Iron-sulphur protein catalysed [4+2] cycloadditions in natural product biosynthesis.


Journal

Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555

Informations de publication

Date de publication:
10 Jul 2024
Historique:
received: 29 05 2024
accepted: 02 07 2024
medline: 11 7 2024
pubmed: 11 7 2024
entrez: 10 7 2024
Statut: epublish

Résumé

To the best of our knowledge, enzymes that catalyse intramolecular Diels-Alder ([4+2] cycloaddition) reactions are frequently reported in natural product biosynthesis; however, no native enzymes utilising Lewis acid catalysis have been reported. Verticilactam is a representative member of polycyclic macrolactams, presumably produced by spontaneous cycloaddition. We report that the intramolecular [4+2] cycloadditions can be significantly accelerated by ferredoxins (Fds), a class of small iron-sulphur (Fe-S) proteins. Through iron atom substitution by Lewis acidic gallium (Ga) iron and computational calculations, we confirm that the ubiquitous Fe-S cluster efficiently functions as Lewis acid to accelerate the tandem [4+2] cycloaddition and Michael addition reactions by lowering free energy barriers. Our work highlights Nature's ingenious strategy to generate complex molecule structures using the ubiquitous Fe-S protein. Furthermore, our study sheds light on the future design of Fd as a versatile Lewis acid catalyst for [4+2] cycloaddition reactions.

Identifiants

pubmed: 38987535
doi: 10.1038/s41467-024-50142-1
pii: 10.1038/s41467-024-50142-1
doi:

Substances chimiques

Biological Products 0
Iron-Sulfur Proteins 0
Lewis Acids 0
Iron E1UOL152H7
Lactams 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

5779

Subventions

Organisme : MEXT | Japan Society for the Promotion of Science (JSPS)
ID : 20H00416

Informations de copyright

© 2024. The Author(s).

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Auteurs

Yu Zheng (Y)

Natural Product Biosynthesis Research Unit, RIKEN Center for Sustainable Resource Science, Saitama, 351-0198, Japan.

Katsuyuki Sakai (K)

Natural Product Biosynthesis Research Unit, RIKEN Center for Sustainable Resource Science, Saitama, 351-0198, Japan.

Kohei Watanabe (K)

Graduate School of Pharmaceutical Sciences, The University of Tokyo, Tokyo, 113-0033, Japan.

Hiroshi Takagi (H)

Natural Product Biosynthesis Research Unit, RIKEN Center for Sustainable Resource Science, Saitama, 351-0198, Japan.

Yumi Sato-Shiozaki (Y)

Natural Product Biosynthesis Research Unit, RIKEN Center for Sustainable Resource Science, Saitama, 351-0198, Japan.

Yuko Misumi (Y)

Institute for Protein Research, Osaka University, Osaka, 565-0871, Japan.

Yohei Miyanoiri (Y)

Institute for Protein Research, Osaka University, Osaka, 565-0871, Japan.

Genji Kurisu (G)

Institute for Protein Research, Osaka University, Osaka, 565-0871, Japan.

Toshihiko Nogawa (T)

Molecular Structure Characterization Unit, RIKEN Center for Sustainable Resource Science, Saitama, 351-0198, Japan.

Ryo Takita (R)

Graduate School of Pharmaceutical Sciences, The University of Tokyo, Tokyo, 113-0033, Japan.
Graduate School of Pharmaceutical Sciences, University of Shizuoka, Shizuoka, 422-8526, Japan.

Shunji Takahashi (S)

Natural Product Biosynthesis Research Unit, RIKEN Center for Sustainable Resource Science, Saitama, 351-0198, Japan. shunjitaka@riken.jp.

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