Draft Genome Sequence of the Rhinocladiella similis Clinical Isolate CBS 149759.
Melanized fungi
Rhinocladiella similis
Whole genome
Journal
Mycopathologia
ISSN: 1573-0832
Titre abrégé: Mycopathologia
Pays: Netherlands
ID NLM: 7505689
Informations de publication
Date de publication:
Jun 2023
Jun 2023
Historique:
received:
07
12
2022
accepted:
08
02
2023
medline:
30
6
2023
pubmed:
7
4
2023
entrez:
6
4
2023
Statut:
ppublish
Résumé
Rhinocladiella similis is a melanized fungi involved in chromoblastomycosis. R. similis genome has never been sequenced, therefore we propose the first draft genome of R. similis.
Identifiants
pubmed: 37022620
doi: 10.1007/s11046-023-00715-3
pii: 10.1007/s11046-023-00715-3
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
255-257Informations de copyright
© 2023. The Author(s), under exclusive licence to Springer Nature B.V.
Références
Heidrich D, González GM, Pagani DM, Ramírez-Castrillón M, Scroferneker ML. Chromoblastomycosis caused by Rhinocladiella similis: Case report. Med Mycol Case Rep. 2017;16:25–7.
doi: 10.1016/j.mmcr.2017.04.002
pubmed: 28458993
pmcid: 5397130
Queiroz-Telles F, de Hoog S, Santos DWCL, Salgado CG, Vicente VA, Bonifaz A, et al. Chromoblastomycosis. Clin Microbiol Rev. 2017;30:233–76.
doi: 10.1128/CMR.00032-16
pubmed: 27856522
de Hoog GS, Vicente V, Caligiorne RB, Kantarcioglu S, Tintelnot K, Gerrits van den Ende AHG, et al. Species diversity and polymorphism in the Exophiala spinifera clade containing opportunistic black yeast-like fungi. J Clin Microbiol. 2003;41:4767–78.
de Andrade TS, de Almeida AMZ, Basano S de A, Takagi EH, Szeszs MW, Melhem MSC, et al. Chromoblastomycosis in the Amazon region, Brazil, caused by Fonsecaea pedrosoi, Fonsecaea nubica, and Rhinocladiella similis: clinicopathology, susceptibility, and molecular identification. Med Mycol. 2020;58:172–80.
Richarz NA, Jaka A, Fernández-Rivas G, Bassas J, Bielsa I, Ferrándiz C. First case of chronic cutaneous chromoblastomycosis by Rhinocladiella similis aquired in Europe. Clin Exp Dermatol. 2018;43:925–7.
doi: 10.1111/ced.13659
pubmed: 29885020
Figel IC, Marangoni PRD, Tralamazza SM, Vicente VA, do Dalzoto P R, do Nascimento MMF, et al. Black yeasts-like fungi isolated from dialysis water in hemodialysis units. Mycopathologia. 2013;175:413–20.
Abdolrasouli A, Gibani MM, de Groot T, Borman AM, Hoffman P, Azadian BS, et al. A pseudo-outbreak of Rhinocladiella similis in a bronchoscopy unit of a tertiary care teaching hospital in London. United Kingdom Mycoses. 2021;64:394–404.
pubmed: 33314345
Zeng JS, De Hoog GS. Exophiala spinifera and its allies: diagnostics from morphology to DNA barcoding. Med Mycol. 2008;46:193–208.
doi: 10.1080/13693780701799217
pubmed: 18404547
Wick RR. Filtlong [Internet]. GitHub. 2017 [cited 2022 Feb 7]. Available from: https://github.com/rrwick/Filtlong/
Kolmogorov M, Yuan J, Lin Y, Pevzner PA. Assembly of long, error-prone reads using repeat graphs. Nat Biotechnol. 2019;37:540–6.
doi: 10.1038/s41587-019-0072-8
pubmed: 30936562
Palmer J, Stajich J. Funannotate [Internet]. 2019 [cited 2022 Feb 7]. Available from: https://github.com/nextgenusfs/funannotate
Keller O, Kollmar M, Stanke M, Waack S. A novel hybrid gene prediction method employing protein multiple sequence alignments. Bioinformatics. 2011;27:757–63.
doi: 10.1093/bioinformatics/btr010
pubmed: 21216780
Korf I. Gene finding in novel genomes. BMC Bioinformatics. 2004;5:59.
doi: 10.1186/1471-2105-5-59
pubmed: 15144565
pmcid: 421630
Delcher AL, Bratke KA, Powers EC, Salzberg SL. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics. 2007;23:673–9.
doi: 10.1093/bioinformatics/btm009
pubmed: 17237039
Jones P, Binns D, Chang H-Y, Fraser M, Li W, McAnulla C, et al. InterProScan 5: genome-scale protein function classification. Bioinformatics. 2014;30:1236–40.
doi: 10.1093/bioinformatics/btu031
pubmed: 24451626
pmcid: 3998142
Blin K, Shaw S, Kloosterman AM, Charlop-Powers Z, van Wezel GP, Medema MH, et al. antiSMASH 6.0: improving cluster detection and comparison capabilities. Nucleic Acids Res. 2021;49:29–35.
Manni M, Berkeley MR, Seppey M, Simão FA, Zdobnov EM. BUSCO update: novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic, and viral genomes. Mol Biol Evol. 2021;38:4647–54.
doi: 10.1093/molbev/msab199
pubmed: 34320186
pmcid: 8476166
Mac Aogáin M, Chaturvedi V, Chotirmall SH. MycopathologiaGENOMES: the new “home” for the publication of fungal genomes. Mycopathologia. 2019;184:551–4.
doi: 10.1007/s11046-019-00366-3
pubmed: 31399887