The application of varying amount of green manure combined with nitrogen fertilizer altered the soil bacterial community and rice yield in karst paddy areas.
Bacterial community
Co-occurrence network
Green manure
Karst
Rice yield
Journal
BMC plant biology
ISSN: 1471-2229
Titre abrégé: BMC Plant Biol
Pays: England
ID NLM: 100967807
Informations de publication
Date de publication:
08 Jul 2024
08 Jul 2024
Historique:
received:
20
12
2023
accepted:
27
06
2024
medline:
9
7
2024
pubmed:
9
7
2024
entrez:
8
7
2024
Statut:
epublish
Résumé
Long-term application of green manure (GM) and nitrogen (N) fertilizers markedly improved soil fertility and boosted rice yield in ecologically fragile karst paddy fields. However, the precise response mechanisms of the soil bacterial community to varying amounts of green manure alone and in combination with N fertilizer in such environments remain poorly elucidated. In this study, we investigated the soil bacterial communities, keystone taxa, and their relationship with soil environmental variables across eight fertilization treatments. These treatments included group without N addition (N
Identifiants
pubmed: 38977970
doi: 10.1186/s12870-024-05351-7
pii: 10.1186/s12870-024-05351-7
doi:
Substances chimiques
Fertilizers
0
Manure
0
Nitrogen
N762921K75
Soil
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
646Subventions
Organisme : Natural Science Foundation of Guangxi under Grant
ID : No. 2023GXNSFAA026484
Organisme : Natural Science Foundation of Guangxi under Grant
ID : No. 2023GXNSFAA026484
Organisme : Natural Science Foundation of Guangxi under Grant
ID : No. 2023GXNSFAA026484
Organisme : Natural Science Foundation of Guangxi under Grant
ID : No. 2023GXNSFAA026484
Organisme : Natural Science Foundation of Guangxi under Grant
ID : No. 2023GXNSFAA026484
Organisme : Natural Science Foundation of Guangxi under Grant
ID : No. 2023GXNSFAA026484
Organisme : Guangxi Key R&D Program Project under Grant
ID : No. GuiKe AB22080068
Organisme : Guangxi Key R&D Program Project under Grant
ID : No. GuiKe AB22080068
Organisme : Guangxi Key R&D Program Project under Grant
ID : No. GuiKe AB22080068
Organisme : Guangxi Key R&D Program Project under Grant
ID : No. GuiKe AB22080068
Organisme : Guangxi Key R&D Program Project under Grant
ID : No. GuiKe AB22080068
Organisme : Guangxi Key R&D Program Project under Grant
ID : No. GuiKe AB22080068
Organisme : China Agriculture Research System- Green manure under Grant
ID : No. CARS-22
Organisme : China Agriculture Research System- Green manure under Grant
ID : No. CARS-22
Organisme : China Agriculture Research System- Green manure under Grant
ID : No. CARS-22
Organisme : China Agriculture Research System- Green manure under Grant
ID : No. CARS-22
Organisme : China Agriculture Research System- Green manure under Grant
ID : No. CARS-22
Organisme : China Agriculture Research System- Green manure under Grant
ID : No. CARS-22
Organisme : Guangxi Agricultural Science and Technology Innovation Alliance under Grant
ID : No. 202313
Organisme : Guangxi Agricultural Science and Technology Innovation Alliance under Grant
ID : No. 202313
Organisme : Guangxi Agricultural Science and Technology Innovation Alliance under Grant
ID : No. 202313
Organisme : Guangxi Agricultural Science and Technology Innovation Alliance under Grant
ID : No. 202313
Organisme : Guangxi Agricultural Science and Technology Innovation Alliance under Grant
ID : No. 202313
Organisme : Guangxi Agricultural Science and Technology Innovation Alliance under Grant
ID : No. 202313
Organisme : Research and Development Fund of Guangxi Academy of Agricultural Sciences under Grant
ID : No. 2021YT037 and No. 2022ZX08
Organisme : Research and Development Fund of Guangxi Academy of Agricultural Sciences under Grant
ID : No. 2021YT037 and No. 2022ZX08
Organisme : Research and Development Fund of Guangxi Academy of Agricultural Sciences under Grant
ID : No. 2021YT037 and No. 2022ZX08
Organisme : Research and Development Fund of Guangxi Academy of Agricultural Sciences under Grant
ID : No. 2021YT037 and No. 2022ZX08
Organisme : Research and Development Fund of Guangxi Academy of Agricultural Sciences under Grant
ID : No. 2021YT037 and No. 2022ZX08
Organisme : Research and Development Fund of Guangxi Academy of Agricultural Sciences under Grant
ID : No. 2021YT037 and No. 2022ZX08
Informations de copyright
© 2024. The Author(s).
