Unified topological inference for brain networks in temporal lobe epilepsy using the Wasserstein distance.
Journal
NeuroImage
ISSN: 1095-9572
Titre abrégé: Neuroimage
Pays: United States
ID NLM: 9215515
Informations de publication
Date de publication:
15 Dec 2023
15 Dec 2023
Historique:
received:
15
05
2023
revised:
14
09
2023
accepted:
30
10
2023
medline:
6
12
2023
pubmed:
7
11
2023
entrez:
6
11
2023
Statut:
ppublish
Résumé
Persistent homology offers a powerful tool for extracting hidden topological signals from brain networks. It captures the evolution of topological structures across multiple scales, known as filtrations, thereby revealing topological features that persist over these scales. These features are summarized in persistence diagrams, and their dissimilarity is quantified using the Wasserstein distance. However, the Wasserstein distance does not follow a known distribution, posing challenges for the application of existing parametric statistical models. To tackle this issue, we introduce a unified topological inference framework centered on the Wasserstein distance. Our approach has no explicit model and distributional assumptions. The inference is performed in a completely data driven fashion. We apply this method to resting-state functional magnetic resonance images (rs-fMRI) of temporal lobe epilepsy patients collected from two different sites: the University of Wisconsin-Madison and the Medical College of Wisconsin. Importantly, our topological method is robust to variations due to sex and image acquisition, obviating the need to account for these variables as nuisance covariates. We successfully localize the brain regions that contribute the most to topological differences. A MATLAB package used for all analyses in this study is available at https://github.com/laplcebeltrami/PH-STAT.
Identifiants
pubmed: 37931870
pii: S1053-8119(23)00587-6
doi: 10.1016/j.neuroimage.2023.120436
pii:
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
120436Subventions
Organisme : NINDS NIH HHS
ID : R01 NS117568
Pays : United States
Organisme : NINDS NIH HHS
ID : R01 NS111022
Pays : United States
Organisme : NIA NIH HHS
ID : R01 AG063849
Pays : United States
Organisme : NINDS NIH HHS
ID : R01 NS123378
Pays : United States
Organisme : NINDS NIH HHS
ID : R01 NS105646
Pays : United States
Commentaires et corrections
Type : UpdateOf
Informations de copyright
Copyright © 2023. Published by Elsevier Inc.
Déclaration de conflit d'intérêts
Declaration of competing interest The study was approved and follows the University of Wisconsin-Madison and Medical College of Wisconsin IRB protocols. The study was conducted ethically following the IRB protocol. The epilepsy data is not available due to the IRB protocol.