A comparison of neuroelectrophysiology databases.

Neurophysiology Databases, Factual Information Dissemination

Journal

Scientific data
ISSN: 2052-4463
Titre abrégé: Sci Data
Pays: England
ID NLM: 101640192

Informations de publication

Date de publication:
19 10 2023
Historique:
received: 13 04 2023
accepted: 02 10 2023
medline: 23 10 2023
pubmed: 20 10 2023
entrez: 19 10 2023
Statut: epublish

Résumé

As data sharing has become more prevalent, three pillars - archives, standards, and analysis tools - have emerged as critical components in facilitating effective data sharing and collaboration. This paper compares four freely available intracranial neuroelectrophysiology data repositories: Data Archive for the BRAIN Initiative (DABI), Distributed Archives for Neurophysiology Data Integration (DANDI), OpenNeuro, and Brain-CODE. The aim of this review is to describe archives that provide researchers with tools to store, share, and reanalyze both human and non-human neurophysiology data based on criteria that are of interest to the neuroscientific community. The Brain Imaging Data Structure (BIDS) and Neurodata Without Borders (NWB) are utilized by these archives to make data more accessible to researchers by implementing a common standard. As the necessity for integrating large-scale analysis into data repository platforms continues to grow within the neuroscientific community, this article will highlight the various analytical and customizable tools developed within the chosen archives that may advance the field of neuroinformatics.

Identifiants

DOI: 10.1038/s41597-023-02614-0 PMID: 37857685 PMC: PMC10587056
pubmed: 37857685
doi: 10.1038/s41597-023-02614-0
pii: 10.1038/s41597-023-02614-0
pmc: PMC10587056
doi:

Types de publication

Review Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

719

Subventions

Organisme : NIMH NIH HHS
ID : R24 MH117179
Pays : United States
Organisme : NIMH NIH HHS
ID : R24 MH120037
Pays : United States
Organisme : NIMH NIH HHS
ID : R24 MH117529
Pays : United States
Organisme : NIMH NIH HHS
ID : R24 MH117295
Pays : United States
Organisme : NIMH NIH HHS
ID : R01 MH111417
Pays : United States
Organisme : NIMH NIH HHS
ID : R24 MH116922
Pays : United States
Organisme : NINDS NIH HHS
ID : R37 NS021135
Pays : United States
Organisme : NIMH NIH HHS
ID : R24 MH114796
Pays : United States

Commentaires et corrections

Type : UpdateOf

Informations de copyright

© 2023. Springer Nature Limited.

Références

Front Neuroinform. 2018 May 23;12:28
pubmed: 29875648
Clin Neurophysiol. 2003 Sep;114(9):1755-61
pubmed: 12948806
Database (Oxford). 2022 Nov 11;2022:
pubmed: 36367313
Epilepsia. 2012 Sep;53(9):1669-76
pubmed: 22738131
Sci Transl Med. 2022 Jan 19;14(628):eabj1441
pubmed: 35044788
Neuroimage. 2021 Dec 15;245:118766
pubmed: 34848298
Front Neurosci. 2016 Jun 27;10:295
pubmed: 27445666
Elife. 2021 Oct 18;10:
pubmed: 34658334
Front Genet. 2019 Mar 29;10:191
pubmed: 30984233
Neuroimage. 2020 Dec;223:117341
pubmed: 32920161
Rev Sci Instrum. 2018 May;89(5):053705
pubmed: 29864842
Neuron. 2022 Feb 16;110(4):600-612
pubmed: 34914921
Sci Data. 2022 Apr 21;9(1):184
pubmed: 35449141
Front Neuroinform. 2023 May 18;17:1158378
pubmed: 37274750
Neuroinformatics. 2008 Spring;6(1):47-55
pubmed: 18259695
J Clin Neurophysiol. 2015 Jun;32(3):235-9
pubmed: 26035676
Neuroimage. 2022 Oct 15;260:119438
pubmed: 35792291
IEEE Trans Biomed Circuits Syst. 2016 Jun;10(3):693-706
pubmed: 26529783
Neuroinformatics. 2007 Spring;5(1):11-34
pubmed: 17426351
Transl Psychiatry. 2021 Nov 3;11(1):551
pubmed: 34728599
Science. 2013 May 10;340(6133):687-8
pubmed: 23661744
Handb Clin Neurol. 2020;168:263-277
pubmed: 32164858
J Neurooncol. 2021 Jan;151(2):249-256
pubmed: 33170473
Nat Med. 2021 Dec;27(12):2154-2164
pubmed: 34887577
Proc Natl Acad Sci U S A. 2020 Mar 17;117(11):6170-6177
pubmed: 32127481
Sci Data. 2023 Feb 9;10(1):83
pubmed: 36759619
Neurology. 2010 Jan 19;74(3):201-9
pubmed: 20042704
Alzheimers Dement. 2005 Jul;1(1):55-66
pubmed: 17476317
Insight J. 2006;2006:209
pubmed: 25364771
Sci Data. 2019 Jun 25;6(1):102
pubmed: 31239438
Elife. 2022 Oct 04;11:
pubmed: 36193886
Cell. 2020 Nov 12;183(4):935-953.e19
pubmed: 33186530
Nature. 2021 Oct;598(7879):86-102
pubmed: 34616075
Nat Methods. 2021 Dec;18(12):1496-1498
pubmed: 34845388
Can J Neurol Sci. 2014 Nov;41(6):683-93
pubmed: 25431206