Références
Bashir M, Ali S, Ghauri M, Adris A, Harun R. Impact of excessive nitrogen fertilizers on the environment and associated mitigation strategies. Asian J Microbiol Biotechnol Environ Sci. 2013;15:213–21.
Fan QY, Xu CX, Zhang L, Xie JC, Zhou GP, Liu J, Hu F, Gao SJ, Cao WD. Application of milk vetch (Astragalus sinicus L.) with reduced chemical fertilizer improves rice yield and nitrogen, phosphorus, and potassium use efficiency in southern China. Eur J Agron. 2023;144:126762. https://doi.org/10.1016/j.eja.2023.126762 .
doi: 10.1016/j.eja.2023.126762
Gao SJ, Zhou GP, Cao WD. Effects of milk vetch (Astragalus sinicus) as winter green manure on rice yield and rate of fertilizer application in rice paddies in south China. Plant Nutr Fer Sci. 2020;26(12):2115–26. https://doi.org/10.11674/zwyf.20375 .
doi: 10.11674/zwyf.20375
Liang H, Li S, Zhang L, Xu CX, Lv YH, Gao SJ, Cao WD. Long-term green manuring enhances crop N uptake and reduces N losses in rice production system. Soil till Res. 2022;220:105369. https://doi.org/10.1016/j.still.2022.105369 .
doi: 10.1016/j.still.2022.105369
Xie Z, He Y, Tu S, Xu C, Liu G, Wang H, Cao W, Liu H. Chinese milk vetch improves plant growth, development and
doi: 10.1038/s41598-017-03919-y
pubmed: 28620216
pmcid: 5472609
Liu JH, Yang RX, Wu GC, Xie Y, Lou LJ, Shen YX, Sun ZG. Analysis of field increasing effect of winter green manure on rice fields in south China. Chin J Grassl. 2024;46(02):111–20. https://doi.org/10.16742/j.zgcdxb.20230037 .
doi: 10.16742/j.zgcdxb.20230037
Yu ZY, Fang CY, Liu FX, Zhang JL, Gao YJ, Lu YH, et al. Effects of green manure with nitrogen fertilizer on the yield and nutrient absorption of double-cropping rice. J Soil Water Conserv. 2023;37(05):320–7. https://doi.org/10.13870/j.cnki.stbcxb.2023.05.039 .
doi: 10.13870/j.cnki.stbcxb.2023.05.039
Zhu Q, Zhang J, Guo ZH, Geng JM. Effects of different nitrogen inputs on rice yield and soil nitrogen forms under incorporation of rice straw and Chinese milk vetch. Plant Nutr Fer Sci. 2020;26(12):2177–83. https://doi.org/10.11674/zwyf.20384 .
doi: 10.11674/zwyf.20384
Li ZQ, Wang JH, Zhang X. A review on the research of decomposition and nutrients release of green manure. Soil Fer Sci Chin. 2017;048–16. https://doi.org/10.11838/sfsc.20170402 .
