Recent approaches in the application of antimicrobial peptides in food preservation.
Applications
Bioinformatics
Challenges
Fabrication
In silico
Nanoparticles
Packaging
Journal
World journal of microbiology & biotechnology
ISSN: 1573-0972
Titre abrégé: World J Microbiol Biotechnol
Pays: Germany
ID NLM: 9012472
Informations de publication
Date de publication:
09 Sep 2024
09 Sep 2024
Historique:
received:
13
07
2024
accepted:
29
08
2024
medline:
9
9
2024
pubmed:
9
9
2024
entrez:
9
9
2024
Statut:
epublish
Résumé
Antimicrobial peptides (AMPs) are small peptides existing in nature as an important part of the innate immune system in various organisms. Notably, the AMPs exhibit inhibitory effects against a wide spectrum of pathogens, showcasing potential applications in different fields such as food, agriculture, medicine. This review explores the application of AMPs in the food industry, emphasizing their crucial role in enhancing the safety and shelf life of food and how they offer a viable substitute for chemical preservatives with their biocompatible and natural attributes. It provides an overview of the recent advancements, ranging from conventional approaches of using natural AMPs derived from bacteria or other sources to the biocomputational design and usage of synthetic AMPs for food preservation. Recent innovations such as structural modifications of AMPs to improve safety and suitability as food preservatives have been discussed. Furthermore, the active packaging and creative fabrication strategies such as nano-formulation, biopolymeric peptides and casting films, for optimizing the efficacy and stability of these peptides in food systems are summarized. The overall focus is on the spectrum of applications, with special attention to potential challenges in the usage of AMPs in the food industry and strategies for their mitigation.
Identifiants
pubmed: 39249587
doi: 10.1007/s11274-024-04126-4
pii: 10.1007/s11274-024-04126-4
doi:
Substances chimiques
Food Preservatives
0
Antimicrobial Peptides
0
Anti-Infective Agents
0
Types de publication
Journal Article
Review
Langues
eng
Sous-ensembles de citation
IM
Pagination
315Informations de copyright
© 2024. The Author(s), under exclusive licence to Springer Nature B.V.
Références
Agrawal P, Raghava GPS (2018) Prediction of antimicrobial potential of a chemically modified peptide from its tertiary structure. Front Microbiol 9:418508. https://doi.org/10.3389/fmicb.2018.02551
doi: 10.3389/fmicb.2018.02551
Agrillo B, Balestrieri M, Gogliettino M, Palmieri G, Moretta R, Proroga YT, Rea I, Cornacchia A, Capuano F, Smaldone G, De Stefano L (2019) Functionalized polymeric materials with bio-derived antimicrobial peptides for “active” packaging. Int J Mol Sci 20(3):601. https://doi.org/10.3390/ijms20030601
doi: 10.3390/ijms20030601
pubmed: 30704080
pmcid: 6387462
Aguilera-Puga MD, Cancelarich NL, Marani MM, de la Fuente-Nunez C, Plisson F (2023) Accelerating the discovery and design of antimicrobial peptides with artificial intelligence. Computational drug discovery and design, New York. Springer, NY, pp 329–352
Agyei D, Tsopmo A, Udenigwe CC (2018) Bioinformatics and peptidomics approaches to the discovery and analysis of food-derived bioactive peptides. Anal Bioanal Chem 410:3463–3472. https://doi.org/10.1007/s00216-018-0974-1
doi: 10.1007/s00216-018-0974-1
pubmed: 29516135
Al-sahlany STG, Altemimi AB, Al-Manhel AJ, Niamah AK, Lakhssassi N, Ibrahim SA (2020) Purification of bioactive peptide with antimicrobial properties produced by Saccharomyces cerevisiae. Food 9:324–325. https://doi.org/10.3390/foods9030324
doi: 10.3390/foods9030324
Arulrajah B, Muhialdin BJ, Qoms MS, Zarei M, Hussin ASM, Hasan H, Saari N (2021) Production of cationic antifungal peptides from kenaf seed protein as natural bio preservatives to prolong the shelf-life of tomato puree. Int J Food Microbiol 359:109418. https://doi.org/10.1016/j.ijfoodmicro.2021.109418
doi: 10.1016/j.ijfoodmicro.2021.109418
pubmed: 34607033
Baindara P, Mandal SM (2022) Plant-derived antimicrobial peptides: novel preservatives for the food industry. Foods 11(16):2415. https://doi.org/10.3390/foods11162415
doi: 10.3390/foods11162415
pubmed: 36010415
pmcid: 9407122
Baranwal J, Barse B, Fais A, Delogu GL, Kumar A (2022) Biopolymer: a sustainable material for food and medical applications. Polymers 14(5):983. https://doi.org/10.3390/polym14050983
doi: 10.3390/polym14050983
pubmed: 35267803
pmcid: 8912672
