull. 2018 Sep;134:166-176
pubmed: 28935363
Appl Environ Microbiol. 1999 Jul;65(7):3192-204
pubmed: 10388721
Environ Microbiol. 2006 Apr;8(4):755-8
pubmed: 16584487
Annu Rev Microbiol. 1995;49:711-45
pubmed: 8561477
Syst Appl Microbiol. 1998 Dec;21(4):546-56
pubmed: 9924823
Nat Commun. 2021 Jul 7;12(1):4060
pubmed: 34234115
Appl Environ Microbiol. 2003 Apr;69(4):1980-9
pubmed: 12676673
Proc Biol Sci. 2019 Nov 20;286(1915):20191409
pubmed: 31744434
Restor Ecol. 2017 Sep 24;25(5):668-673
pubmed: 29400359
PLoS One. 2017 Apr 27;12(4):e0176608
pubmed: 28448613
Mol Ecol. 2019 Jan;28(2):407-419
pubmed: 29939447
Nat Commun. 2021 Jul 7;12(1):4059
pubmed: 34234129
Curr Biol. 2019 Mar 4;29(5):R169-R172
pubmed: 30836089
Microorganisms. 2020 Jan 17;8(1):
pubmed: 31963501
Front Microbiol. 2020 Dec 17;11:610001
pubmed: 33391234
Appl Environ Microbiol. 2002 May;68(5):2391-6
pubmed: 11976113
Nat Commun. 2018 Nov 30;9(1):5114
pubmed: 30504855
Proc Natl Acad Sci U S A. 2009 Nov 17;106 Suppl 2:19659-65
pubmed: 19903876
Microb Pathog. 2021 Jan;150:104698
pubmed: 33347961
Annu Rev Microbiol. 1985;39:321-46
pubmed: 3904603
Stud Hist Philos Biol Biomed Sci. 2008 Sep;39(3):314-25
pubmed: 18761283
Appl Environ Microbiol. 2019 Mar 22;85(7):
pubmed: 30683748
Mol Ecol Resour. 2016 May;16(3):673-85
pubmed: 26558345
Front Microbiol. 2021 Apr 27;12:644662
pubmed: 33986735
Microb Ecol. 2009 Jan;57(1):94-103
pubmed: 18587611
Biologist (London). 2002 Jun;49(3):127-30
pubmed: 12097716
Appl Environ Microbiol. 1999 Nov;65(11):5042-9
pubmed: 10543821
Stud Hist Philos Sci. 2021 Jun;87:72-80
pubmed: 34111824
Appl Environ Microbiol. 2002 Aug;68(8):3878-85
pubmed: 12147485
Mar Life Sci Technol. 2020 Sep 8;3(2):132-147
pubmed: 37073336
PLoS One. 2020 Feb 13;15(2):e0228899
pubmed: 32053657
Mol Ecol Resour. 2020 Mar;20(2):404-414
pubmed: 31677222
Appl Environ Microbiol. 2012 Apr;78(8):3010-3
pubmed: 22307300
Appl Environ Microbiol. 2003 Dec;69(12):7210-5
pubmed: 14660368
FEMS Microbiol Ecol. 2001 Mar;35(1):37-48
pubmed: 11248388
Science. 2002 May 10;296(5570):1064-6
pubmed: 12004116
Cryobiology. 2003 Jun;46(3):205-29
pubmed: 12818211
Front Microbiol. 2017 Mar 28;8:494
pubmed: 28400755
Mol Ecol Resour. 2015 May;15(3):543-56
pubmed: 25327646
BMC Bioinformatics. 2018 Sep 29;19(1):343
pubmed: 30268091
Nat Microbiol. 2016 Dec 19;2:16242
pubmed: 27991881
Environ Microbiol. 2002 Nov;4(11):654-66
pubmed: 12460273
Environ Sci Technol. 2022 Jun 21;56(12):8629-8639
pubmed: 35658125
Genome Biol. 2017 Sep 21;18(1):182
pubmed: 28934964
Nucleic Acids Res. 2021 Jan 8;49(D1):D10-D17
pubmed: 33095870
Trends Ecol Evol. 2018 Oct;33(10):754-764
pubmed: 30146326
Sci Rep. 2016 May 31;6:26775
pubmed: 27240745
Front Microbiol. 2019 Feb 28;10:331
pubmed: 30873139
PLoS One. 2012;7(4):e34196
pubmed: 22539945
Nat Rev Microbiol. 2022 Oct;20(10):608-620
pubmed: 35922483
Microbiol Mol Biol Rev. 2011 Mar;75(1):14-49
pubmed: 21372319
Nat Methods. 2019 Jan;16(1):59-62
pubmed: 30559431
Front Microbiol. 2021 Mar 17;12:657986
pubmed: 33815348
ISME J. 2017 Jan;11(1):1-6
pubmed: 27636395
Sci Rep. 2021 Feb 4;11(1):3030
pubmed: 33542369
Environ Microbiol. 2006 Feb;8(2):308-20
pubmed: 16423017
Front Microbiol. 2016 Aug 08;7:1234
pubmed: 27551280
Front Microbiol. 2016 Jun 14;7:903
pubmed: 27379043
Trends Microbiol. 2021 Apr;29(4):289-298
pubmed: 33288384
Mar Life Sci Technol. 2020 Jul 6;3(2):121-131
pubmed: 37073338
Microorganisms. 2021 Jun 09;9(6):
pubmed: 34207615
Mol Ecol Resour. 2021 Jul;21(5):1490-1503
pubmed: 33580561
Gut Microbes. 2019;10(1):77-91
pubmed: 30118379
J R Soc Med. 2002 Feb;95(2):81-3
pubmed: 11823550
J Microbiol Methods. 2006 Aug;66(2):183-93
pubmed: 16632005
Sci Rep. 2017 Jul 31;7(1):6589
pubmed: 28761145
PLoS One. 2015 Oct 28;10(10):e0141503
pubmed: 26509674

Auteurs

Michael Lemke (M)

Department of Biology, University of Illinois at Springfield, Springfield, IL, USA. mlemk1@uis.edu.
Institute for Comparative Genomics, American Museum of Natural History, New York, NY, USA. mlemk1@uis.edu.

Rob DeSalle (R)

Institute for Comparative Genomics, American Museum of Natural History, New York, NY, USA.

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Classifications MeSH