Global Spore Sampling Project: A global, standardized dataset of airborne fungal DNA.


Journal

Scientific data
ISSN: 2052-4463
Titre abrégé: Sci Data
Pays: England
ID NLM: 101640192

Informations de publication

Date de publication:
30 May 2024
Historique:
received: 02 01 2024
accepted: 21 05 2024
medline: 31 5 2024
pubmed: 31 5 2024
entrez: 30 5 2024
Statut: epublish

Résumé

Novel methods for sampling and characterizing biodiversity hold great promise for re-evaluating patterns of life across the planet. The sampling of airborne spores with a cyclone sampler, and the sequencing of their DNA, have been suggested as an efficient and well-calibrated tool for surveying fungal diversity across various environments. Here we present data originating from the Global Spore Sampling Project, comprising 2,768 samples collected during two years at 47 outdoor locations across the world. Each sample represents fungal DNA extracted from 24 m

Identifiants

pubmed: 38816458
doi: 10.1038/s41597-024-03410-0
pii: 10.1038/s41597-024-03410-0
doi:

Substances chimiques

DNA, Fungal 0

Types de publication

Dataset Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

561

Subventions

Organisme : EC | EC Seventh Framework Programm | FP7 Ideas: European Research Council (FP7-IDEAS-ERC - Specific Programme: "Ideas" Implementing the Seventh Framework Programme of the European Community for Research, Technological Development and Demonstration Activities (2007 to 2013))
ID : 856506
Organisme : Academy of Finland (Suomen Akatemia)
ID : 336212, 345110

Informations de copyright

© 2024. The Author(s).

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Auteurs

Otso Ovaskainen (O)

Department of Biological and Environmental Science, University of Jyväskylä, P.O. Box 35, FI-40014, Jyväskylä, Finland. otso.t.ovaskainen@jyu.fi.
Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, P. O. Box 65, 00014, Helsinki, Finland. otso.t.ovaskainen@jyu.fi.
Department of Biology, Centre for Biodiversity Dynamics, Norwegian University of Science and Technology, Trondheim, N-7491, Norway. otso.t.ovaskainen@jyu.fi.

Nerea Abrego (N)

Department of Biological and Environmental Science, University of Jyväskylä, P.O. Box 35, FI-40014, Jyväskylä, Finland.
Department of Agricultural Sciences, University of Helsinki, P.O. Box 27, FI-00014, Helsinki, Finland.

Brendan Furneaux (B)

Department of Biological and Environmental Science, University of Jyväskylä, P.O. Box 35, FI-40014, Jyväskylä, Finland.

Bess Hardwick (B)

Department of Agricultural Sciences, University of Helsinki, P.O. Box 27, FI-00014, Helsinki, Finland.

Panu Somervuo (P)

Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, P. O. Box 65, 00014, Helsinki, Finland.

Isabella Palorinne (I)

Department of Agricultural Sciences, University of Helsinki, P.O. Box 27, FI-00014, Helsinki, Finland.

Nigel R Andrew (NR)

Natural History Museum, Zoology, University of New England, Armidale, NSW, 2351, Australia.
Faculty of Science and Engineering, Southern Cross University, Northern Rivers, NSW, 2480, Australia.

Ulyana V Babiy (UV)

Wrangel Island State Nature Reserve, Pevek, Russia.

Tan Bao (T)

Department of Biological Sciences, MacEwan University, 10, 700 - 104 Avenue, Edmonton, AB, T5J 2P2, Canada.

Gisela Bazzano (G)

Universidad Nacional de Còrdoba, Facultad de Ciencias Exactas Físicas y Naturales, Centro de Zoología Aplicada, Córdoba, Argentina.

Svetlana N Bondarchuk (SN)

Sikhote-Alin State Nature Biosphere Reserve named after K. G. Abramov, 44 Partizanskaya Str., Terney, Primorsky krai, 692150, Russia.

Timothy C Bonebrake (TC)

School of Biological Sciences, The University of Hong Kong, Hong Kong SAR, China.

Georgina L Brennan (GL)

CSIC, Institute of Marine Sciences, Passeig Marítim de la Barceloneta, 37-49ES08003, Barcelona, Spain.

Syndonia Bret-Harte (S)

Institute of Arctic Biology, University of Alaska, Fairbanks, AK, USA.

Claus Bässler (C)

Goethe-University Frankfurt, Faculty of Biological Sciences, Institute for Ecology, Evolution and Diversity, Conservation Biology, D- 60438, Frankfurt am Main, Germany.
Bavarian Forest National Park, Freyunger Str. 2, D-94481, Grafenau, Germany.
Ecology of Fungi, Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, Universitätsstraße 30, 95440, Bayreuth, Germany.