Auteurs

Priyanka Subash (P)

Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles, CA, 90033, USA.

Alex Gray (A)

Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles, CA, 90033, USA.

Misque Boswell (M)

Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles, CA, 90033, USA.

Samantha L Cohen (SL)

Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles, CA, 90033, USA.
ORCID: 0000-0003-4961-4129

Rachael Garner (R)

Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles, CA, 90033, USA.

Sana Salehi (S)

Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles, CA, 90033, USA.

Calvary Fisher (C)

Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles, CA, 90033, USA.

Samuel Hobel (S)

Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles, CA, 90033, USA.

Satrajit Ghosh (S)

McGovern Institute for Brain Research, MIT Brain and Cognitive Sciences, 77 Massachusetts Avenue, Cambridge, MA, 02139, USA.
ORCID: 0000-0002-5312-6729

Yaroslav Halchenko (Y)

Department of Psychological & Brain Sciences, Center for Cognitive Neuroscience, Dartmouth Brain Imaging Center, Dartmouth College, 6207 Moore Hall, Hanover, NH, 03755, USA.
ORCID: 0000-0003-3456-2493

Benjamin Dichter (B)

CatalystNeuro, Benicia, CA, 94510, USA.

Russell A Poldrack (RA)

Department of Psychology, Stanford University, 450 Jane Stanford Way, Stanford, CA, 94305, USA.

Chris Markiewicz (C)

Department of Psychology, Stanford University, 450 Jane Stanford Way, Stanford, CA, 94305, USA.
ORCID: 0000-0002-6533-164X

Dora Hermes (D)

Mayo Clinic, Department of Physiology & Biomedical Engineering, 200 1st Street SW, Rochester, MN, 55905, USA.
ORCID: 0000-0002-8683-8909

Arnaud Delorme (A)

Swartz Center of Computational Neuroscience, INC, University of California San Diego, La Jolla, CA, 92093, USA.

Scott Makeig (S)

Swartz Center of Computational Neuroscience, INC, University of California San Diego, La Jolla, CA, 92093, USA.

Brendan Behan (B)

Ontario Brain Institute, 1 Richmond Street West, Toronto, ON, M5H 3W4, Canada.
ORCID: 0000-0003-4568-7355

Alana Sparks (A)

Indoc Research, Toronto, ON, Canada.

Stephen R Arnott (SR)

Rotman Research Institute, Toronto, ON, Canada.

Zhengjia Wang (Z)

Department of Neurosurgery, Perelman School of Medicine, University of Pennsylvania, 3700 Hamilton Walk, Philadelphia, PA, 19104, USA.
ORCID: 0000-0001-5629-1116

John Magnotti (J)

Department of Neurosurgery, Perelman School of Medicine, University of Pennsylvania, 3700 Hamilton Walk, Philadelphia, PA, 19104, USA.

Michael S Beauchamp (MS)

Department of Neurosurgery, Perelman School of Medicine, University of Pennsylvania, 3700 Hamilton Walk, Philadelphia, PA, 19104, USA.

Nader Pouratian (N)

Department of Neurological Surgery, University of Texas Southwestern Medical Center, 5303 Harry Hines Blvd, Dallas, TX, 75390, USA.

Arthur W Toga (AW)

Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles, CA, 90033, USA.

Dominique Duncan (D)

Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles, CA, 90033, USA. duncand@usc.edu.
ORCID: 0000-0002-6154-9262

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Classifications MeSH

questionsmedicales.fr › Disciplines des sciences naturelles › Disciplines des sciences biologiques › Physiologie › Neurophysiologie › A comparison of neuroelectrophysiology databases.
questionsmedicales.fr › Sciences de l'information › Mémorisation et recherche des informations › Bases de données comme sujet › Bases de données factuelles › A comparison of neuroelectrophysiology databases.
questionsmedicales.fr › Sciences de l'information › Communication › Diffusion de l'information › A comparison of neuroelectrophysiology databases.