C2CAplus: A One-Pot Isothermal Circle-to-Circle DNA Amplification System.

DNA replication cell-free synthetic biology circle-to-circle amplification phi29 rolling circle amplification synthetic biology

Journal

ACS synthetic biology
ISSN: 2161-5063
Titre abrégé: ACS Synth Biol
Pays: United States
ID NLM: 101575075

Informations de publication

Date de publication:
20 10 2023
Historique:
medline: 23 10 2023
pubmed: 20 9 2023
entrez: 20 9 2023
Statut: ppublish

Résumé

Rolling circle amplification (RCA) is a widely used DNA amplification method that uses circular template DNA as input and produces multimeric, linear single- or double-stranded DNA. Circle-to-circle amplification (C2CA) has further expanded this method by implementing product recircularization using restriction and ligation, leading to a higher amplification yield and enabling the generation of circular products. However, C2CA is a multistep, nonisothermal method, requiring multiple fluid manipulations and thereby compromises several advantages of RCA. Here, we improved C2CA to implement a one-pot, single step, isothermal reaction at temperatures ranging from 25 to 37 °C. Our C2CAplus method is simple, robust, and produces large quantities of product DNA that can be seen with the naked eye.

Identifiants

pubmed: 37729629
doi: 10.1021/acssynbio.3c00390
pmc: PMC10594867
doi:

Substances chimiques

DNA 9007-49-2
DNA, Circular 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

3137-3142

Références

Trends Biotechnol. 2021 Nov;39(11):1160-1172
pubmed: 33715868
Biosensors (Basel). 2022 Aug 24;12(9):
pubmed: 36140062
Proc Natl Acad Sci U S A. 2004 Mar 30;101(13):4548-53
pubmed: 15070755
Chem Commun (Camb). 2019 May 2;55(37):5375-5378
pubmed: 30994649
J Biol Chem. 1989 May 25;264(15):8935-40
pubmed: 2498321
Science. 1994 Sep 30;265(5181):2085-8
pubmed: 7522346
Nat Commun. 2020 Feb 14;11(1):904
pubmed: 32060271
Anal Chim Acta. 2015 Jan 1;853:30-45
pubmed: 25467448
Adv Mater. 2020 Jan;32(3):e1806538
pubmed: 31379017
ACS Synth Biol. 2020 Jul 17;9(7):1771-1780
pubmed: 32674580
J Biochem. 2004 Mar;135(3):397-403
pubmed: 15113838
Nucleic Acids Res. 1998 Nov 15;26(22):5073-8
pubmed: 9801302
Talanta. 2023 Feb 1;253:123977
pubmed: 36201957
Sci Rep. 2018 Aug 30;8(1):13089
pubmed: 30166584
Acc Chem Res. 2016 Nov 15;49(11):2540-2550
pubmed: 27797171
Sci Rep. 2015 May 27;5:10404
pubmed: 26013404
Nat Commun. 2018 Apr 20;9(1):1583
pubmed: 29679002
ACS Synth Biol. 2021 Dec 17;10(12):3507-3517
pubmed: 34781676

Auteurs

Laura Grasemann (L)

Institute of Bioengineering, School of Engineering, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland.

Paula Thiel Pizarro (P)

Institute of Bioengineering, School of Engineering, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland.

Sebastian J Maerkl (SJ)

Institute of Bioengineering, School of Engineering, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland.

Articles similaires

Nucleic Acid Amplification Techniques Humans Point-of-Care Testing Sensitivity and Specificity Malaria
DNA Methylation Humans DNA Animals Machine Learning
DNA Glycosylases Nucleosomes Humans 8-Hydroxy-2'-Deoxyguanosine DNA Repair
Alleles Benchmarking Transcription Factors Humans Chromatin Immunoprecipitation Sequencing

Classifications MeSH