Ye G, Lin Y, Liu D, Chen Z, Luo J, Bolan N, Fan J, Ding W. Long-term application of manure over plant residues mitigates acidification, builds soil organic carbon and shifts prokaryotic diversity in acidic Ultisols. Appl Soil Ecol. 2019;133:24–33. https://doi.org/10.1016/j.apsoil.2018.09.008 .
doi: 10.1016/j.apsoil.2018.09.008
Zhang X, Gao J, Cao Y, Ma X, He J. Long-term Rice and green manure rotation alters the endophytic bacterial communities of the Rice root. Microb Ecol. 2013;66:917–26. https://doi.org/10.1007/s00248-013-0293-1 .
doi: 10.1007/s00248-013-0293-1
pubmed: 24046075
Gao SJ, Zhou GP, Chang DN, Liang H, Nie J, Liao YL, Lu YH, Xu CX, Liu J, Wu J, et al. Southern China can produce more high-quality rice with less N by green manuring. Resour Conserva Recy. 2023;196:107025. https://doi.org/10.1016/j.resconrec.2023.107025 .
doi: 10.1016/j.resconrec.2023.107025
Zou C, Wang Y, Yang J, Tang B, Liu Y, Zhang X. Effects of combined application of chemical fertilizer and Chinese milk vetch (Astragalus sinicus) on the microorganism and nutrients of paddy soil. Soil Fert Sci. China. 2013;6:28–31. https://doi.org/10.11838/sfsc.20130606 .
Zhang X, Zhang R, Gao J, Wang X, Fan F, Ma X, Yin H, Zhang C, Feng K, Deng Y. Thirty-one years of rice-rice-green manure rotations shape the rhizosphere microbial community and enrich beneficial bacteria. Soil Biol Biochem. 2017;104:208–17. https://doi.org/10.1016/j.soilbio.2016.10.023 .
doi: 10.1016/j.soilbio.2016.10.023
Zhong J, Tang H, Li Z, Dong W, Wei C, Li Q, He T. Effects of combining green manure with chemical fertilizer on the bacterial community structure in karst paddy soil. Plant Nutr Fer Sci. 2021;27(10):1746–56. https://doi.org/10.11674/zwyf.2021246 .
Pu J, Li Z, Zhong J, Jin Z, Tang H, Wei C, et al. Effect of the combination of green manure with nitrogen fertilizer on microbial community in karst paddy soil. Acta Microbiol Sin. 2022;62(6):2417–32. https://doi.org/10.13343/j.cnki.wsxb.20220079 .
Pu J, Li Z, Tang H, Zhou G, Wei C, Dong W, Jin Z, He T. Response of soil microbial communities and rice yield to nitrogen reduction with green manure application in karst paddy areas. Front Microbiol. 2023;13:1070876. https://doi.org/10.3389/fmicb.2022.1070876 .
doi: 10.3389/fmicb.2022.1070876
pubmed: 36699610
pmcid: 9869043
Zhou G, Gao S, Lu Y, Liao Y, Nie J, Cao W. Co-incorporation of green manure and rice straw improves rice production, soil chemical, biochemical and microbiological properties in a typical paddy field in southern China. Soil till Res. 2020;197:104499. https://doi.org/10.1016/j.still.2019.104499 .
doi: 10.1016/j.still.2019.104499
Dai Z, Su W, Chen H, Barberán A, Zhao H, Yu M, Yu L, Brookes PC, Schadtb CW, Chang SX, et al. Long-term nitrogen fertilization decreases bacterial diversity and favors the growth of Actinobacteria and Proteobacteria in agro-ecosystems across the globe. Glob Chang Biol. 2018;24(8):3452–61. https://doi.org/10.1111/gcb.14163 .
doi: 10.1111/gcb.14163
pubmed: 29645398
Gao S, Cao W, Zhou G, Rees RM. Bacterial communities in paddy soils changed by milk vetch as green manure: a study conducted across six provinces in South China. Pedosphere. 2021;31:521–30. https://doi.org/10.1016/s1002-0160(21)60002-4 .