Bi J, Tian C, Jiang J, Zhang GL, Hao H, Hou HM (2020) Antibacterial activity and potential application in food packaging of peptides derived from turbot viscera hydrolysate. J Agric Food Chem 68(37):9968–9977. https://doi.org/10.1021/acs.jafc.0c03146
doi: 10.1021/acs.jafc.0c03146
pubmed: 32841003
Bitencourt NV, Righetto GM, Camargo ILBC, de Godoy MO, Guido RVC, Oliva G, Santos-Filho NA, Cilli EM (2023) Effects of dimerization, dendrimerization, and chirality in p-BthTX-I peptide analogs on the antibacterial activity and enzymatic inhibition of the SARS-CoV-2 PLpro protein. Pharmaceutics 15(2):436. https://doi.org/10.3390/pharmaceutics15020436
doi: 10.3390/pharmaceutics15020436
pubmed: 36839758
pmcid: 9964244
Bizani D, Morrissy JA, Dominguez AP, Brandelli A (2008) Inhibition of Listeria monocytogenes in dairy products using the bacteriocin-like peptide cerein 8A. Int J Food Microbiol 121(2):229–233. https://doi.org/10.1016/j.ijfoodmicro.2007.11.016
doi: 10.1016/j.ijfoodmicro.2007.11.016
pubmed: 18068253
Boix-Lemonche G, Lekka M, Skerlavaj B (2020) A rapid fluorescence-based microplate assay to investigate the interaction of membrane active antimicrobial peptides with whole gram-positive bacteria. Antibiotics 9:92. https://doi.org/10.3390/antibiotics9020092
doi: 10.3390/antibiotics9020092
pubmed: 32093104
pmcid: 7168298
Bondi M, Messi P, Halami PM, Papadopoulou C, De Niederhausern S (2014) Emerging microbial concerns in food safety and new control measures. BioMed Res Int. https://doi.org/10.1155/2014/251512
doi: 10.1155/2014/251512
pubmed: 25110665
pmcid: 4109624
Bournez C, Riool M, de Boer L, Cordfunke RA, de Best L, van Leeuwen R, Drijfhout JW, Zaat SA, van Westen GJ (2023) CalcAMP: A new machine learning model for the accurate prediction of antimicrobial activity of peptides. Antibiotics (Basel) 12(4):725. https://doi.org/10.3390/antibiotics12040725
doi: 10.3390/antibiotics12040725
pubmed: 37107088
Brockgreitens J, Abbas A (2016) Responsive food packaging: recent progress and technological prospects. Compr Rev Food Sci Food Saf 15(1):3–15. https://doi.org/10.1111/1541-4337.12174
doi: 10.1111/1541-4337.12174
pubmed: 33371571
Chaudhary K, Kumar R, Singh S, Tuknait A, Gautam A, Mathur D, Anand P, Varshney GC, Raghava GP (2016) A web server and mobile app for computing hemolytic potency of peptides. Sci Rep 6(1):22843. https://doi.org/10.1038/srep22843
doi: 10.1038/srep22843
pubmed: 26953092
pmcid: 4782144
Chiloeches A, Zágora J, Plachá D, Torres MD, de la Fuente-Nunez C, López-Fabal F, Gil-Romero Y, Fernández-García R, Fernández-García M, Echeverría C, Muñoz-Bonilla A (2023) Synergistic combination of antimicrobial peptides and cationic polyitaconates in multifunctional PLA fibers. ACS Appl Bio Mater 6(11):4805–4813. https://doi.org/10.1021/acsabm.3c00576
doi: 10.1021/acsabm.3c00576
pubmed: 37862451
pmcid: 10852355
Crits-Christoph A, Hallowell HA, Koutouvalis K, Suez J (2022) Good microbes, bad genes? The dissemination of antimicrobial resistance in the human microbiome. Gut Microbes 14(1):2055944. https://doi.org/10.1080/19490976.2022.2055944
doi: 10.1080/19490976.2022.2055944
pubmed: 35332832
pmcid: 8959533
Cui H, Wu J, Li C, Lin L (2017) Improving anti-listeria activity of cheese packaging via nanofiber containing nisin-loaded nanoparticles. LWT 81:233–242. https://doi.org/10.1016/j.lwt.2017.04.003
doi: 10.1016/j.lwt.2017.04.003
Dang X, Zheng X, Wang Y, Wang L, Ye L, Jiang J (2020) Antimicrobial peptides from the edible insect Musca domestica and their preservation effect on chilled pork. J Food Process Preserv 44(3):14369. https://doi.org/10.1111/jfpp.14369
doi: 10.1111/jfpp.14369
Dijksteel GS, Ulrich MM, Middelkoop E, Boekema BK (2021) Lessons learned from clinical trials using antimicrobial peptides (AMPs). Front Microbiol 12:616979. https://doi.org/10.3389/fmicb.2021.616979
doi: 10.3389/fmicb.2021.616979
pubmed: 33692766
pmcid: 7937881
Dong B, Wang Y, Cui G, Wang Y, Lin Y, Su Z, Zhao G (2024) In vitro antimicrobial activity of the novel antimicrobial peptide mytimacin-4 and its influence on the microbial community and quality of pork during refrigerated storage. Food Control 163:110486. https://doi.org/10.1016/j.foodcont.2024.110486
doi: 10.1016/j.foodcont.2024.110486
Duarte LG, Picone CS (2022) Antimicrobial activity of lactoferrin-chitosan-gellan nanoparticles and their influence on strawberry preservation. Food Res Int 159:111586. https://doi.org/10.1016/j.foodres.2022.111586
doi: 10.1016/j.foodres.2022.111586
pubmed: 35940786
