RNA Sequencing Identifies Novel NRG1 Fusions in Solid Tumors that Lack Co-Occurring Oncogenic Drivers.


Journal

The Journal of molecular diagnostics : JMD
ISSN: 1943-7811
Titre abrégé: J Mol Diagn
Pays: United States
ID NLM: 100893612

Informations de publication

Date de publication:
Jul 2023
Historique:
received: 17 10 2022
revised: 02 03 2023
accepted: 30 03 2023
medline: 26 6 2023
pubmed: 11 5 2023
entrez: 10 5 2023
Statut: ppublish

Résumé

NRG1 gene fusions are rare, therapeutically relevant, oncogenic drivers that occur across solid tumor types. To understand the landscape of NRG1 gene fusions, 4397 solid tumor formalin-fixed, paraffin-embedded samples consecutively tested by comprehensive genomic and immune profiling during standard care were analyzed. Nineteen NRG1 fusions were found in 17 unique patients, across multiple tumor types, including non-small-cell lung (n = 7), breast (n = 2), colorectal (n = 3), esophageal (n = 2), ovarian (n = 1), pancreatic (n = 1), and unknown primary (n = 1) carcinomas, with a cumulative incidence of 0.38%. Fusions were identified with breakpoints across four NRG1 introns spanning 1.4 megabases, with a mixture of known (n = 8) and previously unreported (n = 11) fusion partners. Co-occurring driver alterations in tumors with NRG1 fusions were uncommon, except colorectal carcinoma, where concurrent alterations in APC, BRAF, and ERBB2 were present in a subset of cases. The overall lack of co-occurring drivers highlights the importance of identifying NRG1 gene fusions, as these patients are unlikely to harbor other targetable alterations. In addition, RNA sequencing is important to identify NRG1 gene fusions given the variety of fusion partners and large genomic areas where breakpoints can occur.

Identifiants

pubmed: 37164276
pii: S1525-1578(23)00099-5
doi: 10.1016/j.jmoldx.2023.03.011
pii:
doi:

Substances chimiques

Oncogene Proteins, Fusion 0
NRG1 protein, human 0
Neuregulin-1 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

454-466

Informations de copyright

Copyright © 2023 Association for Molecular Pathology and American Society for Investigative Pathology. Published by Elsevier Inc. All rights reserved.

Auteurs

Eric Severson (E)

Enterprise Oncology, Labcorp, Durham, North Carolina. Electronic address: eric.severson@labcorp.com.

Bhagelu R Achyut (BR)

Enterprise Oncology, Labcorp, Durham, North Carolina.

Mary Nesline (M)

OmniSeq, Buffalo, New York.

Sarabjot Pabla (S)

OmniSeq, Buffalo, New York.

Rebecca A Previs (RA)

Enterprise Oncology, Labcorp, Durham, North Carolina; Division of Gynecologic Oncology, Department of Obstetrics and Gynecology, Duke Cancer Institute, Duke University Medical Center, Durham, North Carolina.

Geoffrey Kannan (G)

Enterprise Oncology, Labcorp, Durham, North Carolina.

Anjen Chenn (A)

Enterprise Oncology, Labcorp, Durham, North Carolina.

Shengle Zhang (S)

OmniSeq, Buffalo, New York.

Roger Klein (R)

OmniSeq, Buffalo, New York.

Jeffrey Conroy (J)

OmniSeq, Buffalo, New York.

Mark Sausen (M)

Personal Genome Diagnostics, Baltimore, Maryland.

Pratheesh Sathyan (P)

Illumina, San Diego, California.

Kamal S Saini (KS)

Enterprise Oncology, Labcorp, Durham, North Carolina.

Aradhana Ghosh (A)

Enterprise Oncology, Labcorp, Durham, North Carolina.

Taylor J Jensen (TJ)

Enterprise Oncology, Labcorp, Durham, North Carolina.

Prasanth Reddy (P)

Enterprise Oncology, Labcorp, Durham, North Carolina.

Shakti H Ramkissoon (SH)

Enterprise Oncology, Labcorp, Durham, North Carolina; Wake Forest Comprehensive Cancer Center and Department of Pathology, Wake Forest School of Medicine, Winston-Salem, North Carolina.

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Classifications MeSH