doi: 10.1016/s1002-0160(21)60002-4
Bian Q, Wang X, Bao X, Zhu L, Xie Z, Che Z, Sun B. Exogenous substrate quality determines the dominant keystone taxa linked to carbon mineralization: evidence from a 30-year experiment. Soil Biol Biochem. 2022;169:108683. https://doi.org/10.1016/j.soilbio.2022.108683 .
doi: 10.1016/j.soilbio.2022.108683
Banerjee S, Schlaeppi K, Van der Heijden MGA. Keystone taxa as drivers of microbiome structure and functioning. Nat Rev Microbiol. 2018;16:567–76. https://doi.org/10.1038/s41579-018-0024-1 .
doi: 10.1038/s41579-018-0024-1
pubmed: 29789680
Banerjee S, Walder F, Büchi L, Meyer M, Held A, Gattinger A, Keller T, Charles R, Van der Heijden MGA. Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots. ISME J. 2019;13:1722–36. https://doi.org/10.1038/s41396-019-0383-2 .
doi: 10.1038/s41396-019-0383-2
pubmed: 30850707
pmcid: 6591126
Li X, Sorensen P, Li F, Petersen SO, Olesen JE. Quantifying biological nitrogen fixation of different catch crops, and residual effects of roots and tops on nitrogen uptake in barley using in-situ N-15 labelling. Plant Soil. 2015;395:273–87. https://doi.org/10.1007/s11104-015-2548-8 .
doi: 10.1007/s11104-015-2548-8
Sun R, Wang F, Hu C, Liu B. Metagenomics reveals taxon-specific responses of the nitrogen-cycling microbial community to long-term nitrogen fertilization. Soil Biol Biochem. 2021;156:108214. https://doi.org/10.1016/j.soilbio.2021.108214 .
doi: 10.1016/j.soilbio.2021.108214
Fan F, Yu B, Wang BR, George TS, Yin HQ, Xu DY, Li DC, Song AL. Microbial mechanisms of the contrast residue decomposition and priming effect in soils with different organic and chemical fertilization histories. Soil Biol Biochem. 2019;135:213–21. https://doi.org/10.1016/j.soilbio.2019.05.001 .
doi: 10.1016/j.soilbio.2019.05.001
Yuan D. On the karst ecosystem. Acta Geol Sin Eng Edn. 2001;75:336–8.
doi: 10.1111/j.1755-6724.2001.tb00541.x
Li Y, Liu XM, Yin ZY, Chen H, Cai XL, Xie YH, et al. Changes in soil microbial communities from exposed rocks to arboreal rhizosphere during vegetation succession in a karst mountainous ecosystem. J Plant Interact. 2021;16(1):550–63. https://doi.org/10.1080/17429145.2021.2002955 .
doi: 10.1080/17429145.2021.2002955
Liu CQ, Lang YC, Li SL, Pu HC, Tu CL, Liu TZ, et al. Researches on biogeochemical processes and nutrient cycling in Karstic ecological systems, southwest China: a review. Earth Sci Front. 2009;16(6):1–12.
Chen XL, Wang JF, Kong X, Wang L, Zhang P, Gong JY, et al. Advances in structure and function of microbial communities in karst areas of China. J Microbio. 2023;43(02):106–14. https://doi.org/10.3969/j.issn.1005-7021.2023.02.012 .
Wan WJ, Tan JD, Wang Y, Qin Y, He HM, Wu HQ, Zuo WL, He DL. Responses of the rhizosphere bacterial community in acidic crop soil to pH: changes in diversity, composition, interaction, and function. Sci Total Environ. 2020;700:134418. https://doi.org/10.1016/j.scitotenv.2019.134418 .
doi: 10.1016/j.scitotenv.2019.134418
pubmed: 31629269
Gao S, Zhang R, Cao W, Fan Y, Gao J, Huang J, Bai J, Zeng N, Chang D, Katsu-Yoshi S. Long-term rice-rice-green manure rotation changing the microbial communities in typical red paddy soil in south China. J Integr Agr. 2015;14(12):2512–20. https://doi.org/10.1016/S2095-3119(15)61230-8 .
doi: 10.1016/S2095-3119(15)61230-8
Lu R. Analytical method for soil and agro-chemical (in Chinese). Beijing, China: Agricultural Science and Technology; 2000.
