Unified topological inference for brain networks in temporal lobe epilepsy using the Wasserstein distance.


Journal

NeuroImage
ISSN: 1095-9572
Titre abrégé: Neuroimage
Pays: United States
ID NLM: 9215515

Informations de publication

Date de publication:
15 Dec 2023
Historique:
received: 15 05 2023
revised: 14 09 2023
accepted: 30 10 2023
medline: 6 12 2023
pubmed: 7 11 2023
entrez: 6 11 2023
Statut: ppublish

Résumé

Persistent homology offers a powerful tool for extracting hidden topological signals from brain networks. It captures the evolution of topological structures across multiple scales, known as filtrations, thereby revealing topological features that persist over these scales. These features are summarized in persistence diagrams, and their dissimilarity is quantified using the Wasserstein distance. However, the Wasserstein distance does not follow a known distribution, posing challenges for the application of existing parametric statistical models. To tackle this issue, we introduce a unified topological inference framework centered on the Wasserstein distance. Our approach has no explicit model and distributional assumptions. The inference is performed in a completely data driven fashion. We apply this method to resting-state functional magnetic resonance images (rs-fMRI) of temporal lobe epilepsy patients collected from two different sites: the University of Wisconsin-Madison and the Medical College of Wisconsin. Importantly, our topological method is robust to variations due to sex and image acquisition, obviating the need to account for these variables as nuisance covariates. We successfully localize the brain regions that contribute the most to topological differences. A MATLAB package used for all analyses in this study is available at https://github.com/laplcebeltrami/PH-STAT.

Identifiants

pubmed: 37931870
pii: S1053-8119(23)00587-6
doi: 10.1016/j.neuroimage.2023.120436
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

120436

Subventions

Organisme : NINDS NIH HHS
ID : R01 NS117568
Pays : United States
Organisme : NINDS NIH HHS
ID : R01 NS111022
Pays : United States
Organisme : NIA NIH HHS
ID : R01 AG063849
Pays : United States
Organisme : NINDS NIH HHS
ID : R01 NS123378
Pays : United States
Organisme : NINDS NIH HHS
ID : R01 NS105646
Pays : United States

Commentaires et corrections

Type : UpdateOf

Informations de copyright

Copyright © 2023. Published by Elsevier Inc.

Déclaration de conflit d'intérêts

Declaration of competing interest The study was approved and follows the University of Wisconsin-Madison and Medical College of Wisconsin IRB protocols. The study was conducted ethically following the IRB protocol. The epilepsy data is not available due to the IRB protocol.

Auteurs

Moo K Chung (MK)

Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, USA. Electronic address: mkchung@wisc.edu.

Camille Garcia Ramos (CG)

Department of Neurology, University of Wisconsin-Madison, USA. Electronic address: garciaramos@wisc.edu.

Felipe Branco De Paiva (FB)

Department of Neurology, University of Wisconsin-Madison, USA. Electronic address: fbpaiva@neurology.wisc.edu.

Jedidiah Mathis (J)

Department of Neurology, Medical College of Wisconsin, USA. Electronic address: jmathis@mcw.edu.

Vivek Prabhakaran (V)

Department of Radiology, University of Wisconsin-Madison, USA. Electronic address: prabhakaran@wisc.edu.

Veena A Nair (VA)

Department of Radiology, University of Wisconsin-Madison, USA. Electronic address: vnair@uwhealth.org.

Mary E Meyerand (ME)

Departments of Medical Physics & Biomedical Engineering, University of Wisconsin-Madison, USA. Electronic address: memeyerand@wisc.edu.

Bruce P Hermann (BP)

Department of Neurology, University of Wisconsin-Madison, USA. Electronic address: hermann@neurology.wisc.edu.

Jeffrey R Binder (JR)

Department of Neurology, Medical College of Wisconsin, USA. Electronic address: jbinder@mcw.edu.

Aaron F Struck (AF)

Department of Neurology, University of Wisconsin-Madison, USA. Electronic address: struck@neurology.wisc.edu.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH