Asymmetric catalysis by flavin-dependent halogenases.

atroposelective desymmetrization halocyclization halogenase kinetic resolution

Journal

Chirality
ISSN: 1520-636X
Titre abrégé: Chirality
Pays: United States
ID NLM: 8914261

Informations de publication

Date de publication:
08 2023
Historique:
revised: 15 02 2023
received: 22 12 2022
accepted: 16 02 2023
medline: 12 7 2023
pubmed: 15 3 2023
entrez: 14 3 2023
Statut: ppublish

Résumé

In nature, flavin-dependent halogenases (FDHs) catalyze site-selective chlorination and bromination of aromatic natural products. This ability has led to extensive efforts to engineer FDHs for selective chlorination, bromination, and iodination of electron rich aromatic compounds. On the other hand, FDHs are unique among halogenases and haloperoxidases that exhibit catalyst-controlled site selectivity in that no examples of enantioselective FDH catalysis in natural product biosynthesis have been characterized. Over the past several years, our group has established that FDHs can catalyze enantioselective reactions involving desymmetrization, atroposelective halogenation, and halocyclization. Achieving high activity and selectivity for these reactions has required extensive mutagenesis and mitigation of problems resulting from hypohalous acid generated during FDH catalysis. The single-component flavin reductase/FDH AetF is unique among the wild type enzyme we have studied in that it provides high activity and selectivity toward several asymmetric transformations. These results highlight the ability of FDH active sites to tolerate different substrate topologies and suggest that they could be useful for a broad range of oxidative halogenations.

Identifiants

pubmed: 36916449
doi: 10.1002/chir.23550
doi:

Substances chimiques

Flavins 0

Types de publication

Journal Article Review Research Support, N.I.H., Extramural

Langues

eng

Sous-ensembles de citation

IM

Pagination

452-460

Subventions

Organisme : NIGMS NIH HHS
ID : R01 GM115665
Pays : United States
Organisme : NIH HHS
ID : R01 GM115665
Pays : United States

Informations de copyright

© 2023 The Authors. Chirality published by Wiley Periodicals LLC.

Références

Naumann K. Influence of chlorine substituents on biological activity of chemicals: a review. Pest Man Sci. 2000;56(1):3-21. doi:10.1002/(SICI)1526002D4998(200001)56:1003C3::AID002DPS107003E3.0.CO;2002DP
Jeschke P. The unique role of halogen substituents in the design of modern agrochemicals. Pest Man Sci. 2010;66(1):10-27. doi:10.1002/ps.1829
Hernandes M, Cavalcanti S, Moreira D, de Azevedo Junior W, Leite AC. Halogen atoms in the modern medicinal chemistry: hints for the drug design. Curr Drug Targets. 2010;11(3):303-314. doi:10.2174/138945010790711996
de Meijere A, Bräse S, Oestreich M, Metal-catalyzed cross-coupling reactions and more, 2018.
Gribble GW. A recent survey of naturally occurring organohalogen compounds. Environ Chem. 2015;12(4):396-405. doi:10.1071/EN15002
Agarwal V, Miles ZD, Winter JM, Eustáquio AS, Gamal AAE, Moore BS. Enzymatic halogenation and dehalogenation reactions: pervasive and mechanistically diverse. Chem Rev. 2017;117(8):5619-5674. doi:10.1021/acs.chemrev.6b00571
Seibold C, Schnerr H, Rumpf J, et al. A flavin-dependent tryptophan 6-halogenase and its use in modification of pyrrolnitrin biosynthesis. Biocatal Biotransformation. 2006;24(6):401-408. doi:10.1080/10242420601033738
Frese M, Sewald N. Enzymatic halogenation of tryptophan on a gram scale. Angew Chem Int Ed English. 2014;54(1):298-301. doi:10.1002/anie.201408561
Payne JT, Andorfer MC, Lewis JC. Regioselective arene halogenation using the FAD-dependent halogenase RebH. Angew Chem Int Ed. 2013;52(20):5271-5274. doi:10.1002/anie.201300762
Smith DRM, Uria AR, Helfrich EJN, et al. An unusual flavin-dependent halogenase from the metagenome of the marine sponge Theonella swinhoei WA. ACS Chem Biol. 2017;12(5):1281-1287. doi:10.1021/acschembio.6b01115
Carter-Franklin J, Butler A. Vanadium bromoperoxidase-catalyzed biosynthesis of halogenated marine natural products. J Am Chem Soc. 2004;126(46):15060-15066. doi:10.1021/ja047925p
Chen PY-T, Adak S, Chekan JR, et al. Structural basis of stereospecific vanadium-dependent haloperoxidase family enzymes in napyradiomycin biosynthesis. Biochem. 2022;61(17):1844-1852. doi:10.1021/acs.biochem.2c00338
Papadopoulou A, Meyer F, Buller RM. Engineering Fe(II)/α-ketoglutarate-dependent halogenases and desaturases. Biochem. 2023;62(2):229-240. doi:10.1021/acs.biochem.2c00115
Gomez CA, Mondal D, Du Q, Chan N, Lewis JC. Directed evolution of a Fe(II)- and α-ketoglutarate-dependent dioxygenase for site-selective azidation of unactivated aliphatic C-H bonds. Angew Chem Int Ed 2023;e202301370. doi:10.1002/anie/202301370
Phintha A, Prakinee K, Chaiyen P. Structures, mechanisms and applications of flavin-dependent halogenases. Enzym. 2020;47:327-364. doi:10.1016/bs.enz.2020.05.009
Gkotsi DS, Dhaliwal J, McLachlan MM, Mulholand KR, Goss RJ. Halogenases: powerful tools for biocatalysis (mechanisms applications and scope). Curr Opin Chem Biol. 2018;43:119-126. doi:10.1016/j.cbpa.2018.01.002
Latham J, Brandenburger E, Shepherd SA, Menon BRK, Micklefield J. Development of halogenase enzymes for use in synthesis. Chem Rev. 2017;118:232-269.
Weichold V, Milbredt D, van Pée K-H. Specific enzymatic halogenation-from the discovery of halogenated enzymes to their applications in vitro and in vivo. Angew Chem Int Ed. 2016;55(22):6374-6389. doi:10.1002/anie.201509573
Poor CB, Andorfer MC, Lewis JC. Improving the stability and catalyst lifetime of the halogenase RebH by directed evolution. Chembiochem. 2014;15(9):1286-1289. doi:10.1002/cbic.201300780
Payne JT, Poor CB, Lewis JC. Directed evolution of RebH for site-selective halogenation of large biologically active molecules. Angew Chem Int Ed. 2015;54(14):4226-4230. doi:10.1002/anie.201411901
