Engineering a Formate Dehydrogenase for NADPH Regeneration.
cofactor preference
cofactor regeneration
formate dehydrogenase
protein engineering
Journal
Chembiochem : a European journal of chemical biology
ISSN: 1439-7633
Titre abrégé: Chembiochem
Pays: Germany
ID NLM: 100937360
Informations de publication
Date de publication:
17 10 2023
17 10 2023
Historique:
revised:
09
07
2023
received:
24
05
2023
medline:
23
10
2023
pubmed:
17
7
2023
entrez:
16
7
2023
Statut:
ppublish
Résumé
Nicotinamide adenine dinucleotide (NADH) and nicotinamide adenine dinucleotide phosphate (NADPH) constitute major hydrogen donors for oxidative/reductive bio-transformations. NAD(P)H regeneration systems coupled with formate dehydrogenases (FDHs) represent a dreamful method. However, most of the native FDHs are NAD
Identifiants
pubmed: 37455264
doi: 10.1002/cbic.202300390
doi:
Substances chimiques
NADP
53-59-8
NAD
0U46U6E8UK
Formate Dehydrogenases
EC 1.17.1.9
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
e202300390Informations de copyright
© 2023 Wiley-VCH GmbH.
Références
U. T. Bornscheuer, G. Huisman, R. Kazlauskas, S. Lutz, J. Moore, K. Robins, Nature 2012, 485, 185-194;
D. J. Pollard, J. M. Woodley, Trends Biotechnol. 2007, 25, 66-73;
F. Hollmann, I. W. Arends, D. Holtmann, Green Chem. 2011, 13, 2285-2314.
H. Wu, C. Tian, X. Song, C. Liu, D. Yang, Z. Jiang, Green Chem. 2013, 15, 1773-1789.
P. Macheroux, B. Kappes, S. E. Ealick, FEBS J. 2011, 278, 2625-2634.
K. Takeda, K. Umezawa, A. Várnai, V. G. Eijsink, K. Igarashi, M. Yoshida, N. Nakamura, Curr. Opin. Chem. Biol. 2019, 49, 113-121.
R. Banerjee, J. Purhonen, J. Kallijärvi, FEBS J. 2022, 289, 6936-6958.
S. Mordhorst, J. N. Andexer, Nat. Prod. Rep. 2020, 37, 1316-1333.
Y. Maenaka, T. Suenobu, S. Fukuzumi, J. Am. Chem. Soc. 2012, 134, 9417-9427.
Y. S. Lee, R. Gerulskis, S. D. Minteer, Curr. Opin. Biotechnol. 2022, 73, 14-21;
Y. H. Kim, Y. J. Yoo, Enzyme Microb. Technol. 2009, 44, 129-134.
I. Willner, D. Mandler, Enzyme Microb. Technol. 1989, 11, 467-483;
S. H. Lee, Y. C. Kwon, D. M. Kim, C. B. Park, Biotechnol. Bioeng. 2013, 110, 383-390.
W. Liu, P. Wang, Biotechnol. Adv. 2007, 25, 369-384.
K. Bachosz, J. Zdarta, M. Bilal, A. S. Meyer, T. Jesionowski, Sci. Total Environ. 2023, 161630.
W. Z. Qian, L. Ou, C. X. Li, J. Pan, J. H. Xu, Q. Chen, G. W. Zheng, ChemBioChem 2020, 21, 2680-2688.
Q. Jia, Y.-C. Zheng, H.-P. Li, X.-L. Qian, Z.-J. Zhang, J.-H. Xu, Appl. Environ. Microbiol. 2022, 88, e00341-00322.
X. Wang, T. Saba, H. H. Yiu, R. F. Howe, J. A. Anderson, J. Shi, Chem. 2017, 2, 621-654.
Z. Yang, H. Fu, W. Ye, Y. Xie, Q. Liu, H. Wang, D. Wei, Catal. Sci. Technol. 2020, 10, 70-78.
A. Zhang, X. Zhuang, J. Liu, J. Huang, L. Lin, Y. Tang, S. Zhao, R. Li, B. Wang, B. Fang, Nat. Catal. 2023, 1-10.
A. V. Mesentsev, V. S. Lamzin, V. I. Tishkov, T. B. Ustinnikova, V. O. Popov, Biochem. J. 1997, 321, 475-480.
V. I. Tishkov, V. O. Popov, Biomol. Eng. 2006, 23, 89-110.
M. Moon, G. W. Park, J.-p. Lee, J.-S. Lee, K. Min, J. CO2 Util. 2020, 42, 101353.
R. R. Mendel, S. Leimkühler, JBIC J. Biol. Inorg. Chem. 2015, 20, 337-347;
J.-i. Yang, S. H. Lee, J.-Y. Ryu, H. S. Lee, S. G. Kang, Front. Microbiol. 2022, 13.
