Genomes of cultivated and wild Capsicum species provide insights into pepper domestication and population differentiation.

Capsicum / genetics Domestication Vegetables Fruit / genetics Crops, Agricultural / genetics Camphor Menthol Piper nigrum

Journal

Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555

Informations de publication

Date de publication:
07 09 2023
Historique:
received: 22 06 2023
accepted: 28 08 2023
medline: 11 9 2023
pubmed: 8 9 2023
entrez: 7 9 2023
Statut: epublish

Résumé

Pepper (Capsicum spp.) is one of the earliest cultivated crops and includes five domesticated species, C. annuum var. annuum, C. chinense, C. frutescens, C. baccatum var. pendulum and C. pubescens. Here, we report a pepper graph pan-genome and a genome variation map of 500 accessions from the five domesticated Capsicum species and close wild relatives. We identify highly differentiated genomic regions among the domesticated peppers that underlie their natural variations in flowering time, characteristic flavors, and unique resistances to biotic and abiotic stresses. Domestication sweeps detected in C. annuum var. annuum and C. baccatum var. pendulum are mostly different, and the common domestication traits, including fruit size, shape and pungency, are achieved mainly through the selection of distinct genomic regions between these two cultivated species. Introgressions from C. baccatum into C. chinense and C. frutescens are detected, including those providing genetic sources for various biotic and abiotic stress tolerances.

Identifiants

DOI: 10.1038/s41467-023-41251-4 PMID: 37679363 PMC: PMC10484947
pubmed: 37679363
doi: 10.1038/s41467-023-41251-4
pii: 10.1038/s41467-023-41251-4
pmc: PMC10484947
doi:

Substances chimiques

Camphor 76-22-2
Menthol 1490-04-6

Types de publication

Journal Article Research Support, U.S. Gov't, Non-P.H.S. Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

5487

Informations de copyright

© 2023. Springer Nature Limited.

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Auteurs

Feng Liu (F)

Engineering Research Center for Germplasm Innovation and New Varieties Breeding of Horticultural Crops, Key Laboratory for Vegetable Biology of Hunan Province, College of Horticulture, Hunan Agricultural University, Changsha, China.

Jiantao Zhao (J)

Engineering Research Center for Germplasm Innovation and New Varieties Breeding of Horticultural Crops, Key Laboratory for Vegetable Biology of Hunan Province, College of Horticulture, Hunan Agricultural University, Changsha, China.
Boyce Thompson Institute, Ithaca, NY, USA.
ORCID: 0000-0002-5140-8220

Honghe Sun (H)

Boyce Thompson Institute, Ithaca, NY, USA.
Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, USA.
ORCID: 0000-0002-2468-6823

Cheng Xiong (C)

Engineering Research Center for Germplasm Innovation and New Varieties Breeding of Horticultural Crops, Key Laboratory for Vegetable Biology of Hunan Province, College of Horticulture, Hunan Agricultural University, Changsha, China.

Xuepeng Sun (X)

Boyce Thompson Institute, Ithaca, NY, USA.
College of Horticulture Science, Zhejiang A&F University, Hangzhou, China.
ORCID: 0000-0002-5896-9004

Xin Wang (X)

Boyce Thompson Institute, Ithaca, NY, USA.
Department of Vegetable Crops, College of Horticulture and Forestry, Huazhong Agricultural University, Wuhan, China.

Zhongyi Wang (Z)

Engineering Research Center for Germplasm Innovation and New Varieties Breeding of Horticultural Crops, Key Laboratory for Vegetable Biology of Hunan Province, College of Horticulture, Hunan Agricultural University, Changsha, China.

Robert Jarret (R)

U.S. Department of Agriculture-Agricultural Research Service, Plant Genetic Resources Conservation Unit, Griffin, GA, USA.
ORCID: 0000-0002-0426-6186

Jin Wang (J)

Engineering Research Center for Germplasm Innovation and New Varieties Breeding of Horticultural Crops, Key Laboratory for Vegetable Biology of Hunan Province, College of Horticulture, Hunan Agricultural University, Changsha, China.
ORCID: 0000-0002-4687-1325

Bingqian Tang (B)

Engineering Research Center for Germplasm Innovation and New Varieties Breeding of Horticultural Crops, Key Laboratory for Vegetable Biology of Hunan Province, College of Horticulture, Hunan Agricultural University, Changsha, China.

Hao Xu (H)

Engineering Research Center for Germplasm Innovation and New Varieties Breeding of Horticultural Crops, Key Laboratory for Vegetable Biology of Hunan Province, College of Horticulture, Hunan Agricultural University, Changsha, China.

Bowen Hu (B)

Engineering Research Center for Germplasm Innovation and New Varieties Breeding of Horticultural Crops, Key Laboratory for Vegetable Biology of Hunan Province, College of Horticulture, Hunan Agricultural University, Changsha, China.

