A Medical Decision Support Platform for Identifying Thrombospondin 1 in Non-alcoholic Fatty Liver Disease via Immuno-Infiltration Analysis.


Journal

Journal of visualized experiments : JoVE
ISSN: 1940-087X
Titre abrégé: J Vis Exp
Pays: United States
ID NLM: 101313252

Informations de publication

Date de publication:
30 Aug 2024
Historique:
medline: 17 9 2024
pubmed: 17 9 2024
entrez: 16 9 2024
Statut: epublish

Résumé

Non-alcoholic fatty liver disease (NAFLD) and myocardial infarction (MI) are two major health burdens with significant prevalence and mortality. This study aimed to explore the co-expressed genes to understand the relationship between NAFLD and MI and identify potential crucial biomarkers of NAFLD-related MI using bioinformatics and machine learning. Functional enrichment analysis was conducted, a co-protein-protein interaction (PPI) network diagram was constructed, and support vector machine-recursive feature elimination (SVM-RFE) and least absolute shrinkage and selection operator (LASSO) techniques were employed to identify one differentially expressed gene (DEG), Thrombospondin 1 (THBS1). THBS1 demonstrated strong performance in distinguishing NAFLD patients (AUC = 0.981) and MI patients (AUC = 0.900). Immuno-infiltration analysis revealed significantly lower CD8+ T cells and higher neutrophil levels in patients with NAFLD and MI. CD8+ T cells and neutrophils were effective in distinguishing NAFLD/MI from healthy controls. Correlation analysis showed that THBS1 was positively correlated with CCR (chemokine receptor), MHC class (major histocompatibility complex class), neutrophils, parainflammation, and Tfh (follicular helper T cells), and negatively correlated with CD8+ T cells, cytolytic activity, and TIL (tumor-infiltrating lymphocytes) in NAFLD and MI patients. THBS1 emerged as a novel biomarker for diagnosing NAFLD/MI in comparison to healthy controls. The results indicate that CD8+ T cells and neutrophils could serve as inflammatory immune features for differentiating patients with NAFLD/MI from healthy individuals.

Identifiants

pubmed: 39283128
doi: 10.3791/67328
doi:

Substances chimiques

Thrombospondin 1 0
thrombospondin-1, human 0
Biomarkers 0

Types de publication

Journal Article Video-Audio Media

Langues

eng

Sous-ensembles de citation

IM

Auteurs

Jianyu Huang (J)

Department of Geriatric Cardiology, General Hospital of Southern Theater Command; Guangzhou Key Laboratory of Cardiac Rehabilitation; Branch of National Clinical Research Center for Geriatric Diseases, Chinese PLA General Hospital.

Pengfei Li (P)

Department of Geriatric Cardiology, General Hospital of Southern Theater Command; The First School of Clinical Medicine, Southern Medical University.

Jianing Chi (J)

Department of Geriatric Cardiology, General Hospital of Southern Theater Command; The First School of Clinical Medicine, Southern Medical University.

Jiaman Hu (J)

Department of Geriatric Cardiology, General Hospital of Southern Theater Command.

Hua Cai (H)

Department of Geriatric Cardiology, General Hospital of Southern Theater Command.

Ningxia Wu (N)

Department of Geriatric Cardiology, General Hospital of Southern Theater Command.

Min Li (M)

Department of Geriatric Cardiology, General Hospital of Southern Theater Command.

Zhongqiu Lin (Z)

Department of Geriatric Cardiology, General Hospital of Southern Theater Command.

Yutong Ji (Y)

Department of Geriatric Cardiology, General Hospital of Southern Theater Command.

Jiajia Xu (J)

Department of Geriatric Cardiology, General Hospital of Southern Theater Command.

Peng Liu (P)

Zhujiang Hospital, Southern Medical University, Cardiovascular Department/The Second School of Clinical Medicine, Southern Medical University; 65473751@qq.com.

Senthil Kumar Jagatheesaperumal (SK)

Department of Electronics & Communication Engineering, Mepco Schlenk Engineering College.

Victor Hugo C de Albuquerque (VHC)

Department of Teleinformatics Engineering, Federal University of Ceará.

Lin Xu (L)

Department of Geriatric Cardiology, General Hospital of Southern Theater Command; Guangzhou Key Laboratory of Cardiac Rehabilitation; Branch of National Clinical Research Center for Geriatric Diseases, Chinese PLA General Hospital; The First School of Clinical Medicine, Southern Medical University; xxgnk_xlin@126.com.

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Classifications MeSH