Distribution of Small RNAs Along Transposable Elements in Vitis vinifera During Somatic Embryogenesis.
Degradome
Small RNAs
Somatic embryos
Transposable elements
Vitis vinifera
Journal
Methods in molecular biology (Clifton, N.J.)
ISSN: 1940-6029
Titre abrégé: Methods Mol Biol
Pays: United States
ID NLM: 9214969
Informations de publication
Date de publication:
2024
2024
Historique:
medline:
11
12
2023
pubmed:
7
12
2023
entrez:
7
12
2023
Statut:
ppublish
Résumé
Metaviridae is a family of reverse-transcribing viruses, closely related to retroviruses; they exist within their host's DNA as transposable elements. Transposable element study requires the use of specialized tools, in part because of their repetitive nature. By combining data from transcript RNA-Seq, small RNA-Seq, and parallel analysis of RNA ends-Seq from grapevine somatic embryos, we set up a bioinformatics flowchart that could be able to assemble and identify transposable elements.
Identifiants
pubmed: 38060132
doi: 10.1007/978-1-0716-3515-5_19
doi:
Substances chimiques
DNA Transposable Elements
0
RNA
63231-63-0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
279-286Informations de copyright
© 2024. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.
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