Lysogenic bacteriophages encoding arsenic resistance determinants promote bacterial community adaptation to arsenic toxicity.
Journal
The ISME journal
ISSN: 1751-7370
Titre abrégé: ISME J
Pays: England
ID NLM: 101301086
Informations de publication
Date de publication:
07 2023
07 2023
Historique:
received:
22
06
2022
accepted:
27
04
2023
revised:
21
04
2023
medline:
23
6
2023
pubmed:
10
5
2023
entrez:
10
5
2023
Statut:
ppublish
Résumé
Emerging evidence from genomics gives us a glimpse into the potential contribution of lysogenic bacteriophages (phages) to the environmental adaptability of their hosts. However, it is challenging to quantify this kind of contribution due to the lack of appropriate genetic markers and the associated controllable environmental factors. Here, based on the unique transformable nature of arsenic (the controllable environmental factor), a series of flooding microcosms was established to investigate the contribution of arsM-bearing lysogenic phages to their hosts' adaptation to trivalent arsenic [As(III)] toxicity, where arsM is the marker gene associated with microbial As(III) detoxification. In the 15-day flooding period, the concentration of As(III) was significantly increased, and this elevated As(III) toxicity visibly inhibited the bacterial population, but the latter quickly adapted to As(III) toxicity. During the flooding period, some lysogenic phages re-infected new hosts after an early burst, while others persistently followed the productive cycle (i.e., lytic cycle). The unique phage-host interplay contributed to the rapid spread of arsM among soil microbiota, enabling the quick recovery of the bacterial community. Moreover, the higher abundance of arsM imparted a greater arsenic methylation capability to soil microbiota. Collectively, this study provides experimental evidence for lysogenic phages assisting their hosts in adapting to an extreme environment, which highlights the ecological perspectives on lysogenic phage-host mutualism.
Identifiants
pubmed: 37161002
doi: 10.1038/s41396-023-01425-w
pii: 10.1038/s41396-023-01425-w
pmc: PMC10284793
doi:
Substances chimiques
Arsenic
N712M78A8G
Soil
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
1104-1115Commentaires et corrections
Type : ErratumIn
Informations de copyright
© 2023. The Author(s).
Références
Biometals. 2009 Feb;22(1):117-30
pubmed: 19130261
Nat Microbiol. 2022 Jan;7(1):145-153
pubmed: 34887546
FEMS Microbiol Rev. 2004 May;28(2):127-81
pubmed: 15109783
Proc Natl Acad Sci U S A. 2001 Feb 13;98(4):1643-8
pubmed: 11172004
Environ Sci Technol. 2012 Feb 21;46(4):2163-8
pubmed: 22295880
Nat Microbiol. 2018 Aug;3(8):870-880
pubmed: 30013236
Proc Natl Acad Sci U S A. 2018 May 8;115(19):4987-4991
pubmed: 29686091
mSystems. 2022 Feb 22;7(1):e0135821
pubmed: 35089086
ISME J. 2022 May;16(5):1397-1408
pubmed: 35039616
Microbiome. 2021 Jun 28;9(1):150
pubmed: 34183048
Sci Total Environ. 2021 Aug 1;780:146628
pubmed: 34030306
BMC Biol. 2019 May 30;17(1):45
pubmed: 31146755
Bioinformatics. 2021 Jul 27;37(13):1805-1813
pubmed: 33471063
ISME J. 2016 Apr;10(4):858-70
pubmed: 26394009
Nat Commun. 2016 Apr 13;7:11257
pubmed: 27071849
Angew Chem Int Ed Engl. 2023 Mar 27;62(14):e202217412
pubmed: 36732297
Nat Methods. 2016 Jul;13(7):581-3
pubmed: 27214047