Glenn WS, Nims E, O'Connor SE. Reengineering a tryptophan halogenase to preferentially chlorinate a direct alkaloid precursor. J Am Chem Soc. 2011;133(48):19346-19349. doi:10.1021/ja2089348
Andorfer MC, Park H-J, Vergara-Coll J, Lewis JC. Directed evolution of RebH for catalyst-controlled halogenation of indole C-H bonds. Chem Sci. 2016;7(6):3720-3729. doi:10.1039/C5SC04680G
Shepherd SA, Menon BRK, Fisk H, et al. A structure-guided switch in the regioselectivity of a tryptophan halogenase. Chembiochem. 2016;17(9):821-824. doi:10.1002/cbic.201600051
Moritzer A-C, Minges H, Prior T, Frese M, Sewald N, Niemann HH. Structure-based switch of regioselectivity in the flavin-dependent tryptophan 6-halogenase Thal. J Biol Chem. 2019;294(7):2529-2542. doi:10.1074/jbc.RA118.005393
Fisher BF, Snodgrass HM, Jones KA, Andorfer MC, Lewis JC. Site-selective C-H halogenation using flavin-dependent halogenases identified via family-wide activity profiling. ACS Cent Sci. 2019;5(11):1844-1856. doi:10.1021/acscentsci.9b00835
Gkotsi DS, Ludewig H, Sharma SV, et al. A marine viral halogenase that iodinates diverse substrates. Nat Chem. 2019;11(12):1091-1097. doi:10.1038/s41557-019-0349-z
Dong C, Flecks S, Unversucht S, Haupt C, van Pée K-H, Naismith JH. Tryptophan 7-halogenase (PrnA) structure suggests a mechanism for regioselective chlorination. Science. 2005;309(5744):2216-2219. doi:10.1126/science.1116510
Flecks S, Patallo EP, Zhu X, et al. New insights into the mechanism of enzymatic chlorination of tryptophan. Angew Chem Int Ed. 2008;47(49):9533-9536. doi:10.1002/anie.200802466
Ainsley J, Mulholland AJ, Black GW, Sparagano O, Christov CZ, Karabencheva-Christova TG. Structural insights from molecular dynamics simulations of tryptophan 7-halogenase and tryptophan 5-halogenase. ACS Omega. 2018;3(5):4847-4859. doi:10.1021/acsomega.8b00385
Andorfer MC, Evans D, Yang S, et al. Analysis of laboratory-evolved flavin-dependent halogenases affords a computational model for predicting halogenase site selectivity. Chem Catal. 2022;2(10):2658-2674. doi:10.1016/j.checat.2022.07.003
Phintha A, Prakinee K, Jaruwat A, et al. Dissecting the low catalytic capability of flavin-dependent halogenases. J Biol Chem. 2021;296:100068. doi:10.1074/jbc.RA120.016004
Yeh E, Blasiak LC, Koglin A, Drennan CL, Walsh CT. Chlorination by a long-lived intermediate in the mechanism of flavin-dependent halogenases. Biochemistry. 2007;46(5):1284-1292. doi:10.1021/bi0621213
Yeh E, Cole L, Barr E, Bollinger J, Ballou D, Walsh C. Flavin redox chemistry precedes substrate chlorination during the reaction of the flavin-dependent halogenase RebH. Biochemistry. 2006;45(25):7904-7912. doi:10.1021/bi060607d
Prakinee K, Phintha A, Visitsatthawong S, et al. Mechanism-guided tunnel engineering to increase the efficiency of a flavin-dependent halogenase. Nat Catal. 2022;5(6):534-544. doi:10.1038/s41929-022-00800-8
Podgoršek A, Zupan M, Iskra J. Oxidative halogenation with “green” oxidants: oxygen and hydrogen peroxide. Angew Chem Int Ed. 2009;48(45):8424-8450. doi:10.1002/anie.200901223
Andorfer MC, Grob JE, Hajdin CE, et al. Understanding flavin-dependent halogenase reactivity via substrate activity profiling. ACS Catal. 2017;7(3):1897-1904. doi:10.1021/acscatal.6b02707
Lewis CA, Gustafson JL, Chiu A, et al. A case of remote asymmetric induction in the peptide-catalyzed desymmetrization of a bis(phenol). J Am Chem Soc. 2008;130(48):16358-16365. doi:10.1021/ja807120z
Payne JT, Butkovich PH, Gu Y, et al. Enantioselective desymmetrization of methylenedianilines via enzyme-catalyzed remote halogenation. J Am Chem Soc. 2018;140(2):546-549. doi:10.1021/jacs.7b09573
Carmona JA, Rodríguez-Franco C, Fernández R, Hornillos V, Lassaletta JM. Atroposelective transformation of axially chiral (hetero)biaryls. From desymmetrization to modern resolution strategies. Chem Soc Rev. 2021;50(5):2968-2983. doi:10.1039/D0CS00870B