Luciano Cagnolo (L)

Consejo de Investigaciones Científicas y Técnicas (CONICET), Instituto Multidisciplinario de Biología Vegetal, Córdoba, Argentina.

Erin K Cameron (EK)

Department of Environmental Science, Saint Mary's University, 923 Robie St., Halifax, NS, B3H 3C3, Canada.

Elodie Chapurlat (E)

Department of Ecology, Swedish University of Agricultural Sciences (SLU), Uppsala, Sweden.

Simon Creer (S)

Molecular Ecology and Evolution at Bangor (MEEB), School of Environmental and Natural Sciences, Bangor University, Environment Centre Wales, Deiniol Road, Bangor, Gwynedd, Wales, LL57 2UW, UK.

Luigi P D'Acqui (LP)

Research Institute on Terrestrial Ecosystems - IRET, National Research Council - CNR, Via Madonna del Piano n° 10, 50019, Sesto Fiorentino, Firenze, Italy.
National Biodiversity Future Center, Palermo, Italy.

Natasha de Vere (N)

Natural History Museum of Denmark, University of Copenhagen, Gothersgade 130, 1123, København K, Denmark.

Marie-Laure Desprez-Loustau (ML)

INRAE, BIOGECO, F-33610, Cestas, France.
University of Bordeaux, BIOGECO, F-33615, Bordeaux, France.

Michel A K Dongmo (MAK)

School of Biological Sciences, The University of Hong Kong, Hong Kong SAR, China.
International Institute of Tropical Agriculture (IITA), P.O. Box 2008 (Messa), Yaoundé, Cameroon.

Ida B Dyrholm Jacobsen (IB)

Greenland Institute of Natural Resources, Kivioq 2, P.O. Box 570, 3900, Nuuk, Greenland.

Brian L Fisher (BL)

Entomology, 55 Music Concourse Drive, California Academy of Sciences, San Francisco, CA, 94118, USA.
Madagascar Biodiversity Center, Parc Botanique et Zoologique de Tsimbazaza, Antananarivo, 101, Madagascar.

Miguel Flores de Jesus (M)

Legado das Águas, Reserva Votorantin, TPR 188 Km 22, Tapiraí, SP, 18180-000, Brazil.

Gregory S Gilbert (GS)

Environmental Studies Department, University of California, Santa Cruz, 1156 High St., Santa Cruz, CA, 95065, USA.

Gareth W Griffith (GW)

Department of Life Sciences, Aberystwyth University, Aberystwyth, Ceredigion, WALES SY23 3DD, UK.

Anna A Gritsuk (AA)

Sikhote-Alin State Nature Biosphere Reserve named after K. G. Abramov, 44 Partizanskaya Str., Terney, Primorsky krai, 692150, Russia.

Andrin Gross (A)

Research Unit Biodiversity and Conservation Biology, SwissFungi, Swiss Federal Research Institute WSL, Zürcherstrasse 111, CH-8903, Birmensdorf, Switzerland.

Håkan Grudd (H)

Swedish Polar Research Secretariat, Abisko Scientific Research Station, Vetenskapens väg 38, SE-981 07, Abisko, Sweden.

Panu Halme (P)

Department of Biological and Environmental Science, University of Jyväskylä, P.O. Box 35, FI-40014, Jyväskylä, Finland.

Rachid Hanna (R)

Center for Tropical Research, Congo Basin Institute, University of California, Los Angeles (UCLA), Los Angeles, CA, 90095, USA.

Jannik Hansen (J)

Department of Ecoscience, Aarhus University, Dk-4000, Roskilde, Denmark.

Lars Holst Hansen (LH)

Department of Ecoscience, Aarhus University, Dk-4000, Roskilde, Denmark.

Apollon D M T Hegbe (ADMT)

Research Unit in Tropical Mycology and Plant-Soil Fungi Interactions, Faculty of Agronomy, University of Parakou, BP 123, Parakou, Republic of Benin.

Sarah Hill (S)

Natural History Museum, Zoology, University of New England, Armidale, NSW, 2351, Australia.

Ian D Hogg (ID)

Canadian High Arctic Research Station, Polar Knowledge Canada, PO Box 2150, 1 Uvajuq Road, Cambridge Bay, Nunavut, X0B 0C0, Canada.
Department of Integrative Biology, College of Biological Science, University of Guelph, 50 Stone Road East, Guelph, Ontario, N1G 2W1, Canada.
School of Science, University of Waikato, Private Bag 3105, Hamilton, 3240, New Zealand.