Appl Environ Microbiol. 2013 Jul;79(14):4493-5
pubmed: 23645194
mBio. 2023 Apr 25;14(2):e0300922
pubmed: 36786571
Environ Microbiol Rep. 2012 Dec;4(6):571-86
pubmed: 23760928
Environ Microbiol. 2022 Apr;24(4):2098-2118
pubmed: 35293111
Front Microbiol. 2021 May 28;12:655903
pubmed: 34122370
Sci Total Environ. 2017 Jan 1;574:1684-1694
pubmed: 27616712
Microbiol Mol Biol Rev. 2000 Mar;64(1):69-114
pubmed: 10704475
Nat Rev Microbiol. 2011 Feb;9(2):99-108
pubmed: 21200397
Microbiome. 2017 Jul 19;5(1):83
pubmed: 28724405
Environ Sci Technol. 2020 Apr 7;54(7):3940-3950
pubmed: 32182045
Acc Chem Res. 2019 Apr 16;52(4):849-857
pubmed: 30925037
PLoS Genet. 2014 Oct 09;10(10):e1004636
pubmed: 25299644
Environ Sci Technol. 2019 Dec 17;53(24):14409-14419
pubmed: 31765134
Environ Sci Technol. 2013 Apr 2;47(7):3141-8
pubmed: 23469919
Nature. 2015 Apr 9;520(7546):171-9
pubmed: 25855454
Rev Environ Contam Toxicol. 1992;124:79-110
pubmed: 1732996
ISME J. 2008 Jun;2(6):579-89
pubmed: 18521076
Environ Sci Technol. 2009 Nov 1;43(21):8270-5
pubmed: 19924955
mSystems. 2020 Jun 16;5(3):
pubmed: 32546670
Proc Natl Acad Sci U S A. 2022 Oct 4;119(40):e2201473119
pubmed: 36161886
Crit Rev Microbiol. 2005;31(2):69-78
pubmed: 15986832
Nat Protoc. 2007;2(2):269-76
pubmed: 17406585
Environ Sci Technol. 2013 Jul 2;47(13):7147-54
pubmed: 23750559
mBio. 2017 Jul 11;8(4):
pubmed: 28698277
Methods. 2016 Jun 1;102:3-11
pubmed: 27012178
Appl Environ Microbiol. 2005 Feb;71(2):721-7
pubmed: 15691922
Environ Sci Technol. 2018 Jan 2;52(1):61-70
pubmed: 29188998
Science. 1996 Jun 28;272(5270):1910-4
pubmed: 8658163
Environ Sci Technol. 2012 Feb 21;46(4):2251-6
pubmed: 22296291
Environ Int. 2019 May;126:585-597
pubmed: 30852446
Biometals. 2021 Aug;34(4):895-907
pubmed: 33956287
Microbiol Mol Biol Rev. 2002 Jun;66(2):250-71
pubmed: 12040126
Proc Natl Acad Sci U S A. 2020 May 12;117(19):10414-10421
pubmed: 32350143
Environ Res. 2010 Jul;110(5):435-42
pubmed: 19758587
Microbiome. 2022 Oct 24;10(1):181
pubmed: 36280853
Trends Microbiol. 2015 Apr;23(4):185-91
pubmed: 25708933
Trends Microbiol. 2001 Mar;9(3):137-44
pubmed: 11303502
J Hazard Mater. 2023 Feb 5;443(Pt A):130184
pubmed: 36270189
Science. 2011 Apr 1;332(6025):106-9
pubmed: 21454789
Proc Natl Acad Sci U S A. 2009 May 26;106(21):8605-10
pubmed: 19435847
Viruses. 2018 Oct 27;10(11):
pubmed: 30373217
J Evol Biol. 2014 Oct;27(10):2219-32
pubmed: 25244050
Bioinformatics. 2021 Oct 11;37(19):3364-3366
pubmed: 33792634
Microbiome. 2020 Jun 9;8(1):89
pubmed: 32517753
ISME J. 2021 May;15(5):1344-1358
pubmed: 33343000
Nat Microbiol. 2018 Jul;3(7):754-766
pubmed: 29867096
Elife. 2018 Dec 18;7:
pubmed: 30560784
Water Res. 2022 Nov 1;226:119183
pubmed: 36244146
Science. 2020 May 22;368(6493):845-850
pubmed: 32439786
Environ Int. 2009 May;35(4):743-59
pubmed: 19232730
Nature. 2017 Jan 26;541(7638):488-493
pubmed: 28099413
ACS Environ Au. 2021 Nov 30;2(2):156-165
pubmed: 37101581
Nat Rev Microbiol. 2014 Mar;12(3):181-96
pubmed: 24509783
Nature. 2003 Aug 14;424(6950):741
pubmed: 12917674
ISME J. 2016 Feb;10(2):437-49
pubmed: 26296067
Appl Environ Microbiol. 2015 Oct;81(19):6718-24
pubmed: 26187966
Bioinformatics. 2014 Jul 15;30(14):2068-9
pubmed: 24642063
Cell. 2017 Jan 12;168(1-2):186-199.e12
pubmed: 28041851
Appl Environ Microbiol. 2013 Aug;79(15):4635-42
pubmed: 23709511