Tamaki H, Wright C, Li X, Lin Q, Hwang C, Wang S, Thimmapuram J, Kamagata Y, Liu W. Analysis of 16S rRNA amplicon sequencing options on the Roche/454 next-generation titanium sequencing platform. PLoS ONE. 2011;6:e25263. https://doi.org/10.1371/journal.pone.0025263 .
doi: 10.1371/journal.pone.0025263
pubmed: 21966473
pmcid: 3179495
Cock PJA, Fields CJ, Goto N, Heuer ML, Rice PM. The sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Res. 2010;38:1767–71. https://doi.org/10.1093/nar/gkp1137 .
doi: 10.1093/nar/gkp1137
pubmed: 20015970
Delgado-Baquerizo M, Maestre FT, Reich PB, Jeffries T, Gaitan J, Encinar D, Berdugo M, Campbell C, Singh B. Microbial diversity drives multifunctionality in terrestrial ecosystems. Nat Commun. 2016;7:10541. https://doi.org/10.1038/ncomms10541 .
doi: 10.1038/ncomms10541
pubmed: 26817514
pmcid: 4738359
Gustafsson J, Martenson R. Structural equation modeling with AMOS: basic concepts, applications, and programming. Contemp Psychology-APA Rev Books. 2002;47:478–80.
doi: 10.1037/001198
Benjamini Y, Hochberg Y, Stat Soc B. 1995; 57: 289–300. https://doi.org/10.1111/j.2517-6161.1995.tb02031.x .
Bastian M, Heymann S, Jacomy M. Gephi: an open source software for exploring and manipulating networks. 2009.
Newman ME. Modularity and community structure in networks. Proc Natl Acad Sci USA. 2006;103(23):8577–82. https://doi.org/10.1073/pnas.0601602103 .
doi: 10.1073/pnas.0601602103
pubmed: 16723398
pmcid: 1482622
Berry D, Widder S. Deciphering microbial interactions and detecting keystone species with co-occurrence networks. Front Microbio. 2014;5:1–14. https://doi.org/10.3389/fmicb.2014.00219 .
doi: 10.3389/fmicb.2014.00219
Zheng H, Yang T, Bao Y, He P, Yang K, Mei X, Zhong Wei, Xu Y, Shen Q, Banerjee S. Network analysis and subsequent culturing reveal keystone taxa involved in microbial litter decomposition dynamics. Soil Biol Biochem. 2021;157:108230. https://doi.org/10.1016/j.soilbio.2021.108230 .
doi: 10.1016/j.soilbio.2021.108230
Cui Z, Chen X, Zhang F. Current nitrogen management status and measures to improve the intensive wheat-maize system in China. Ambio. 2010;39:376–84. https://doi.org/10.1007/s13280-010-0076-6 .
doi: 10.1007/s13280-010-0076-6
pubmed: 21053721
pmcid: 3357710
Luo S, Yu L, Liu Y, Zhang Y, Yang W, Li Z, Wang J. Effects of reduced nitrogen input on productivity and N
Wang F, Chen S, Qin S, Sun R, Zhang Y, Wang S, Hu CS, Hu HW, Liu B. Long-term nitrogen fertilization alters microbial community structure and denitrifier abundance in the deep vadose zone. J Soil Sediment. 2021;21(6):2394–403. https://doi.org/10.1007/s11368-021-02931-0 .
doi: 10.1007/s11368-021-02931-0
Chen J, Qin W, Chen X, Cao W, Qian G, Liu J, Xu CX. Application of Chinese milk vetch affects rice yield and soil productivity in a subtropical double-rice cropping system. J Integr Agric. 2020;19:2116–26. https://doi.org/10.1016/s2095-3119(19)62858-3 .