El-Saadony MT, Abd El-Hack ME, Swelum AA, Al-Sultan SI, El-Ghareeb WR, Hussein EO, Ba-Awadh HA, Akl BA, Nader MM (2021) Enhancing quality and safety of raw buffalo meat using the bioactive peptides of pea and red kidney bean under refrigeration conditions. Ital J Anim Sci 20(1):762–776. https://doi.org/10.1080/1828051X.2021.1926346
doi: 10.1080/1828051X.2021.1926346
Field D, Fernandez de Ullivarri M, Ross RP, Hill C (2023) After a century of nisin research-where are we now? FEMS Microbiol Rev 47(3):fuad023. https://doi.org/10.1093/femsre/fuad023
doi: 10.1093/femsre/fuad023
pubmed: 37300874
pmcid: 10257480
Fingerhut LC, Miller DJ, Strugnell JM, Daly NL, Cooke IR (2020) ampir: an R package for fast genome-wide prediction of antimicrobial peptides. Bioinformatics 36(21):5262–5263. https://doi.org/10.1093/bioinformatics/btaa653
doi: 10.1093/bioinformatics/btaa653
Gasteiger E, Hoogland C, Gattiker A, Wilkins MR, Appel RD, Bairoch A (2005) Protein identification and analysis tools on the Expasy server. In: Walker JM (ed) The proteomics protocols handbook. Humana Press, Totowa, pp 571–607
doi: 10.1385/1-59259-890-0:571
Giacometti J, Buretić-Tomljanović A (2017) Peptidomics as a tool for characterizing bioactive milk peptides. Food Chem 230:91–98. https://doi.org/10.1016/j.foodchem.2017.03.016
doi: 10.1016/j.foodchem.2017.03.016
pubmed: 28407976
Graf M, Mardirossian M, Nguyen F, Seefeldt AC, Guichard G, Scocchi M, Innis CA, Wilson DN (2017) Proline-rich antimicrobial peptides targeting protein synthesis. Nat Prod Rep 34(7):702–711. https://doi.org/10.1039/C7NP00020K
doi: 10.1039/C7NP00020K
pubmed: 28537612
Grande MJ, Lucas R, Abriouel H, Omar NB, Maqueda M, Martínez-Bueno M, Martínez-Cañamero M, Valdivia E, Gálvez A (2005) Control of Alicyclobacillus acidoterrestris in fruit juices by enterocin AS-48. Int J Food Microbiol 104(3):289–297. https://doi.org/10.1016/j.ijfoodmicro.2005.03.010
doi: 10.1016/j.ijfoodmicro.2005.03.010
pubmed: 15979752
Gupta S, Ansari HR, Gautam A, Open-Source Drug Discovery Consortium, Raghava GP (2013) Identification of B-cell epitopes in an antigen for inducing specific class of antibodies. Biol Direct 8:1–15. https://doi.org/10.1186/1745-6150-8-27
doi: 10.1186/1745-6150-8-27
Gupta S, Kapoor P, Chaudhary K, Gautam A, Kumar R, Open-Source Drug Discovery Consortium, Raghava GP (2013) In silico approach for predicting toxicity of peptides and proteins. PLoS ONE 8(9):73957. https://doi.org/10.1371/journal.pone.0073957
doi: 10.1371/journal.pone.0073957
Gupta R, Srivastava S (2014) Antifungal effect of antimicrobial peptides (AMPs LR14) derived from Lactobacillus plantarum strain LR/14 and their applications in prevention of grain spoilage. Food Microbiol 42:1–7. https://doi.org/10.1016/j.fm.2014.02.005
doi: 10.1016/j.fm.2014.02.005
pubmed: 24929709
Hazam PK, Selvaraj SP, Negi A, Lin WC, Chen JY (2024) Use of natural peptide TP4 as a food preservative prevents contamination by fungal pathogens. Food Chem 455:139874. https://doi.org/10.1016/j.foodchem.2024.139874
doi: 10.1016/j.foodchem.2024.139874
pubmed: 38838624
Hemmati F, Bahrami A, Esfanjani AF, Hosseini H, McClements DJ, Williams L (2021) Electrospun antimicrobial materials: advanced packaging materials for food applications. Trends Food Sci Technol 111:520–533. https://doi.org/10.1016/j.tifs.2021.03.014
doi: 10.1016/j.tifs.2021.03.014
Hilpert K, Fjell CD, Cherkasov A (2008) Short linear cationic antimicrobial peptides: screening, optimizing, and prediction. In: Otvos L (ed) Peptide-based drug design. Springer, Berlin, pp 127–159
doi: 10.1007/978-1-59745-419-3_8
Hiss JA, Hartenfeller M, Schneider G (2010) Concepts and applications of “natural computing” techniques in de novo drug and peptide design. Curr Pharm Des 16:1656–1665. https://doi.org/10.2174/138161210791164009
doi: 10.2174/138161210791164009
pubmed: 20222857
Hou J, Li YQ, Wang ZS, Sun GJ, M HZ, (2017) Applicative effect of glycinin basic polypeptide in fresh wet noodles and antifungal characteristics. LWT 83:267–274. https://doi.org/10.1016/j.lwt.2017.05.028
doi: 10.1016/j.lwt.2017.05.028
Huan Y, Kong Q, Mou H, Yi H (2020) Antimicrobial peptides: classification, design, application and research progress in multiple fields. Front Microbiol 11:582779. https://doi.org/10.3389/fmicb.2020.582779
doi: 10.3389/fmicb.2020.582779
pubmed: 33178164
pmcid: 7596191
Huang RH, Xiang Y, Liu XZ, Zhang Y, Hu Z, Wang DC (2002) Two novel antifungal peptides distinct with a five-disulfide motif from the bark of Eucommia ulmoides Oliv. FEBS Lett 521:87–90. https://doi.org/10.1016/s0014-5793(02)02829-6