Huan Suo (H)

Engineering Research Center for Germplasm Innovation and New Varieties Breeding of Horticultural Crops, Key Laboratory for Vegetable Biology of Hunan Province, College of Horticulture, Hunan Agricultural University, Changsha, China.

Bozhi Yang (B)

Engineering Research Center for Germplasm Innovation and New Varieties Breeding of Horticultural Crops, Key Laboratory for Vegetable Biology of Hunan Province, College of Horticulture, Hunan Agricultural University, Changsha, China.

Lijun Ou (L)

Engineering Research Center for Germplasm Innovation and New Varieties Breeding of Horticultural Crops, Key Laboratory for Vegetable Biology of Hunan Province, College of Horticulture, Hunan Agricultural University, Changsha, China.

Xuefeng Li (X)

Institute of Vegetable Research, Hunan Academy of Agricultural Science, Changsha, China.

Shudong Zhou (S)

Institute of Vegetable Research, Hunan Academy of Agricultural Science, Changsha, China.

Sha Yang (S)

Institute of Vegetable Research, Hunan Academy of Agricultural Science, Changsha, China.

Zhoubing Liu (Z)

Engineering Research Center for Germplasm Innovation and New Varieties Breeding of Horticultural Crops, Key Laboratory for Vegetable Biology of Hunan Province, College of Horticulture, Hunan Agricultural University, Changsha, China.
ORCID: 0000-0002-9431-7812

Fang Yuan (F)

Engineering Research Center for Germplasm Innovation and New Varieties Breeding of Horticultural Crops, Key Laboratory for Vegetable Biology of Hunan Province, College of Horticulture, Hunan Agricultural University, Changsha, China.

Zhenming Pei (Z)

Engineering Research Center for Germplasm Innovation and New Varieties Breeding of Horticultural Crops, Key Laboratory for Vegetable Biology of Hunan Province, College of Horticulture, Hunan Agricultural University, Changsha, China.

Yanqing Ma (Y)

Engineering Research Center for Germplasm Innovation and New Varieties Breeding of Horticultural Crops, Key Laboratory for Vegetable Biology of Hunan Province, College of Horticulture, Hunan Agricultural University, Changsha, China.

Xiongze Dai (X)

Engineering Research Center for Germplasm Innovation and New Varieties Breeding of Horticultural Crops, Key Laboratory for Vegetable Biology of Hunan Province, College of Horticulture, Hunan Agricultural University, Changsha, China.

Shan Wu (S)

Boyce Thompson Institute, Ithaca, NY, USA. sw728@cornell.edu.
ORCID: 0000-0001-8539-3808

Zhangjun Fei (Z)

Boyce Thompson Institute, Ithaca, NY, USA. zf25@cornell.edu.
U.S. Department of Agriculture-Agricultural Research Service, Robert W. Holley Center for Agriculture and Health, Ithaca, NY, USA. zf25@cornell.edu.
ORCID: 0000-0001-9684-1450

Xuexiao Zou (X)

Engineering Research Center for Germplasm Innovation and New Varieties Breeding of Horticultural Crops, Key Laboratory for Vegetable Biology of Hunan Province, College of Horticulture, Hunan Agricultural University, Changsha, China. zouxuexiao428@163.com.
ORCID: 0000-0002-7045-8047

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Classifications MeSH

questionsmedicales.fr › Eucaryotes › Viridiplantae › Streptophyta › Embryophyta › Tracheobionta › Magnoliopsida › Solanales › Solanaceae › Capsicum › Genomes of cultivated and wild Capsicum...
questionsmedicales.fr › Technologie, industrie et agriculture › Agriculture › Domestication › Genomes of cultivated and wild Capsicum...
questionsmedicales.fr › Aliments et boissons › Aliments › Légumes › Genomes of cultivated and wild Capsicum...
questionsmedicales.fr › Aliments et boissons › Aliments › Fruit › Genomes of cultivated and wild Capsicum...
questionsmedicales.fr › Aliments et boissons › Aliments › Produits agricoles › Genomes of cultivated and wild Capsicum...
questionsmedicales.fr › Composés polycycliques › Composés pontés › Composés bicycliques pontés › Monoterpènes de type norbornane › Monoterpènes de type bornane › Camphre › Genomes of cultivated and wild Capsicum...
questionsmedicales.fr › Lipides › Alcools gras › Hexanols › Cyclohexanols › Menthol › Genomes of cultivated and wild Capsicum...
questionsmedicales.fr › Eucaryotes › Viridiplantae › Streptophyta › Embryophyta › Tracheobionta › Magnoliopsida › Piperaceae › Piper › Piper nigrum › Genomes of cultivated and wild Capsicum...