doi: 10.1016/s2095-3119(19)62858-3
Zhang J, Zheng C, Zhang L, Zhang C, Lv Y, Nie L, Zhang X, Li B, Cao W, Li M, et al. Effects of Chinese milk vetch returning on soil properties, microbial community, and rice yield in paddy soil. Sustainability. 2022;14:16065. https://doi.org/10.3390/su142316065 .
doi: 10.3390/su142316065
Li Z, Zhang X, Xu J, Cao K, Wang J, Xu C, Cao W. Green manure incorporation with reductions in chemical fertilizer inputs improves rice yield and soil organic matter accumulation. J Soil Sediment. 2020;20:2784–93. https://doi.org/10.1007/s11368-020-02622-2 .
doi: 10.1007/s11368-020-02622-2
Yang L, Zhou X, Liao Y, Lu Y, Nie J, Cao W. Co-incorporation of rice straw and green manure benefits rice yield and nutrient uptake. Crop Sci. 2019;59:749–59. https://doi.org/10.2135/cropsci2018.07.0427 .
doi: 10.2135/cropsci2018.07.0427
Ranaivoson L, Falconnier GN, Affholder F, Leroux L, Autfray P, Muller B, Auzoux S, Ripoche A. Can green manure contribute to sustainable intensification of rainfed rice production in Madagascar? Field Crop Res. 2022;289:108711. https://doi.org/10.1016/j.fcr.2022.108711 .
doi: 10.1016/j.fcr.2022.108711
White WB. Thermodynamic equilibrium, kinetics, activation bar riers, and reaction mechanisms for chemical reactions in karst terrains. Environ Geol. 1997;30(1):46–58.
doi: 10.1007/s002540050131
Xia MM, Ma XL, Liu J, Wu M, Li ZP, Liu M. Potential effect of key soil bacterial taxa on the increase of rice yield under milk vetch rotation. Front Microbiol. 2023;14:1150505. https://doi.org/10.3389/fmicb.2023.1150505 .
doi: 10.3389/fmicb.2023.1150505
pubmed: 37283927
pmcid: 10241072
Solangi F, Bai J, Gao S, Yang L, Zhou G, Cao W. Improved accumulation capabilities of phosphorus and potassium in green manures and its relationship with soil properties and enzymatic activities. Agronomy. 2019;9(11):708. https://doi.org/10.3390/agronomy9110708 .
doi: 10.3390/agronomy9110708
Khan MI, Gwon HS, Alam MA, Song HJ, Das S, Kim PJ. Short term efects of diferent green manure amendments on the composition of main microbial groups and microbial activity of a submerged rice cropping system. Appl Soil Ecol. 2020;147:103400. https://doi.org/10.1016/j.apsoil.2019.103400 .
doi: 10.1016/j.apsoil.2019.103400
Song XJ, Liu XT, Liang GP, Li SP, Li JY, Zhang MN, Zheng FJ, Ding WT, Wu XP, Wu HJ. Positive priming effect explained by microbial nitrogen mining and stoichiometric decomposition at different stages. Soil Biol Biochem. 2022;175:108852. https://doi.org/10.1016/j.soilbio.2022.108852 .
doi: 10.1016/j.soilbio.2022.108852
Wang XJ, Clayton R, Butterly CR, Baldock JF, Tang CC. Long-term stabilization of crop residues and soil organic carbon affected by residue quality and initial soil pH. Sci Total Environ. 2017;587:502–9. https://doi.org/10.1016/j.scitotenv.2017.02.199 .
doi: 10.1016/j.scitotenv.2017.02.199
pubmed: 28258752
Geisseler D, Scow KM. Long-term effects of mineral fertilizers on soil microorganisms – A review. Soil Biol Biochem. 2014;75:54–63. https://doi.org/10.1016/j.soilbio.2014.03.023 .