doi: 10.1016/s0014-5793(02)02829-6
pubmed: 12067732
Imran M, Revol-Junelles AM, René N, Jamshidian M, Akhtar MJ, Arab-Tehrany E, Jacquot M, Desobry S (2012) Microstructure and physico-chemical evaluation of nano-emulsion-based antimicrobial peptides embedded in bioactive packaging films. Food Hydrocoll 29(2):407–419. https://doi.org/10.1016/j.foodhyd.2012.04.010
doi: 10.1016/j.foodhyd.2012.04.010
Jabeen U, Khanum A (2017) Isolation and characterization of potential food preservative peptide from Momordica charantia L. Arab J Chem 10:3982–3989. https://doi.org/10.1016/j.arabjc.2014.06.009
doi: 10.1016/j.arabjc.2014.06.009
Jamróz E, Kulawik P, Kopel P (2019) The effect of nanofillers on the functional properties of biopolymer-based films: a review. Polymers 11:1–42. https://doi.org/10.3390/polym11040675
doi: 10.3390/polym11040675
Jamróz E, Kulawik P, Tkaczewska J, Guzik P, Zając M, Juszczak L, Krzyściak P, Turek K (2021) The effects of active double-layered furcellaran/gelatin hydrolysate film system with Ala-Tyr peptide on fresh Atlantic mackerel stored at −18°C. Food Chem 338:127867. https://doi.org/10.1016/j.foodchem.2020.127867
doi: 10.1016/j.foodchem.2020.127867
pubmed: 32829293
Jha B, Singh S (2023) Investigating antimicrobial peptide RI12 (K3W) as an effective bio-preservative against Listeria monocytogenes: a major foodborne pathogen. Arch Microbiol 205(12):367. https://doi.org/10.1007/s00203-023-03707-5
doi: 10.1007/s00203-023-03707-5
pubmed: 37917273
Jhong JH, Chi YH, Li WC (2019) AMP: an integrated resource for exploring antimicrobial peptides with functional activities and physicochemical properties on transcriptome and proteome data. Nucleic Acids Res 8(47):285–297. https://doi.org/10.1093/nar/gky1030
doi: 10.1093/nar/gky1030
Jia L, Yarlagadda R, Reed CC (2015) Structure based thermostability prediction models for protein single point mutations with machine learning tools. PLoS ONE 10:e0138022. https://doi.org/10.1371/journal.pone.0138022
doi: 10.1371/journal.pone.0138022
pubmed: 26361227
pmcid: 4567301
Jordan O, Gan BH, Alwan S, Perron K, Sublet E, Ducret V, Ye H, Borchard G, Reymond JL, Patrulea V (2024) Highly potent cationic chitosan derivatives coupled to antimicrobial peptide dendrimers to combat Pseudomonas aeruginosa. Adv Healthc Mater. https://doi.org/10.1002/adhm.202304118
doi: 10.1002/adhm.202304118
pubmed: 39219219
Jordá-Vilaplana A, Fombuena V, García-García D, Samper MD, Sánchez-Nácher L (2014) Surface modification of polylactic acid (PLA) by air atmospheric plasma treatment. Eur Polym J 58:23–33. https://doi.org/10.1016/j.eurpolymj.2014.06.002
doi: 10.1016/j.eurpolymj.2014.06.002
Joseph S, Karnik S, Nilawe P, Jayaraman VK, Idicula-Thomas S (2012) ClassAMP: a prediction tool for classification of antimicrobial peptides. IEEE/ACM Trans Comput Biol Bioinform 9(5):1535–1538. https://doi.org/10.1109/TCBB.2012.89
doi: 10.1109/TCBB.2012.89
pubmed: 22732690
Kamech N, Vukicevic D, Ladram A, Piesse C, Vasseur J, Bojovic V, Simunic J, Juretic D (2012) Improving the selectivity of antimicrobial peptides from anuran skin. J Chem Inf Model 52(12):3341–3351. https://doi.org/10.1021/ci300328y
doi: 10.1021/ci300328y
pubmed: 23094651
Kavousi K, Bagheri M, Behrouzi S, Vafadar S, Atanaki FF, Lotfabadi BT, Ariaeenejad S, Shockravi A, Moosavi-Movahedi AA (2020) IAMPE: NMR-assisted computational prediction of antimicrobial peptides. J Chem Inf Model 60(10):4691–4701. https://doi.org/10.1021/acs.jcim.0c00841
doi: 10.1021/acs.jcim.0c00841
pubmed: 32946226
Khabbaz H, Karimi-Jafari MH, Saboury AA, BabaAli B (2021) Prediction of antimicrobial peptides toxicity based on their physico-chemical properties using machine learning techniques. BMC Bioinform 22:1–1. https://doi.org/10.1186/s12859-021-04468-y
doi: 10.1186/s12859-021-04468-y
Kumari A, Singh M, Sharma R, Kumar T, Jindal N, Maan S, Joshi VG (2023) Apoptin NLS2 homodimerization strategy for improved antibacterial activity and bio-stability. Amino Acids 55(10):1405–1416. https://doi.org/10.1007/s00726-023-03321-1
doi: 10.1007/s00726-023-03321-1
pubmed: 37725185
Lata S, Mishra NK, Raghava GPS (2009) AntiBP2: improved version of antibacterial peptide prediction. BMC Bioinform 11:1–7. https://doi.org/10.1186/1471-2105-11-S1-S19
doi: 10.1186/1471-2105-11-S1-S19
Lawrence TJ, Carper DL, Spangler MK, Carrell AA, Rush TA, Minter SJ, Weston DJ, Labbé JL (2021) amPEPpy 1.0: a portable and accurate antimicrobial peptide prediction tool. Bioinformatics 37(14):2058–2060. https://doi.org/10.1093/bioinformatics/btaa917