Jenni Hultman (J)

Department of Microbiology, University of Helsinki, Viikinkaari 9, FI-00014, Helsinki, Finland.
Natural Resources Institute Finland, Latokartanonkaari 9, 00790, Helsinki, Finland.

Kevin D Hyde (KD)

Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand.

Nicole A Hynson (NA)

Pacific Biosciences Research Center, University of Hawaii at Manoa, Honolulu, HI, USA.

Natalia Ivanova (N)

Centre for Biodiversity Genomics, University of Guelph, Guelph, ON, N1G 2W1, Canada.
Nature Metrics North America Ltd., 590 Hanlon Creek Boulevard, Unit 11, Guelph, ON, N1C 0A1, Canada.

Petteri Karisto (P)

Plant Pathology Group, Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland.
Plant Health, Natural Resources Institute Finland (Luke), Jokioinen, Finland.

Deirdre Kerdraon (D)

Department of Ecology, Swedish University of Agricultural Sciences (SLU), Uppsala, Sweden.

Anastasia Knorre (A)

Science Department, National Park Krasnoyarsk Stolby, 26a Kariernaya str., 660006, Krasnoyarsk, Russia.
Institute of Ecology and Geography, Siberian Federal University, 79 Svobodny pr., 660041, Krasnoyarsk, Russia.

Irmgard Krisai-Greilhuber (I)

Department of Botany and Biodiversity Research, University of Vienna, Rennweg 14, 1030, Wien, Austria.

Juri Kurhinen (J)

Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, P. O. Box 65, 00014, Helsinki, Finland.

Masha Kuzmina (M)

Centre for Biodiversity Genomics, University of Guelph, Guelph, ON, N1G 2W1, Canada.

Nicolas Lecomte (N)

Centre d'études nordiques and Canada Research Chair in Polar and Boreal Ecology, Department of Biology, Pavillon Rémi-Rossignol, 18, Antonine-Maillet, Université de Moncton, Moncton, NB, E1A 3E9, Canada.

Erin Lecomte (E)

Centre d'études nordiques and Canada Research Chair in Polar and Boreal Ecology, Department of Biology, Pavillon Rémi-Rossignol, 18, Antonine-Maillet, Université de Moncton, Moncton, NB, E1A 3E9, Canada.

Viviana Loaiza (V)

Department of Evolutionary Biology and Environmental Sciences, University of Zürich, Zürich, Switzerland.

Erik Lundin (E)

Swedish Polar Research Secretariat, Abisko Scientific Research Station, Vetenskapens väg 38, SE-981 07, Abisko, Sweden.

Alexander Meire (A)

Swedish Polar Research Secretariat, Abisko Scientific Research Station, Vetenskapens väg 38, SE-981 07, Abisko, Sweden.

Armin Mešić (A)

Laboratory for Biological Diversity, Rudjer Boskovic Institute, Bijenicka cesta 54, HR-10000, Zagreb, Croatia.

Otto Miettinen (O)

Finnish Museum of Natural History, University of Helsinki, P.O. Box 7, 00014, Helsinki, Finland.

Norman Monkhause (N)

Centre for Biodiversity Genomics, University of Guelph, Guelph, ON, N1G 2W1, Canada.

Peter Mortimer (P)

Centre for Mountain Futures, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China.

Jörg Müller (J)

Field Station Fabrikschleichach, Department of Animal Ecology and Tropical Biology (Zoology III), Julius Maximilians University Würzburg, Rauhenebrach, Germany.
Bavarian Forest National Park, Grafenau, Germany.

R Henrik Nilsson (RH)

Department of Biological and Environmental Sciences, Gothenburg Global Biodiversity Centre, University of Gothenburg, Box 461, 405 30, Göteborg, Sweden.

Puani Yannick C Nonti (PYC)

Research Unit in Tropical Mycology and Plant-Soil Fungi Interactions, Faculty of Agronomy, University of Parakou, BP 123, Parakou, Republic of Benin.

Jenni Nordén (J)

Norwegian Institute for Nature Research (NINA), Sognsveien 68, N-0855, Oslo, Norway.

Björn Nordén (B)

Norwegian Institute for Nature Research (NINA), Sognsveien 68, N-0855, Oslo, Norway.

Claudia Paz (C)

Department of Biodiversity, Institute of Biosciences, São Paulo State University, Av 24A 1515, Rio Claro, SP, 13506-900, Brazil.
Department of Entomology and Acarology, Laboratory of Pathology and Microbial Control, University of São Paulo, CEP 13418-900, Piracicaba, SP, Brazil.