Dong CC, Shi Y, Wang JJ, Zeng H, Wang W. Divergent responses of the soil bacteria community to multi-level nitrogen enrichment in temperate grasslands under diferent degrees of degradation. Land Degrad Dev. 2021;32(13):3524–35. https://doi.org/10.1002/ldr.3935 .
doi: 10.1002/ldr.3935
Liu WX, Jiang L, Yang S, Wang Z, Tian R, Peng ZY, Chen YL, Zhang XX, Kuang JL, Ling N, et al. Critical transition of soil bacterial diversity and composition triggered by nitrogen enrichment. Ecology. 2020;101(8):e03053. https://doi.org/10.1002/ecy.3053 .
doi: 10.1002/ecy.3053
pubmed: 32242918
Lin YX, Ye GP, Kuzyakov Y, Liu DY, Fan JD, Ding WX. Long-term manure application increases soil organic matter and aggregation, and alters microbial community structure and keystone taxa. Soil Biol Biochem. 2019;134:187–96. https://doi.org/10.1016/j.soilbio.2019.03.030 .
doi: 10.1016/j.soilbio.2019.03.030
Zhu Z, Zhou J, Shahbaz M, Tang H, Liu S, Zhang W, Yuan H, Zhou P, Alharbi H, Wu J, et al. Microorganisms maintain C:N stoichiometric balance by regulating the priming effect in long-term fertilized soils. Appl Soil Ecol. 2021;167:104033. https://doi.org/10.1016/j.apsoil.2021.104033 .
doi: 10.1016/j.apsoil.2021.104033
Fierer N, Bradford M, Jackson R. Toward an ecological classification of soil bacteria. Ecology. 2007;88:1354–64. https://doi.org/10.1890/05-1839 .
doi: 10.1890/05-1839
pubmed: 17601128
Ho A, Lonardo DPD, Bodelier PLE. Revisiting life strategy concepts in environmental microbial ecology. FEMS Microbiology Ecology. 2017; fix006. https://doi.org/10.1093/femsec/fix006 .
Zhong Y, Yan W, Shangguan Z. Impact of long-term N additions upon coupling between soil microbial community structure and activity, and nutrient-use efficiencies. Soil Biol Biochem. 2015;91:151–9. https://doi.org/10.1016/j.soilbio.2015.08.030 .
doi: 10.1016/j.soilbio.2015.08.030
Feng YZ, Delgado-Baquerizo M, Zhu YG, Han XZ, Han XR, Xin XL, Li W, Guo ZB, Dang TH, Li CH, et al. Responses of soil bacterial diversity to fertilization are driven by local environmental context across China. Engineering. 2022;12:164–70. https://doi.org/10.1016/j.eng.2021.09.012 .
doi: 10.1016/j.eng.2021.09.012
Rousk J, Brookes PC, Baath E. Investigating the mechanisms for the opposing pH relationships of fungal and bacterial growth in soil. Soil Biol Biochem 42(6): 926–34. https://doi.org/10.1016/j.soilbio.2010.02.009 .
Yan J, Zhou Q, Jiang Y, Chen J, Li Q, Li Z. Variation of cultivable bacterial community structure and the main influencing factors in karst paddy soil under different fertilization regimes. Microbiol China. 2020;47(09):2833–47. https://doi.org/10.13344/j.microbiol.china.200672 .
Fang YY, Nazaries L, Singh BK, Singh BP. Microbial mechanisms of carbon priming effects revealed during the interaction of crop residue and nutrient inputs in contrasting soils. Glob Chang Biol. 2018;24:2775–90. https://doi.org/10.1111/gcb.14154 .
doi: 10.1111/gcb.14154
pubmed: 29603502
Karhu K, Alaei S, Li J, Merila P, Ostonen I, Bengtson P. Microbial carbon use efficiency and priming of soil organic matter mineralization by glucose additions in boreal forest soils with different C:N ratios. Soil Biol Biochem. 2022;167:108615. https://doi.org/10.1016/j.soilbio.2022.108615 .