doi: 10.1093/bioinformatics/btaa917
pubmed: 33135060
Lee HT, Lee CC, Yang JR, Lai JZ, Chang KY (2015) A large-scale structural classification of antimicrobial peptides. Biomed Res Int 1:475062. https://doi.org/10.1155/2015/475062
doi: 10.1155/2015/475062
Lee J, Ryu M, Bae D (2022) Development of DNA aptamers specific for small therapeutic peptides using a modified SELEX method. J Microbiol 60(7):659–667. https://doi.org/10.1007/s12275-022-2235-4
doi: 10.1007/s12275-022-2235-4
pubmed: 35731347
Lima KO, de Quadros CDC, da Rocha M, de Lacerda JTJG, Juliano MA, Dias M, Mendes MA, Prentice C (2019) Bioactivity and bioaccessibility of protein hydrolyzates from industrial byproducts of Stripped weakfish (Cynoscion guatucupa). LWT 111:408–413. https://doi.org/10.1016/j.lwt.2019.05.043
doi: 10.1016/j.lwt.2019.05.043
Liu B, Zhang W, Gou S, Huang H, Yao J, Yang Z, Liu H, Zhong C, Liu B, Ni J, Wang R (2017) Intramolecular cyclization of the antimicrobial peptide Polybia-MPI with triazole stapling: influence on stability and bioactivity. J Pept Sci 23(11):824–832. https://doi.org/10.1002/psc.3031
doi: 10.1002/psc.3031
pubmed: 28833783
Lombardi L, Maisetta G, Batoni G, Tavanti A (2015) Insights into the antimicrobial properties of hepcidins: advantages and drawbacks as potential therapeutic agents. Molecules 20(4):6319–41. https://doi.org/10.3390/molecules20046319
doi: 10.3390/molecules20046319
pubmed: 25867823
pmcid: 6272296
Lu D, Chen Y, Xie Q, Qiu Z, Zhang H, Sun P, Pan J, Wang Y (2022) Preparation of bioactive peptides from marine industrial waste for moon cake preservation by coating. J Food Process Preserv 46(12):e17221. https://doi.org/10.1111/jfpp.17221
doi: 10.1111/jfpp.17221
Lund MN, Ray CA (2017) Control of Maillard reactions in foods: strategies and chemical mechanisms. J Agric Food Chem 65(23):4537–4552. https://doi.org/10.1021/acs.jafc.7b00882
doi: 10.1021/acs.jafc.7b00882
pubmed: 28535048
Luo X, Chen H, Song Y, Qin Z, Xu L, He N, Tan Y, Dessie W (2023) Advancements, challenges and future perspectives on peptide-based drugs: focus on antimicrobial peptides. Eur J Pharm Sci 181:106363. https://doi.org/10.1016/j.ejps.2022.106363
doi: 10.1016/j.ejps.2022.106363
pubmed: 36529161
Luz C, Calpe J, Saladino F, Luciano FB, Fernandez-Franzón M, Mañes J, Meca G (2018) Antimicrobial packaging based on ϵ-polylysine bioactive film for the control of mycotoxigenic fungi in vitro and in bread. J Food Process Preserv 42:e13370. https://doi.org/10.1111/jfpp.13370
doi: 10.1111/jfpp.13370
pubmed: 29456275
Malheiros PdaS, Sant’Anna V, de Souza BM, Brandelli A, de Melo Franco BDG (2012) Effect of liposome-encapsulated nisin and bacteriocin-like substance P34 on Listeria monocytogenes growth in Minas frescal cheese. Int J Food Microbiol 156(3):272–277. https://doi.org/10.1016/j.ijfoodmicro.2012.04.004
doi: 10.1016/j.ijfoodmicro.2012.04.004
pubmed: 22554928
Meena M, Prajapati P, Ravichandran C, Sehrawat R (2021) Natamycin: a natural preservative for food applications-a review. Food Sci Biotechnol 30(12):1481–1496. https://doi.org/10.1007/s10068-021-00981-1
doi: 10.1007/s10068-021-00981-1
pubmed: 34868698
pmcid: 8595390
Meher PK, Sahu TK, Saini V, Rao AR (2017) Predicting antimicrobial peptides with improved accuracy by incorporating the compositional, physico-chemical and structural features into Chou’s general PseAAC. Sci Rep 7(1):1–12. https://doi.org/10.1038/srep42362
doi: 10.1038/srep42362
Meira SMM, Zehetmeyer G, Werner JO, Brandelli A (2017) A novel active packaging material based on starch-halloysite nanocomposites incorporating antimicrobial peptides. Food Hydrocoll 63:561–570. https://doi.org/10.1016/j.foodhyd.2016.10.013
doi: 10.1016/j.foodhyd.2016.10.013
Melo MC, Maasch JR, de la Fuente-Nunez C (2021) Accelerating antibiotic discovery through artificial intelligence. Commun Biol 4(1):1050. https://doi.org/10.1038/s42003-021-02586-0
doi: 10.1038/s42003-021-02586-0
pubmed: 34504303
pmcid: 8429579
Mironov PA, Paramonov AS, Reznikova OV, Safronova VN, Panteleev PV, Bolosov IA, Ovchinnikova TV, Shenkarev ZO (2024) Dimerization of the β-hairpin membrane-active cationic antimicrobial peptide capitellacin from marine polychaeta: an NMR structural and thermodynamic study. Biomolecules 14(3):332. https://doi.org/10.3390/biom14030332
doi: 10.3390/biom14030332
pubmed: 38540752
pmcid: 10968102
Mitchell JB (2014) Machine learning methods in chemoinformatics. Wiley Interdiscipl Rev 4:468–481. https://doi.org/10.1002/wcms.1183
doi: 10.1002/wcms.1183