Petri Pellikka (P)

Department of Geosciences and Geography, Faculty of Science, University of Helsinki, P.O. Box 64, 00014, Helsinki, Finland.
State Key Laboratory for Information Engineering in Surveying, Mapping and Remote Sensing, Wuhan University, Wuhan, 430079, China.
Wangari Maathai Institute for Environmental and Peace Studies, University of Nairobi, P.O. Box 29053, 00625, Kangemi, Kenya.

Danilo Pereira (D)

Plant Pathology Group, Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland.
Max Planck Institute for Evolutionary Biology, August-Thienemann-Str. 2, 24306, Plön, Germany.

Geoff Petch (G)

School of Science and the Environment, University of Worcester, Henwick Grove, Worcester, WR2 6AJ, UK.

Juha-Matti Pitkänen (JM)

Natural Resources Institute Finland, Latokartanonkaari 9, 00790, Helsinki, Finland.

Flavius Popa (F)

Department of Ecosystem Monitoring, Research & Conservation, Black Forest National Park, Kniebisstraße 67, 77740, Bad Peterstal-Griesbach, Germany.

Caitlin Potter (C)

Department of Life Sciences, Aberystwyth University, Aberystwyth, Ceredigion, WALES SY23 3DD, UK.

Jenna Purhonen (J)

Department of Biological and Environmental Science, University of Jyväskylä, P.O. Box 35, FI-40014, Jyväskylä, Finland.
School of Resource Wisdom, University of Jyväskylä, P.O. Box 35, FIN-40014, Jyväskylä, Finland.

Sanna Pätsi (S)

The Biodiversity Unit of the University of Turku, Henrikinkatu 2, 20500, Turku, Finland.

Abdullah Rafiq (A)

Molecular Ecology and Evolution at Bangor (MEEB), School of Environmental and Natural Sciences, Bangor University, Environment Centre Wales, Deiniol Road, Bangor, Gwynedd, Wales, LL57 2UW, UK.

Dimby Raharinjanahary (D)

Madagascar Biodiversity Center, Parc Botanique et Zoologique de Tsimbazaza, Antananarivo, 101, Madagascar.

Niklas Rakos (N)

Swedish Polar Research Secretariat, Abisko Scientific Research Station, Vetenskapens väg 38, SE-981 07, Abisko, Sweden.

Achala R Rathnayaka (AR)

Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand.
School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand.

Katrine Raundrup (K)

Greenland Institute of Natural Resources, Kivioq 2, P.O. Box 570, 3900, Nuuk, Greenland.

Yury A Rebriev (YA)

Southern Scientific Center of the Russian Academy of Sciences, 41 Chekhov ave., Rostov-on-Don, 344006, Russia.

Jouko Rikkinen (J)

Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, P. O. Box 65, 00014, Helsinki, Finland.
Finnish Museum of Natural History, University of Helsinki, P.O. Box 7, 00014, Helsinki, Finland.

Hanna M K Rogers (HMK)

Department of Ecology, Swedish University of Agricultural Sciences (SLU), Uppsala, Sweden.

Andrey Rogovsky (A)

Science Department, National Park Krasnoyarsk Stolby, 26a Kariernaya str., 660006, Krasnoyarsk, Russia.

Yuri Rozhkov (Y)

State Nature Reserve Olekminsky, Olekminsk, Russian Federation, Russia.

Kadri Runnel (K)

Mycology and Microbiology Center, University of Tartu, Tartu, Estonia.
Institute of Ecology and Earth Sciences, University of Tartu, Liivi 2, 50409, Tartu, Estonia.

Annika Saarto (A)

The Biodiversity Unit of the University of Turku, Henrikinkatu 2, 20500, Turku, Finland.

Anton Savchenko (A)

Institute of Ecology and Earth Sciences, University of Tartu, Liivi 2, 50409, Tartu, Estonia.

Markus Schlegel (M)

Research Unit Biodiversity and Conservation Biology, SwissFungi, Swiss Federal Research Institute WSL, Zürcherstrasse 111, CH-8903, Birmensdorf, Switzerland.

Niels Martin Schmidt (NM)

Department of Ecoscience, Aarhus University, Dk-4000, Roskilde, Denmark.
Arctic Research Center, Aarhus University, Dk-4000, Roskilde, Denmark.

Sebastian Seibold (S)

TUD Dresden University of Technology, Forest Zoology, Pienner Str. 7, 01737, Tharandt, Germany.
Technical University of Munich, Terrestrial Ecology Research Group, Department of Life Science Systems, School of Life Sciences, Hans-Carl-von-Carlowitz-Platz 2, 85354, Freising, Germany.