Metrano AJ, Miller SJ. Peptide-based catalysts reach the outer sphere through remote desymmetrization and atroposelectivity. Acc Chem Res. 2018;52:199-215.
Diener ME, Metrano AJ, Kusano S, Miller SJ. Enantioselective synthesis of 3-arylquinazolin-4(3H)-ones via peptide-catalyzed atroposelective bromination. J Am Chem Soc. 2015;137(38):12369-12377. doi:10.1021/jacs.5b07726
Snodgrass HM, Mondal D, Lewis JC. Directed evolution of flavin-dependent halogenases for site- and atroposelective halogenation of 3-aryl-4(3H)-quinazolinones via kinetic or dynamic kinetic resolution. J Am Chem Soc. 2022;144(36):16676-16682. doi:10.1021/jacs.2c07422
Denmark SE, Kuester WE, Burk MT. Catalytic, asymmetric halofunctionalization of alkenes-a critical perspective. Angew Chem Int Ed. 2012;51(44):10938-10953. doi:10.1002/anie.201204347
Ashtekar KD, Vetticatt M, Yousefi R, Jackson JE, Borhan B. Nucleophile-assisted alkene activation: olefins alone are often incompetent. J Am Chem Soc. 2016;138(26):8114-8119. doi:10.1021/jacs.6b02877
Mondal D, Fisher BF, Jiang Y, Lewis JC. Flavin-dependent halogenases catalyze enantioselective olefin halocyclization. Nat Commun. 2021;12(1):3268. doi:10.1038/s41467-021-23503-3
Böse D, Denmark S. Investigating the enantiodetermining step of a chiral Lewis base catalyzed bromocycloetherification of privileged alkenes. Synlett. 2018;29(4):433-439. doi:10.1055/s-0036-1590951
Ke Z, Tan CK, Liu Y, Lee KGZ, Yeung Y-Y. Catalytic and enantioselective bromoetherification of olefinic 1,3-diols: mechanistic insight. Tetrahedron. 2016;72(21):2683-2689. doi:10.1016/j.tet.2015.09.016
Ke Z, Tan CK, Chen F, Yeung Y-Y. Catalytic asymmetric bromoetherification and desymmetrization of olefinic 1,3-diols with C2-symmetric sulfides. J Am Chem Soc. 2014;136(15):5627-5630. doi:10.1021/ja5029155
Zhou P, Cai Y, Zhong X, et al. Catalytic asymmetric intra and intermolecular haloetherification of enones: an efficient approach to (−)-centrolobine. ACS Catal. 2016;6(11):7778-7783. doi:10.1021/acscatal.6b02048
Jiang Y, Mondal D, Lewis JC. Expanding the reactivity of flavin-dependent halogenases toward olefins via enantioselective intramolecular haloetherification and chemoenzymatic oxidative rearrangements. ACS Catal. 2022;12(21):13501-13505. doi:10.1021/acscatal.2c03383
Yeh E, Garneau S, Walsh CT. Robustin vitroactivity of RebF and RebH, a two-component reductase/halogenase, generating 7-chlorotryptophan during rebeccamycin biosynthesis. Proc Nat Acad Sci. 2005;102(11):3960-3965. doi:10.1073/pnas.0500755102
Agarwal V, Gamal AAE, Yamanaka K, et al. Biosynthesis of polybrominated aromatic organic compounds by marine bacteria. Nat Chem Biol. 2014;10(8):640-647. doi:10.1038/nchembio.1564
Adak S, Lukowski AL, Schäfer RJB, Moore BS. From tryptophan to toxin: nature's convergent biosynthetic strategy to aetokthonotoxin. J Am Chem Soc. 2022;144(7):2861-2866. doi:10.1021/jacs.1c12778
Jiang Y, Snodgrass HM, Zubi YS, et al. The single-component flavin reductase/flavin-dependent halogenase AetF is a versatile catalyst for selective bromination and iodination of arenes and olefins. Angew Chem Int Ed. 2022;61(51):e202214610. doi:10.1002/anie.202214610

Auteurs

Yuhua Jiang (Y)

Department of Chemistry, Indiana University, Bloomington, Indiana, USA.

Jared C Lewis (JC)

Department of Chemistry, Indiana University, Bloomington, Indiana, USA.

Articles similaires

Risk Assessment Plant Leaves Isomerism Humans Stereoisomerism
Osteosarcoma Animals Glutathione Oxidation-Reduction Mice
Peroxynitrous Acid Animals Escherichia coli Immunotherapy Mice
Colorimetry Captopril Humans Alloys Limit of Detection

Classifications MeSH