Mohanty DP, Mohapatra S, Misra S, Sahu DP (2016) Milk derived bioactive peptides and their impact on human health–a review. Saudi J Biol Sci 23(5):577–583. https://doi.org/10.1016/j.sjbs.2015.06.005
doi: 10.1016/j.sjbs.2015.06.005
pubmed: 27579006
Molinos AC, Abriouel H, Lopez RL, Valdivia E, Omar NB, Galvez A (2008) Combined physico-chemical treatments based on enterocin AS-48 for inactivation of Gram-negative bacteria in soybean sprouts. Food Chem Toxicol 46:2912–2921. https://doi.org/10.1016/j.fct.2008.05.035
doi: 10.1016/j.fct.2008.05.035
Mozafari MR, Khosravi-Darani K, Borazan GG, Cui J, Pardakhty A, Yurdugul S (2008) Encapsulation of food ingredients using nanoliposome technology. Int J Food Prop 11(4):833–844. https://doi.org/10.1080/10942910701648115
doi: 10.1080/10942910701648115
Nie T, Meng F, Zhou L, Lu F, Bie X, Lu Z, Lu Y (2021) In silico development of novel chimeric lysins with highly specific inhibition against Salmonella by computer-aided design. J Agric Food Chem 69(12):3751–3760. https://doi.org/10.1021/acs.jafc.0c07450
doi: 10.1021/acs.jafc.0c07450
pubmed: 33565867
Ning HQ, Wang ZS, Li YQ, Tian WL, Sun GJ, Mo HZ (2019) Effects of glycinin basic polypeptide on the textural and physicochemical properties of Scomberomorus niphonius surimi. LWT 114:108328. https://doi.org/10.1016/j.lwt.2019.10832
doi: 10.1016/j.lwt.2019.10832
Noonan J, Williams WP, Shan X (2017) Investigation of antimicrobial peptide genes associated with fungus and insect resistance in maize. Int J Mol Sci 18(9):1938. https://doi.org/10.3390/ijms18091938
doi: 10.3390/ijms18091938
pubmed: 28914754
pmcid: 5618587
Okella H, Okello E, Mtewa AG, Ikiriza H, Kaggwa B, Aber J, Ndekezi C, Nkamwesiga J, Ajayi CO, Mugeni IM, Ssentamu G, Ochwo S, Odongo S, Tolo CU, Kato CD, Engeu PO (2022) ADMET profiling and molecular docking of potential antimicrobial peptides previously isolated from African catfish, Clarias gariepinus. Front Mol Biosci 9:1039286. https://doi.org/10.3389/fmolb.2022.1039286
doi: 10.3389/fmolb.2022.1039286
pubmed: 36567944
pmcid: 9772024
Oshiro KG, Candido ES, Chan LY, Torres MD, Monges BE, Rodrigues SG, Porto WF, Ribeiro SM, Henriques ST, Lu TK, de la Fuente-Núñez C (2019) Computer-aided design of mastoparan-like peptides enables the generation of nontoxic variants with extended antibacterial properties. J Med Chem 62(17):8140–8151. https://doi.org/10.1021/acs.jmedchem.9b00915
doi: 10.1021/acs.jmedchem.9b00915
pubmed: 31411881
Peng J, Zheng F, Wei L, Lin H, Jiang J, Hui G (2018) Jumbo squid (Dosidicus gigas) quality enhancement using complex bio-preservative during cold storage. J Food Meas Character 12(1):78–86. https://doi.org/10.1007/s11694-017-9618-y
doi: 10.1007/s11694-017-9618-y
Porto WF, Silva ON, Franco OL (2012) Prediction and rational design of antimicrobial peptides. In: Faraggi E (ed) Protein structure. InTech, London, pp 377–396
Porto WF, Fensterseifer IC, Ribeiro SM, Franco OL (2018) Joker: an algorithm to insert patterns into sequences for designing antimicrobial peptides. Biochim Biophys Acta Gen Subj 1862:2043–2052. https://doi.org/10.1016/j.bbagen.2018.06.011
doi: 10.1016/j.bbagen.2018.06.011
pubmed: 29928920
Przybylski R, Firdaous L, Châtaigné G, Dhulster P, Nedjar N (2016) Production of an antimicrobial peptide derived from slaughterhouse by-product and its potential application on meat as preservative. Food Chem 211:306–313. https://doi.org/10.1016/j.foodchem.2016.05.074
doi: 10.1016/j.foodchem.2016.05.074
pubmed: 27283637
Rai M, Pandit R, Gaikwad S, Kövics G (2016) Antimicrobial peptides as natural bio-preservative to enhance the shelf-life of food. J Food Sci Technol 53:3381–3394. https://doi.org/10.1007/s13197-016-2318-5
doi: 10.1007/s13197-016-2318-5
pubmed: 27777445
pmcid: 5069246
Rouhi A, Yousefi Y, Falah F, Azghandi M, Behbahani BA, Tabatabaei-Yazdi F, Vasiee A (2024) Exploring the potential of melittin peptide: expression, purification, anti-pathogenic properties, and promising applications as a bio-preservative for beef slices. LWT 199:116083. https://doi.org/10.1016/j.lwt.2024.116083
doi: 10.1016/j.lwt.2024.116083
Rounds T, Straus SK (2020) Lipidation of antimicrobial peptides as a design strategy for future alternatives to antibiotics. Int J Mol Sci 21(24):9692. https://doi.org/10.3390/ijms21249692
doi: 10.3390/ijms21249692
pubmed: 33353161
pmcid: 7766664
Santos JC, Sousa RC, Otoni CG, Moraes AR, Souza VG, Medeiros EA, Espitia PJ, Pires AC, Coimbra JS, Soares NF (2018) Nisin and other antimicrobial peptides: production, mechanisms of action, and application in active food packaging. Innov Food Sci Emerg Technol 48:179–194. https://doi.org/10.1016/j.ifset.2018.06.008
