Long-Read Nanopore-Based Sequencing of Anelloviruses.

Anelloviridae / genetics Humans High-Throughput Nucleotide Sequencing / methods Metagenomics / methods Genome, Viral Nanopore Sequencing / methods Nanopores DNA, Viral / genetics Virome / genetics Sequence Analysis, DNA / methods
bioinformatics circular viral genomes metagenomics plasma rolling circle amplification virome

Journal

Viruses
ISSN: 1999-4915
Titre abrégé: Viruses
Pays: Switzerland
ID NLM: 101509722

Informations de publication

Date de publication:
02 May 2024
Historique:
received: 05 04 2024
revised: 27 04 2024
accepted: 30 04 2024
medline: 25 5 2024
pubmed: 25 5 2024
entrez: 25 5 2024
Statut: epublish

Résumé

Routinely used metagenomic next-generation sequencing (mNGS) techniques often fail to detect low-level viremia (<10

Identifiants

DOI: 10.3390/v16050723 PMID: 38793605
pubmed: 38793605
pii: v16050723
doi: 10.3390/v16050723
pii:
doi:

Substances chimiques

DNA, Viral 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : NIDA NIH HHS
ID : DP2DA056130
Pays : United States
Organisme : NIDA NIH HHS
ID : R01DA058567
Pays : United States
Organisme : NIDA NIH HHS
ID : R21DA053145
Pays : United States

Auteurs

Raghavendran Anantharam (R)

Division of Infectious Diseases, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.

Dylan Duchen (D)

Center for Biomedical Data Science, Yale University School of Medicine, New Haven, CT 06511, USA.
Department of Pathology, Yale University School of Medicine, New Haven, CT 06519, USA.
ORCID: 0000-0001-5629-2012

Andrea L Cox (AL)

Division of Infectious Diseases, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.

Winston Timp (W)

Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21218, USA.

David L Thomas (DL)

Division of Infectious Diseases, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.

Steven J Clipman (SJ)

Division of Infectious Diseases, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
ORCID: 0000-0002-2366-8420

Abraham J Kandathil (AJ)

Division of Infectious Diseases, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
ORCID: 0000-0002-9038-134X

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Classifications MeSH

questionsmedicales.fr › Virus › Virus non classés › Anellovirus › Long-Read Nanopore-Based Sequencing of Anelloviruses.
questionsmedicales.fr › Eucaryotes › Animaux › Chordés › Vertébrés › Mammifères › Eutheria › Primates › Haplorhini › Catarrhini › Hominidae › Humains › Long-Read Nanopore-Based Sequencing of Anelloviruses.
questionsmedicales.fr › Techniques d'investigation › Techniques génétiques › Analyse de séquence › Séquençage nucléotidique à haut débit › Long-Read Nanopore-Based Sequencing of Anelloviruses.
questionsmedicales.fr › Disciplines des sciences naturelles › Disciplines des sciences biologiques › Biologie › Génétique › Génomique › Métagénomique › Long-Read Nanopore-Based Sequencing of Anelloviruses.
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Génome microbien › Génome viral › Long-Read Nanopore-Based Sequencing of Anelloviruses.
questionsmedicales.fr › Techniques d'investigation › Techniques génétiques › Analyse de séquence › Séquençage par nanopores › Long-Read Nanopore-Based Sequencing of Anelloviruses.
questionsmedicales.fr › Technologie, industrie et agriculture › Produits manufacturés › Nanostructures › Nanopores › Long-Read Nanopore-Based Sequencing of Anelloviruses.
questionsmedicales.fr › Acides nucléiques, nucléotides et nucléosides › Acides nucléiques › ADN › ADN viral › Long-Read Nanopore-Based Sequencing of Anelloviruses.
questionsmedicales.fr › Environnement et santé publique › Environnement › Écosystème › Biodiversité › Biote › Microbiote › Virome › Long-Read Nanopore-Based Sequencing of Anelloviruses.
questionsmedicales.fr › Techniques d'investigation › Techniques génétiques › Analyse de séquence › Analyse de séquence d'ADN › Long-Read Nanopore-Based Sequencing of Anelloviruses.