Carsten Skjøth (C)

School of Science and the Environment, University of Worcester, Henwick Grove, Worcester, WR2 6AJ, UK.
Department of Environmental Science, Aarhus University, Frederiksborgvej 399, DK-4000, Roskilde, Denmark.

Elisa Stengel (E)

Field Station Fabrikschleichach, Department of Animal Ecology and Tropical Biology (Zoology III), Julius Maximilians University Würzburg, Rauhenebrach, Germany.

Svetlana V Sutyrina (SV)

Sikhote-Alin State Nature Biosphere Reserve named after K. G. Abramov, 44 Partizanskaya Str., Terney, Primorsky krai, 692150, Russia.

Ilkka Syvänperä (I)

The Biodiversity Unit of the University of Turku, Kevontie 470, 99980, Utsjoki, Finland.

Leho Tedersoo (L)

Mycology and Microbiology Center, University of Tartu, Tartu, Estonia.
College of Science, King Saud University, Riyadh, Saudi Arabia.

Jebidiah Timm (J)

Institute of Arctic Biology, University of Alaska, Fairbanks, AK, USA.

Laura Tipton (L)

School of Natural Science and Mathematics, Chaminade University of Honolulu, Honolulu, HI, USA.

Hirokazu Toju (H)

Laboratory of Ecosystems and Coevolution, Graduate School of Biostudies, Kyoto University, Kyoto, 606-8501, Japan.
Center for Living Systems Information Science (CeLiSIS), Graduate School of Biostudies, Kyoto University, Kyoto, 606-8501, Japan.

Maria Uscka-Perzanowska (M)

Department of Ecology, Swedish University of Agricultural Sciences (SLU), Uppsala, Sweden.

Michelle van der Bank (M)

African Centre for DNA Barcoding (ACDB), University of Johannesburg, PO BOX 524, Auckland Park, 2006, South Africa.

F Herman van der Bank (F)

African Centre for DNA Barcoding (ACDB), University of Johannesburg, PO BOX 524, Auckland Park, 2006, South Africa.

Bryan Vandenbrink (B)

Canadian High Arctic Research Station, Polar Knowledge Canada, PO Box 2150, 1 Uvajuq Road, Cambridge Bay, Nunavut, X0B 0C0, Canada.

Stefano Ventura (S)

Research Institute on Terrestrial Ecosystems - IRET, National Research Council - CNR, Via Madonna del Piano n° 10, 50019, Sesto Fiorentino, Firenze, Italy.
National Biodiversity Future Center, Palermo, Italy.

Solvi R Vignisson (SR)

Sudurnes Science and Learning Center, Garðvegi 1, 245, Sandgerði, Iceland.

Xiaoyang Wang (X)

State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.

Wolfgang W Weisser (WW)

Technical University of Munich, Terrestrial Ecology Research Group, Department of Life Science Systems, School of Life Sciences, Hans-Carl-von-Carlowitz-Platz 2, 85354, Freising, Germany.

Subodini N Wijesinghe (SN)

Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand.
School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand.

S Joseph Wright (S)

Smithsonian Tropical Research Institute, Apartado, 0843-03092, Balboa, Panama.

Chunyan Yang (C)

State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.

Nourou S Yorou (NS)

Research Unit in Tropical Mycology and Plant-Soil Fungi Interactions, Faculty of Agronomy, University of Parakou, BP 123, Parakou, Republic of Benin.

Amanda Young (A)

Institute of Arctic Biology, University of Alaska, Fairbanks, AK, USA.

Douglas W Yu (DW)

State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.
School of Biological Sciences, University of East Anglia, Norwich, Norfolk, NR4 7TJ, UK.
Yunnan Key Laboratory of Biodiversity and Ecological Security of Gaoligong Mountain, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.

Evgeny V Zakharov (EV)

Centre for Biodiversity Genomics, University of Guelph, Guelph, ON, N1G 2W1, Canada.

Paul D N Hebert (PDN)

Canadian High Arctic Research Station, Polar Knowledge Canada, PO Box 2150, 1 Uvajuq Road, Cambridge Bay, Nunavut, X0B 0C0, Canada.
Centre for Biodiversity Genomics, University of Guelph, Guelph, ON, N1G 2W1, Canada.

Tomas Roslin (T)

Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, P. O. Box 65, 00014, Helsinki, Finland.
Department of Ecology, Swedish University of Agricultural Sciences (SLU), Uppsala, Sweden.

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