In-silicon studies on hydration in EcoRI-cognate DNA complex.

Deoxyribonuclease EcoRI / chemistry Silicon Binding Sites Base Sequence DNA / chemistry Phosphates Substrate Specificity Kinetics
DNA cleavage Hydrogen bonds Restriction endonuclease Role of water in DNA cleavage Steered molecular dynamics simulations (SMD) Stopped SMD

Journal

Biophysical chemistry
ISSN: 1873-4200
Titre abrégé: Biophys Chem
Pays: Netherlands
ID NLM: 0403171

Informations de publication

Date de publication:
Dec 2023
Historique:
received: 26 04 2023
revised: 27 09 2023
accepted: 01 10 2023
medline: 10 11 2023
pubmed: 15 10 2023
entrez: 14 10 2023
Statut: ppublish

Résumé

Restriction endonucleases (REs) cleave DNA at specific site in presence of Mg

Identifiants

DOI: 10.1016/j.bpc.2023.107121 PMID: 37837721
pubmed: 37837721
pii: S0301-4622(23)00172-2
doi: 10.1016/j.bpc.2023.107121
pii:
doi:

Substances chimiques

Deoxyribonuclease EcoRI EC 3.1.21.-
Silicon Z4152N8IUI
DNA 9007-49-2
Phosphates 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

107121

Informations de copyright

Copyright © 2023 Elsevier B.V. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of Competing Interest The authors declare no competing financial interest.

Auteurs

Sasthi Charan Mandal (SC)

Department of Physics of Complex Systems, S.N. Bose National Centre for Basic Sciences, Block JD, Sector III, Salt Lake, Kolkata 700106, India.

Jaydeb Chakrabarti (J)

Department of Physics of Complex Systems, S.N. Bose National Centre for Basic Sciences, Block JD, Sector III, Salt Lake, Kolkata 700106, India.. Electronic address: jaydeb@bose.res.in.

Articles similaires

Membrane potential stimulates ADP import and ATP export by the mitochondrial ADP/ATP carrier due to its positively charged binding site.

Vasiliki Mavridou, Martin S King, Andre Bazzone et al.
1.00
Adenosine Triphosphate Adenosine Diphosphate Mitochondrial ADP, ATP Translocases Binding Sites Mitochondria

Conservation of the cooling agent binding pocket within the TRPM subfamily.

Kate Huffer, Matthew C S Denley, Elisabeth V Oskoui et al.
1.00
TRPM Cation Channels Animals Binding Sites Mice Pyrimidinones

A head-to-head comparison of MM/PBSA and MM/GBSA in predicting binding affinities for the CB

Mei Qian Yau, Clarence W Y Liew, Jing Hen Toh et al.
1.00
Receptor, Cannabinoid, CB1 Ligands Molecular Dynamics Simulation Protein Binding Thermodynamics

Mutational analysis of Phanerochaete chrysosporium´s purine transporter.

Mariana Barraco-Vega, Manuel Sanguinetti, Gabriela da Rosa et al.
1.00
Phanerochaete Fungal Proteins Purines Aspergillus nidulans DNA Mutational Analysis

Classifications MeSH

questionsmedicales.fr › Enzymes et coenzymes › Enzymes › Hydrolases › Esterases › Endonucleases › Endodeoxyribonucleases › DNA restriction enzymes › Type II site-specific deoxyribonuclease › Deoxyribonuclease EcoRI › In-silicon studies on hydration in...
questionsmedicales.fr › Produits chimiques inorganiques › Éléments › Métalloïdes › Silicium › In-silicon studies on hydration in...
questionsmedicales.fr › Phénomènes chimiques › Phénomènes biochimiques › Sites de fixation › In-silicon studies on hydration in...
questionsmedicales.fr › Sciences de l'information › Sources d'information › Services d'information › Documentation › Données de séquences moléculaires › Séquence nucléotidique › In-silicon studies on hydration in...
questionsmedicales.fr › Acides nucléiques, nucléotides et nucléosides › Acides nucléiques › ADN › In-silicon studies on hydration in...
questionsmedicales.fr › Produits chimiques inorganiques › Composés du phosphore › Acides du phosphore › Acides phosphoriques › Phosphates › In-silicon studies on hydration in...
questionsmedicales.fr › Phénomènes chimiques › Phénomènes biochimiques › Spécificité du substrat › In-silicon studies on hydration in...
questionsmedicales.fr › Phénomènes chimiques › Phénomènes biochimiques › Cinétique › In-silicon studies on hydration in...