Search for Dispersed Repeats in Bacterial Genomes Using an Iterative Procedure.
bacteria
dispersed repeats
dynamic programming
genome
iteration
Journal
International journal of molecular sciences
ISSN: 1422-0067
Titre abrégé: Int J Mol Sci
Pays: Switzerland
ID NLM: 101092791
Informations de publication
Date de publication:
30 Jun 2023
30 Jun 2023
Historique:
received:
11
06
2023
revised:
27
06
2023
accepted:
28
06
2023
medline:
17
7
2023
pubmed:
14
7
2023
entrez:
14
7
2023
Statut:
epublish
Résumé
We have developed a de novo method for the identification of dispersed repeats based on the use of random position-weight matrices (PWMs) and an iterative procedure (IP). The created algorithm (IP method) allows detection of dispersed repeats for which the average number of substitutions between any two repeats per nucleotide (
Identifiants
pubmed: 37446142
pii: ijms241310964
doi: 10.3390/ijms241310964
pmc: PMC10341722
pii:
doi:
Substances chimiques
DNA
9007-49-2
DNA, Bacterial
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Déclaration de conflit d'intérêts
The authors declare no conflict of interest.
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