Interior Operators and Their Relationship to Autocatalytic Networks.

Autocatalytic network Directed graphs Idempotent functions Union-closed sets

Journal

Acta biotheoretica
ISSN: 1572-8358
Titre abrégé: Acta Biotheor
Pays: Netherlands
ID NLM: 0421520

Informations de publication

Date de publication:
27 Oct 2023
Historique:
received: 15 06 2023
accepted: 10 10 2023
medline: 30 10 2023
pubmed: 27 10 2023
entrez: 27 10 2023
Statut: epublish

Résumé

The emergence of an autocatalytic network from an available set of elements is a fundamental step in early evolutionary processes, such as the origin of metabolism. Given the set of elements, the reactions between them (chemical or otherwise), and with various elements catalysing certain reactions, a Reflexively Autocatalytic F-generated (RAF) set is a subset R[Formula: see text] of reactions that is self-generating from a given food set, and with each reaction in R[Formula: see text] being catalysed from within R[Formula: see text]. RAF theory has been applied to various phenomena in theoretical biology, and a key feature of the approach is that it is possible to efficiently identify and classify RAFs within large systems. This is possible because RAFs can be described as the (nonempty) subsets of the reactions that are the fixed points of an (efficiently computable) interior map that operates on subsets of reactions. Although the main generic results concerning RAFs can be derived using just this property, we show that for systems with at least 12 reactions there are generic results concerning RAFs that cannot be proven using the interior operator property alone.Kindly check and confirm the edit made in the title.I confirm that the edit is fine.

Identifiants

pubmed: 37889353
doi: 10.1007/s10441-023-09472-8
pii: 10.1007/s10441-023-09472-8
pmc: PMC10611851
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

21

Informations de copyright

© 2023. The Author(s).

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Auteurs

Mike Steel (M)

Biomathematics Research Centre, University of Canterbury, Christchurch, New Zealand. mathmomike@gmail.com.

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Classifications MeSH