Exploring the identity of individual plant cells in space and time.
cellular responses to stimuli
developmental cell trajectories
plant cell identity
regulatory networks
single-cell genomics
spatial transcriptomics
Journal
The New phytologist
ISSN: 1469-8137
Titre abrégé: New Phytol
Pays: England
ID NLM: 9882884
Informations de publication
Date de publication:
10 2023
10 2023
Historique:
received:
02
02
2023
accepted:
17
06
2023
medline:
8
9
2023
pubmed:
24
7
2023
entrez:
24
7
2023
Statut:
ppublish
Résumé
In recent years, single-cell genomics, coupled to imaging techniques, have become the state-of-the-art approach for characterising biological systems. In plant sciences, a variety of tissues and species have been profiled, providing an enormous quantity of data on cell identity at an unprecedented resolution, but what biological insights can be gained from such data sets? Using recently published studies in plant sciences, we will highlight how single-cell technologies have enabled a better comprehension of tissue organisation, cell fate dynamics in development or in response to various stimuli, as well as identifying key transcriptional regulators of cell identity. We discuss the limitations and technical hurdles to overcome, as well as future directions, and the promising use of single-cell omics to understand, predict, and manipulate plant development and physiology.
Types de publication
Journal Article
Review
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
61-67Informations de copyright
© 2023 The Authors New Phytologist © 2023 New Phytologist Foundation.
Références
Plant Biotechnol J. 2022 Mar;20(3):417-419
pubmed: 34882927
Nature. 2023 May;617(7962):785-791
pubmed: 37165193
Plant Biotechnol J. 2022 Apr;20(4):616-618
pubmed: 35038375
Plant Cell. 2022 Aug 25;34(9):3261-3279
pubmed: 35666176
Dev Cell. 2021 Feb 22;56(4):557-568.e6
pubmed: 33400914
Nat Commun. 2023 Apr 3;14(1):1844
pubmed: 37012288
Dev Cell. 2022 Feb 28;57(4):543-560.e9
pubmed: 35134336
Nucleic Acids Res. 2019 May 21;47(9):4539-4553
pubmed: 30873540
Cell. 2021 May 27;184(11):3041-3055.e21
pubmed: 33964211
Plant Physiol. 2022 Feb 4;188(2):861-878
pubmed: 34850215
Genome Biol. 2020 Jul 22;21(1):178
pubmed: 32698836
Dev Cell. 2021 Apr 5;56(7):1043-1055.e4
pubmed: 33823130
Plant Cell. 2019 May;31(5):993-1011
pubmed: 30923229
Dev Cell. 2019 Mar 25;48(6):840-852.e5
pubmed: 30913408
Science. 2022 Aug 12;377(6607):747-751
pubmed: 35951698
Science. 2015 Apr 24;348(6233):aaa6090
pubmed: 25858977
Science. 2021 Dec 24;374(6575):eaba5531
pubmed: 34941412
Nat Biotechnol. 2022 Dec;40(12):1862-1872
pubmed: 35788565
Science. 2023 Mar 31;379(6639):eadf4721
pubmed: 36996230
Nat Plants. 2023 Apr;9(4):515-524
pubmed: 37055554
Proc Natl Acad Sci U S A. 2020 Dec 29;117(52):33689-33699
pubmed: 33318187
Nat Plants. 2021 Nov;7(11):1485-1494
pubmed: 34782768
Nat Biotechnol. 2021 Oct;39(10):1202-1215
pubmed: 33941931
Science. 2022 Mar 4;375(6584):eabf4368
pubmed: 35239373
Cell. 2020 Nov 12;183(4):1103-1116.e20
pubmed: 33098772
Mol Plant. 2019 May 6;12(5):648-660
pubmed: 31004836
Nat Plants. 2023 Jul;9(7):1026-1033
pubmed: 37308583
Genome Biol. 2015 Jan 22;16:9
pubmed: 25608970
Plant J. 2022 Apr;110(1):7-22
pubmed: 35218590
Science. 2020 Nov 13;370(6518):
pubmed: 32943451
Cell. 2022 Dec 22;185(26):5040-5058.e19
pubmed: 36563667
Mol Plant. 2021 Dec 6;14(12):1985-1999
pubmed: 34358681
Nat Methods. 2013 Nov;10(11):1093-5
pubmed: 24056876
Mol Plant. 2023 May 1;16(5):809-828
pubmed: 36895162
Nat Methods. 2022 Oct;19(10):1243-1249
pubmed: 36109677
New Phytol. 2022 Apr;234(2):527-544
pubmed: 35075650
Plant Physiol. 2022 Feb 4;188(2):782-794
pubmed: 34791481
Mol Plant. 2021 Mar 1;14(3):384-394
pubmed: 33352304
Cell Rep. 2019 May 14;27(7):2241-2247.e4
pubmed: 31091459
Plant Cell. 2021 May 5;33(3):511-530
pubmed: 33955487
Plant Cell. 2021 Aug 13;33(7):2197-2220
pubmed: 33822225
Development. 2022 Nov 1;149(21):
pubmed: 36178121
Dev Cell. 2022 May 23;57(10):1299-1310.e4
pubmed: 35512702
Plant Physiol. 2019 Apr;179(4):1444-1456
pubmed: 30718350
Science. 2019 Apr 5;364(6435):52-56
pubmed: 30948545
Genome Biol. 2023 Jan 9;24(1):3
pubmed: 36624504
Nat Plants. 2023 Jan;9(1):179-190
pubmed: 36522449
Mol Plant. 2022 Dec 5;15(12):1868-1888
pubmed: 36321199
Nat Commun. 2021 Jun 7;12(1):3334
pubmed: 34099698
Nature. 2022 Sep;609(7926):375-383
pubmed: 35978191
Mol Plant. 2021 Aug 2;14(8):1362-1378
pubmed: 34062316
Mol Plant. 2021 Mar 1;14(3):372-383
pubmed: 33422696
Cell. 2016 May 19;165(5):1280-1292
pubmed: 27203113
Genome Biol. 2021 Nov 22;22(1):319
pubmed: 34809675
Dev Cell. 2021 Apr 5;56(7):1056-1074.e8
pubmed: 33725481
Mol Plant. 2022 Nov 7;15(11):1807-1824
pubmed: 36307979
Mol Plant. 2020 Aug 3;13(8):1178-1193
pubmed: 32592820
Nat Commun. 2021 Apr 6;12(1):2053
pubmed: 33824350
Nat Plants. 2021 Nov;7(11):1453-1460
pubmed: 34782770