Web of venom: exploration of big data resources in animal toxin research.

Animals Venoms Internet Computational Biology / methods Big Data Databases, Factual
antivenom drug discovery genomics machine learning peptidomics proteomics toxin databases transcriptomics venom resources

Journal

GigaScience
ISSN: 2047-217X
Titre abrégé: Gigascience
Pays: United States
ID NLM: 101596872

Informations de publication

Date de publication:
02 Jan 2024
Historique:
received: 14 05 2024
revised: 01 07 2024
accepted: 13 07 2024
medline: 9 9 2024
pubmed: 9 9 2024
entrez: 9 9 2024
Statut: ppublish

Résumé

Research on animal venoms and their components spans multiple disciplines, including biology, biochemistry, bioinformatics, pharmacology, medicine, and more. Manipulating and analyzing the diverse array of data required for venom research can be challenging, and relevant tools and resources are often dispersed across different online platforms, making them less accessible to nonexperts. In this article, we address the multifaceted needs of the scientific community involved in venom and toxin-related research by identifying and discussing web resources, databases, and tools commonly used in this field. We have compiled these resources into a comprehensive table available on the VenomZone website (https://venomzone.expasy.org/10897). Furthermore, we highlight the challenges currently faced by researchers in accessing and using these resources and emphasize the importance of community-driven interdisciplinary approaches. We conclude by underscoring the significance of enhancing standards, promoting interoperability, and encouraging data and method sharing within the venom research community.

Identifiants

DOI: 10.1093/gigascience/giae054 PMID: 39250076
pubmed: 39250076
pii: 7753515
doi: 10.1093/gigascience/giae054
pii:
doi:

Substances chimiques

Venoms 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : European Cooperation in Science and Technology
Organisme : Fundação para a Ciência e a Tecnologia

Informations de copyright

© The Author(s) 2024. Published by Oxford University Press on behalf of GigaScience.

Auteurs

Giulia Zancolli (G)

Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.
SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
ORCID: 0000-0003-3060-2507

Björn Marcus von Reumont (BM)

Goethe University Frankfurt, Faculty of Biological Sciences, 60438 Frankfurt, Germany.
LOEWE Centre for Translational Biodiversity Genomics, 60325 Frankfurt, Germany.
ORCID: 0000-0002-7462-8226

Gregor Anderluh (G)

Department of Molecular Biology and Nanobiotechnology, National Institute of Chemistry, 1000 Ljubljana, Slovenia.
ORCID: 0000-0002-9916-8465

Figen Caliskan (F)

Department of Biology, Faculty of Science, Eskisehir Osmangazi University, 26040 Eskişehir, Turkey.
ORCID: 0000-0001-5241-7770

Maria Luisa Chiusano (ML)

Department of Agricultural Sciences, University Federico II of Naples, 80055 Portici, Naples, Italy.
Department of Research Infrastructures for Marine Biological Resources, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Naples, Italy.
ORCID: 0000-0002-6296-7132

Jacob Fröhlich (J)

Veterinary Center for Resistance Research (TZR), Freie Universität Berlin, 14163 Berlin, Germany.
ORCID: 0009-0001-5629-0882

Evroula Hapeshi (E)

Department of Health Sciences, School of Life and Health Sciences, University of Nicosia, 1700 Nicosia, Cyprus.
ORCID: 0000-0002-2785-145X

Benjamin-Florian Hempel (BF)

Veterinary Center for Resistance Research (TZR), Freie Universität Berlin, 14163 Berlin, Germany.
ORCID: 0000-0002-1998-4033

Maria P Ikonomopoulou (MP)

Madrid Institute of Advanced Studies in Food, Precision Nutrition & Aging Program, 28049 Madrid, Spain.
ORCID: 0000-0001-7739-080X

Florence Jungo (F)

SIB Swiss Institute of Bioinformatics, Swiss-Prot Group, 1211 Geneva, Switzerland.
ORCID: 0000-0002-7456-8390

Pascale Marchot (P)

Laboratory Architecture et Fonction des Macromolécules Biologiques, Aix-Marseille University, Centre National de la Recherche Scientifique, Faculté des Sciences, Campus Luminy, 13288 Marseille, France.
ORCID: 0000-0003-0630-0541

Tarcisio Mendes de Farias (TM)

Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.
SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
ORCID: 0000-0002-3175-5372

Maria Vittoria Modica (MV)

Department of Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, 00198 Rome, Italy.
ORCID: 0000-0003-2532-6763

Yehu Moran (Y)

Department of Ecology, Evolution and Behavior, Alexander Silberman Institute of Life Sciences, Faculty of Science, The Hebrew University of Jerusalem, 9190401 Jerusalem, Israel.
ORCID: 0000-0001-9928-9294

Ayse Nalbantsoy (A)

Engineering Faculty, Bioengineering Department, Ege University, 35100 Bornova-Izmir, Turkey.
ORCID: 0000-0002-3852-1974

Jan Procházka (J)

Laboratory of Transgenic Models of Diseases, Institute of Molecular Genetics of the Czech Academy of Sciences, 252 50 Vestec, Czech Republic.
ORCID: 0000-0003-4675-8995

Andrea Tarallo (A)

Institute of Research on Terrestrial Ecosystems (IRET), National Research Council (CNR), 73100 Lecce, Italy.
ORCID: 0000-0002-2749-8588

Fiorella Tonello (F)

Neuroscience Institute, National Research Council (CNR), 35131 Padua, Italy.
ORCID: 0000-0001-8935-8938

Rui Vitorino (R)

Department of Medical Sciences, iBiMED, University of Aveiro, 3810-193 Aveiro, Portugal.
ORCID: 0000-0003-3636-5805

Mark Lawrence Zammit (ML)

Department of Clinical Pharmacology & Therapeutics, Faculty of Medicine & Surgery, University of Malta, 2090 Msida, Malta.
Malta National Poisons Centre, Malta Life Sciences Park, 3000 San Ġwann, Malta.
ORCID: 0000-0001-9202-1797

Agostinho Antunes (A)

CIIMAR/CIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, 4450-208 Porto, Portugal.
Department of Biology, Faculty of Sciences, University of Porto, 4169-007 Porto, Portugal.
ORCID: 0000-0002-1328-1732

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Classifications MeSH

questionsmedicales.fr › Eucaryotes › Animaux › Web of venom: exploration of big data...
questionsmedicales.fr › Facteurs biologiques › Toxines biologiques › Venins › Web of venom: exploration of big data...
questionsmedicales.fr › Sciences de l'information › Méthodologies informatiques › Systèmes informatiques › Réseaux de communication entre ordinateurs › Internet › Web of venom: exploration of big data...
questionsmedicales.fr › Sciences de l'information › Informatique › Biologie informatique › Web of venom: exploration of big data...
questionsmedicales.fr › Sciences de l'information › Informatique › Informatique médicale › Applications de l'informatique médicale › Systèmes d'information › Mégadonnées › Web of venom: exploration of big data...
questionsmedicales.fr › Sciences de l'information › Mémorisation et recherche des informations › Bases de données comme sujet › Bases de données factuelles › Web of venom: exploration of big data...