doi: 10.1016/j.ifset.2018.06.008
Santos-Filho NA, Righetto GM, Pereira MR, Piccoli JP, Almeida LMT, Leal TC, Camargo ILBC, Cilli EM (2021) Effect of C-terminal and N-terminal dimerization and alanine scanning on antibacterial activity of the analogs of the peptide p-BthTX-I. Pept Sci. https://doi.org/10.1002/pep2.24243
doi: 10.1002/pep2.24243
Selvarajan V, Tram NDT, Xu J, Ngen STY, Koh JJ, Teo JWP, Yuen TY, Ee PLR (2023) Stapled β-hairpin antimicrobial peptides with improved stability and activity against drug-resistant Gram-negative bacteria. J Med Chem 66(13):8498–8509. https://doi.org/10.1021/acs.jmedchem.3c00140
doi: 10.1021/acs.jmedchem.3c00140
pubmed: 37357499
pmcid: 10350921
Shabir U, Ali S, Magray AR, Ganai BA, Firdous P, Hassan T, Nazir R (2018) Fish antimicrobial peptides (AMPs) as essential and promising molecular therapeutic agents: a review. Microb Pathog 114:50–56. https://doi.org/10.1016/j.micpath.2017.11.039
doi: 10.1016/j.micpath.2017.11.039
pubmed: 29180291
Sharma A, Singla D, Rashid M, Raghava GPS (2014) Designing of peptides with desired half-life in intestine-like environment. BMC Bioinform 15:1–8. https://doi.org/10.1186/1471-2105-15-282
doi: 10.1186/1471-2105-15-282
Shwaiki LN, Arendt EK, Lynch KM (2020) Study on the characterization and application of synthetic peptide Snakin-1 derived from potato tubers—action against food spoilage yeast. Food Control 118:107362. https://doi.org/10.1016/j.foodcont.2020.107362
doi: 10.1016/j.foodcont.2020.107362
Singh RP, Heldman DR (2001) Introduction to food engineering. Gulf Professional Publishing, San Diego
Singh SS, Akhtar MN, Sharma D, Mandal SM, Korpole S (2021) Characterization of iturin V, a novel antimicrobial lipopeptide from a potential probiotic strain Lactobacillus sp. M31. Probiotics Antimicrob Proteins 13(6):1766–1779. https://doi.org/10.1007/s12602-021-09796-2
doi: 10.1007/s12602-021-09796-2
pubmed: 33987819
Singh A, Duche RT, Wandhare AG, Sian JK, Singh BP, Sihag MK, Singh KS, Sangwan V, Talan S, Panwar H (2023) Milk-derived antimicrobial peptides: overview, applications, and future perspectives. Probiotics Antimicrob Proteins 15:44–62. https://doi.org/10.1007/s12602-022-10004-y
doi: 10.1007/s12602-022-10004-y
pubmed: 36357656
Spaller BL, Trieu JM, Almeida PF (2013) Hemolytic activity of membrane-active peptides correlates with the thermodynamics of binding to 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine bilayers. J Membr Biol 246:257–262. https://doi.org/10.1007/s00232-013-9525-z
doi: 10.1007/s00232-013-9525-z
pubmed: 23329339
pmcid: 3584441
Sultana A, Luo H, Ramakrishna S (2021) Harvesting of antimicrobial peptides from insect (Hermetia illucens) and its applications in food packaging. Appl Sci 11(15):6991. https://doi.org/10.3390/app11156991
doi: 10.3390/app11156991
Tajer L, Paillart JC, Dib H, Sabatier JM, Fajloun Z, Abi Khattar Z (2024) Molecular mechanisms of bacterial resistance to antimicrobial peptides in the modern era: an updated review. Microorganisms 12(7):1259. https://doi.org/10.3390/microorganisms12071259
doi: 10.3390/microorganisms12071259
pubmed: 39065030
pmcid: 11279074
Tang R, Tan H, Dai Y, Li L, Huang Y, Yao H, Cai Y, Yu G (2023) Application of antimicrobial peptides in plant protection: making use of the overlooked merits. Front Plant Sci 14:1139539. https://doi.org/10.3389/fpls.2023.1139539
doi: 10.3389/fpls.2023.1139539
pubmed: 37538059
pmcid: 10394246
Tian L, Zhang D, Su P, Wei Y, Wang Z, Wang PX, Dai CJ, Gong GL (2019) Design, recombinant expression, and antibacterial activity of a novel hybrid magainin–thanatin antimicrobial peptide. Prep Biochem Biotechnol 49(5):427–434. https://doi.org/10.1080/10826068.2018.1476875
doi: 10.1080/10826068.2018.1476875
pubmed: 30861356
Timmons PB, Hewage CM (2020) HAPPENN is a novel tool for hemolytic activity prediction for therapeutic peptides which employs neural networks. Sci Rep 10:10869. https://doi.org/10.1038/s41598-020-67701-3
doi: 10.1038/s41598-020-67701-3
pubmed: 32616760
pmcid: 7331684
Torres MDT, de la Fuente-Núñez C (2019) Toward computer-made artificial antibiotics. Curr Opin Microbiol 51:30–38. https://doi.org/10.1016/j.mib.2019.03.004
doi: 10.1016/j.mib.2019.03.004
pubmed: 31082661
Udenigwe CC, Fogliano V (2017) Food matrix interaction and bioavailability of bioactive peptides: two faces of the same coin? J Funct Foods 35:9–12. https://doi.org/10.1016/j.jff.2017.05.029