C. Wandrey, A. Liese, D. Kihumbu, Org. Process Res. Dev. 2000, 4, 286-290;
N. Xu, J. Zhu, Y. Wu, Y. Zhang, J. H. Xu, Org. Process Res. Dev. 2020;
J. Zhu, Q. Geng, Y.-Y. Liu, J. Pan, H. L. Yu, J.-H. Xu, Org. Process Res. Dev. 2022, 26, 1978-1983;
Y. Peng, Z. Chen, J. Xu, Q. Wu, Org. Process Res. Dev. 2022, 26, 1900-1913.
L. S. Vidal, C. L. Kelly, P. M. Mordaka, J. T. Heap, Biochim. Biophys. Acta. 2018, 1866, 327-347.
V. Tishkov, V. Popov, Biochemistry 2004, 69, 1252-1267.
J. K. Cahn, C. A. Werlang, A. Baumschlager, S. Brinkmann-Chen, S. L. Mayo, F. H. Arnold, ACS Synth. Biol. 2017, 6, 326-333.
C. Mähler, F. Kratzl, M. Vogel, S. Vinnenberg, D. Weuster-Botz, K. Castiglione, Adv. Synth. Catal. 2019, 361, 2505-2513.
K. Balke, M. Kadow, H. Mallin, S. Saß, U. T. Bornscheuer, Org. Biomol. Chem. 2012, 10, 6249-6265;
O. Döhr, M. J. Paine, T. Friedberg, G. C. Roberts, C. R. Wolf, Proc. Nat. Acad. Sci. 2001, 98, 81-86.
N. Borlinghaus, B. M. Nestl, ChemCatChem 2018, 10, 183-187.
M. Lenz, N. Borlinghaus, L. Weinmann, B. M. Nestl, World J. Microbiol. Biotechnol. 2017, 33, 1-10.
A. Beier, S. Bordewick, M. Genz, S. Schmidt, T. Van Den Bergh, C. Peters, H. J. Joosten, U. T. Bornscheuer, ChemBioChem 2016, 17, 2312-2315;
M. Gand, C. Thöle, H. Müller, H. Brundiek, G. Bashiri, M. Höhne, J. Biotechnol. 2016, 230, 11-18;
N. M. Kamerbeek, M. W. Fraaije, D. B. Janssen, Eur. J. Biochem. 2004, 271, 2107-2116.
S. Alpdagtas, B. Binay, Biocatal. Biotransform. 2020, 39, 260-268.
H.-W. Jiang, Q. Chen, J. Pan, G.-W. Zheng, J.-H. Xu, Appl. Biochem. Biotechnol. 2020, 192, 530-543.
V. S. Lamzin, Z. Dauter, V. O. Popov, E. H. Harutyunyan, K. S. Wilson, J. Mol. Biol. 1994, 236, 759-785.
A. E. Serov, A. S. Popova, V. V. Fedorchuk, V. I. Tishkov, Biochem. J. 2002, 367, 841-847;
A. Andreadeli, D. Platis, V. Tishkov, V. Popov, N. E. Labrou, FEBS J. 2008, 275, 3859-3869;
K. Hoelsch, I. Sührer, M. Heusel, D. Weuster-Botz, Appl. Microbiol. Biotechnol. 2013, 97, 2473-2481;
L. Calzadiaz-Ramirez, C. Calvó-Tusell, G. M. Stoffel, S. N. Lindner, S. Osuna, T. J. Erb, M. Garcia-Borràs, A. Bar-Even, C. G. Acevedo-Rocha, ACS Catal. 2020, 10, 7512-7525.
W. Wu, D. Zhu, L. Hua, J. Mol. Catal. B 2009, 61, 157-161.
A. M. Chánique, L. P. Parra, Front. Microbiol. 2018, 9, 194.
T. Geppert, B. Hoy, S. Wessler, G. Schneider, Chem. Biol. 2011, 18, 344-353;
E. Y. Hong, S. G. Lee, B. J. Park, J. M. Lee, H. Yun, B. G. Kim, Biotechnol. J. 2017, 12, 1700278;
A. Bosshart, S. Panke, M. Bechtold, Angew. Chem. 2013, 125, 9855-9858.
J. Jumper, R. Evans, A. Pritzel, T. Green, M. Figurnov, O. Ronneberger, K. Tunyasuvunakool, R. Bates, A. Žídek, A. Potapenko, Nature 2021, 596, 583-589.