doi: 10.1016/j.soilbio.2022.108615
Chen H, Li WJ, Zheng WN, Yin C, Fan XP, Ye MJ, Gao ZX, Wu CY, Liang YC. Linking nitrogen- and straw-sensitive indicator species and their co-occurrences to priming effect in agricultural soil exposed to long-term nitrogen fertilization. Soil Biol Biochem. 2023;176:108881. https://doi.org/10.1016/j.soilbio.2022.108881 .
doi: 10.1016/j.soilbio.2022.108881
Frey B, Moser B, Tytgat B, Zimmermann S, Alberti J, Biederman LA, Borer ET, Broadbent AAD, Caldeira MC, Davies KF, et al. Long-term N-addition alters the community structure of functionally important N-cycling soil microorganisms across global grasslands. Soil Biol Biochem. 2023;176:108887. https://doi.org/10.1016/j.soilbio.2022.108887 .
doi: 10.1016/j.soilbio.2022.108887
Zheng YY, Jin J, Wang XJ, Clark GJ, Franks A, Tang CX. Nitrogen addition increases the glucose-induced priming effect of the particulate but not the mineral-associated organic carbon fraction. Soil Biol Biochem. 2023;184:109106. https://doi.org/10.1016/J.SOILBIO.2023.109106 .
doi: 10.1016/J.SOILBIO.2023.109106
Xue R, Wang C, Zhao L, Sun B, Wang B. Agricultural intensification weakens the soil health index and stability of microbial networks. Agr Ecosyst Environ. 2022;339:108118. https://doi.org/10.1016/j.agee.2022.108118 .
doi: 10.1016/j.agee.2022.108118
Yuan M, Guo X, Wu L, Zhang Y, Xiao N, Ning D, et al. Climate warming enhances microbial network complexity and stability. Nat Clim Chang. 2021;11:343–8. https://doi.org/10.1038/s41558-021-00989-9 .
doi: 10.1038/s41558-021-00989-9
Delgado-Baquerizo M, Oliverio A, Brewer T, Benavent-González A, Eldridge D, Bardgett R, Maestre F, Singh B, Fierer N. A global atlas of the dominant bacteria found in soil. Science. 2018;359(6373):320–5. https://doi.org/10.1038/ncomms10541 .
doi: 10.1038/ncomms10541
pubmed: 29348236
Farag IF, Youssef NH, Elshahed MS. Global distribution patterns and pangenomic diversity of the candidate phylum Latescibacteria (WS3) Löffler FE, editor. Appl Environ Microbiol. 2017;83:e00521. https://doi.org/10.1128/AEM.00521-17 .
doi: 10.1128/AEM.00521-17
pubmed: 28314726
pmcid: 5411500
Loeuille N, Le Mao T, Barot S. Effects of plant evolution on nutrient cycling couple aboveground and belowground processes. Theor Ecol. 2017;10:117–27. https://doi.org/10.1007/s12080-016-0315-y .
doi: 10.1007/s12080-016-0315-y
Isobe K, Koba K, Otsuka S, Senoo K. Nitrification and nitrifying microbial communities in forest soils. J for Res. 2011;16:351–62.
doi: 10.1007/s10310-011-0266-5
Sui WK, Li J, Wu XG, Wu QY, Ma YM, Zhang XY, Zhang XJ. Microbial mechanism of sulfide inhibiting N
doi: 10.13344/j.microbiol.china.200363
Meng XT, Li YY, Zhang Y, Yao HY. Green manure application improves rice growth and urea nitrogen use efficiency assessed using
doi: 10.1080/00380768.2019.1635872
Wild B, Li J, Pihlblad J, Bengtson P, Rütting T. Decoupling of priming and microbial N mining during a short-term soil incubation. Soil Bio Biochem. 2019;129:71–9. https://doi.org/10.1016/j.soilbio.2018.11.014 .
doi: 10.1016/j.soilbio.2018.11.014