doi: 10.1016/j.jff.2017.05.029
Veltri D, Kamath U, Shehu A (2018) Deep learning improves antimicrobial peptide recognition. Bioinformatics 34(16):2740–2747. https://doi.org/10.1093/bioinformatics/bty179
doi: 10.1093/bioinformatics/bty179
pubmed: 29590297
pmcid: 6084614
Vishnepolsky B, Grigolava M, Managadze G, Gabrielian A, Rosenthal A, Hurt DE, Tartakovsky M, Pirtskhalava M (2022) Comparative analysis of machine learning algorithms on the microbial strain-specific AMP prediction. Brief Bioinform. https://doi.org/10.1093/bib/bbac233
doi: 10.1093/bib/bbac233
pubmed: 35724561
pmcid: 9294419
Waghu FH, Idicula-Thomas S (2020) Collection of antimicrobial peptides database and its derivatives: applications and beyond. Protein Sci 29(1):36–42. https://doi.org/10.1002/pro.3714
doi: 10.1002/pro.3714
pubmed: 31441165
Wang W, Feng G, Li X, Ruan C, Ming J, Zeng K (2021) Inhibition of three citrus pathogenic fungi by peptide PAF56 involves cell membrane damage. Foods 10(9):2031. https://doi.org/10.3390/foods10092031
doi: 10.3390/foods10092031
pubmed: 34574141
pmcid: 8469410
Wang R, Wang T, Zhuo L, Wei J, Fu X, Zou Q, Yao X (2024) Diff-AMP: tailored designed antimicrobial peptide framework with all-in-one generation, identification, prediction and optimization. Brief Bioinform 25(2):pbbae078. https://doi.org/10.1093/bib/bbae078
doi: 10.1093/bib/bbae078
Wei D, Zhang X (2022) Biosynthesis, bioactivity, biotoxicity and applications of antimicrobial peptides for human health. Biosaf Health 25:118–134. https://doi.org/10.1016/j.bsheal.2022.02.003
doi: 10.1016/j.bsheal.2022.02.003
Win TS, Malik AA, Prachayasittikul V, Wikberg JEE, Nantasenamat C, Shoombuatong W (2017) HemoPred: a web server for predicting the hemolytic activity of peptides. Fut Med Chem 9(3):275–291. https://doi.org/10.4155/fmc-2016-0188
doi: 10.4155/fmc-2016-0188
Xiao J, Niu L (2015) Antilisterial peptides released by enzymatic hydrolysis from grass carp proteins and activity on controlling L. monocytogenes inoculated in surimi noodle. J Food Sci 80(11):M2564-9. https://doi.org/10.1111/1750-3841.13104
doi: 10.1111/1750-3841.13104
pubmed: 26467537
Xiao X, Wang P, Lin W-Z, Jia J-H, Chou K-C (2013) iAMP-2L: a two-level multi-label classifier for identifying antimicrobial peptides and their functional types. Anal Biochem 436:168–177. https://doi.org/10.1016/j.ab.2013.01.019
doi: 10.1016/j.ab.2013.01.019
pubmed: 23395824
Yang S, Li J, Aweya JJ, Yuan Z, Weng W, Zhang Y, Liu GM (2020) Antimicrobial mechanism of Larimichthys crocea whey acidic protein-derived peptide (LCWAP) against Staphylococcus aureus and its application in milk. Int J Food Microbiol 335:108891. https://doi.org/10.1016/j.ijfoodmicro.2020.108891
doi: 10.1016/j.ijfoodmicro.2020.108891
pubmed: 32977153
Yang X, Wang Y, Jiang H, Song R, Liu Y, Guo H, Meng D (2023) Antimicrobial peptide CB-M exhibits direct antifungal activity against Botrytis cinerea and induces disease resistance to gray mold in cherry tomato fruit. Postharvest Biol Technol 196:112184. https://doi.org/10.1016/j.postharvbio.2022.112184
doi: 10.1016/j.postharvbio.2022.112184
Yonezawa A, Kuwahara J, Fujii N, Sugiura Y (1992) Binding of Tachyplesin I to DNA revealed by footprinting analysis: significant contribution of secondary structure to DNA binding and implication for biological action. Biochemistry 31:2998–3004. https://doi.org/10.1021/bi00126a022
doi: 10.1021/bi00126a022
pubmed: 1372516
Zasloff M (2002) Antimicrobial peptides of multicellular origin. Nature 415:389–395. https://doi.org/10.1038/415389a
doi: 10.1038/415389a
pubmed: 11807545
Zhang S, Luo L, Sun X, Ma A (2021) Bioactive peptides: a promising alternative to chemical preservatives for food preservation. J Agric Food Chem 69(42):12369–12384. https://doi.org/10.1021/acs.jafc.1c04020
doi: 10.1021/acs.jafc.1c04020
pubmed: 34649436
Zhao Y, Zhang M, Qiu S, Wang J, Peng J, Zhao P, Zhu R, Wang H, Li Y, Wang K, Yan W (2016) Antimicrobial activity and stability of the D-amino acid substituted derivatives of antimicrobial peptide polybia-MPI. AMB Express 6:1–11. https://doi.org/10.1186/s13568-016-0295-8
doi: 10.1186/s13568-016-0295-8
Zhong C, Liu T, Gou S, He Y, Zhu N, Zhu Y, Wang L, Liu H, Zhang Y, Yao J, Ni J (2019) Design and synthesis of new N-terminal fatty acid modified-antimicrobial peptide analogues with potent in vitro biological activity. Eur J Med Chem 182:111636. https://doi.org/10.1016/j.ejmech.2019.111636
doi: 10.1016/j.ejmech.2019.111636
pubmed: 31466017