V. O. Popov, V. S. Lamzin, Biochem. J. 1994, 301, 625-643.
Q. Chen, B.-B. Li, L. Zhang, X.-R. Chen, X.-X. Zhu, F.-F. Chen, M. Shi, C.-C. Chen, Y. Yang, R.-T. Guo, ACS Catal. 2022, 12, 14795-14803.
F.-F. Chen, X.-F. He, X.-X. Zhu, Z. Zhang, X.-Y. Shen, Q. Chen, J.-H. Xu, N. J. Turner, G.-W. Zheng, J. Am. Chem. Soc. 2023, 145, 4015-4025.
G.-W. Zheng, Y.-Y. Liu, Q. Chen, L. Huang, H.-L. Yu, W.-Y. Lou, C.-X. Li, Y.-P. Bai, A.-T. Li, J.-H. Xu, ACS Catal. 2017, 7, 7174-7181.
N. A. Donoghue, D. B. Norris, P. W. Trudgill, Eur. J. Biochem. 1976, 63, 175-192;
S. M. Ren, F. Liu, Y. Q. Wu, Q. Chen, Z. J. Zhang, H. L. Yu, J. H. Xu, Biotechnol. Bioeng. 2021, 118, 737-744.
W. Kabsch, Acta Crystallogr. Sect. D 2010, 66, 125-132.
A. J. McCoy, Acta Crystallogr. Sect. D 2007, 63, 32-41.
P. Emsley, K. Cowtan, Acta Crystallogr. Sect. D 2004, 60, 2126-2132.
P. D. Adams, P. V. Afonine, G. Bunkóczi, V. B. Chen, I. W. Davis, N. Echols, J. J. Headd, L.-W. Hung, G. J. Kapral, R. W. Grosse-Kunstleve, Acta Crystallogr. Sect. D 2010, 66, 213-221.
O. Trott, A. J. Olson, J. Comput. Chem. 2010, 31, 455-461.
R. Salomon-Ferrer, D. A. Case, R. C. Walker, Wiley Interdiscip. Rev.: Comput. Mol. Sci. 2013, 3, 198-210.
E. Jurrus, D. Engel, K. Star, K. Monson, J. Brandi, L. E. Felberg, D. H. Brookes, L. Wilson, J. Chen, K. Liles, Protein Sci. 2018, 27, 112-128.
J. A. Maier, C. Martinez, K. Kasavajhala, L. Wickstrom, K. E. Hauser, C. Simmerling, J. Chem. Theory Comput. 2015, 11, 3696-3713.
U. C. Singh, P. A. Kollman, J. Comput. Chem. 1984, 5, 129-145.
N. Holmberg, U. Ryde, L. Bülow, Protein Eng. 1999, 12, 851-856.
Y.-K. Qi, Y.-C. Zheng, Q. Chen, Y. He, Z.-J. Zhang, J.-H. Xu, ACS Sustainable Chem. Eng. 2021, 9, 12514-12519.
X. Robert, P. Gouet, Nucleic Acids Res. 2014, 42, W320-W324;
A. Boldt, M. B. Ansorge-Schumacher, Adv. Synth. Catal. 2020, 362, 4109-4118;
V. Tishkov, A. Galkin, A. Egorov, Dokl. Akad. Nauk SSSR. 1991, 317, 745-748;
H. Nanba, Y. Takaoka, J. Hasegawa, Bioscience, Biotechnol., Biochem. 2003, 67, 720-728;
N. Gul-Karaguler, R. B. Sessions, A. R. Clarke, J. J. Holbrook, Biotechnol. Lett. 2001, 23, 283-287;
R. Hatrongjit, K. Packdibamrung, Enzyme Microb. Technol. 2010, 46, 557-561;
S. Alpdağtaş, S. Yücel, H. A. Kapkaç, S. Liu, B. Binay, Biotechnol. Lett. 2018, 40, 1135-1147;
S. Fogal, E. Beneventi, L. Cendron, E. Bergantino, Appl. Microbiol. Biotechnol. 2015, 99, 9541-9554.