Biophysical evidence that frostbite is triggered on nanocrystals of biogenic magnetite in garlic cloves (Allium sativum).
Journal
Communications biology
ISSN: 2399-3642
Titre abrégé: Commun Biol
Pays: England
ID NLM: 101719179
Informations de publication
Date de publication:
18 Sep 2024
18 Sep 2024
Historique:
received:
11
01
2024
accepted:
18
08
2024
medline:
18
9
2024
pubmed:
18
9
2024
entrez:
17
9
2024
Statut:
epublish
Résumé
Trace levels of biologically precipitated magnetite (Fe
Identifiants
pubmed: 39289530
doi: 10.1038/s42003-024-06749-7
pii: 10.1038/s42003-024-06749-7
doi:
Substances chimiques
Ferrosoferric Oxide
XM0M87F357
Magnetite Nanoparticles
0
Ice
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
1167Subventions
Organisme : MEXT | Japan Society for the Promotion of Science (JSPS)
ID : JP20K04304
Organisme : MEXT | Japan Society for the Promotion of Science (JSPS)
ID : JP23K03693
Informations de copyright
© 2024. The Author(s).
Références
Macdonald, F. A. et al. Calibrating the cryogenian. Science 327, 1241–1243 (2010).
pubmed: 20203045
doi: 10.1126/science.1183325
Fischer, A. G. in Climate in Earth History: Studies in Geophysics Vol. 9 (ed. National Research Council) 97–104 (The National Academies Press, 1982).
Rubinstein, C. V., Gerrienne, P., de la Puente, G. S., Astini, R. A. & Steemans, P. Early Middle Ordovician evidence for land plants in Argentina (eastern Gondwana). N. Phytol. 188, 365–369 (2010).
doi: 10.1111/j.1469-8137.2010.03433.x
Sakai, A. & Larcher, W. Frost Survival of Plants: Responses and Adaptation to Freezing Stress Vol. 62 (Springer, Berlin, Heidelberg, 1987).
Gunders, D. Wasted: How America is Losing up to 40 percent of its Food from Farm to Fork to Landfill. Natural Resources Defense Council Issue Paper IP, 12-06-12-0 (2012).
Gunders, D. et al. Wasted: How America is Losing Up to 40 Percent of Its Food from Farm to Fork to Landfill. 2nd edn. NRDC’s Original 2012 Report. Issue Paper IP 17-05-17-0 (Natural Resources Defense Council, 2017).
Hoshino, T., Odaira, M., Yoshida, M. & Tsuda, S. Physiological and biochemical significance of antifreeze substances in plants. J. Plant Res. 112, 255–261 (1999).
doi: 10.1007/PL00013875
Moore, E. B. & Molinero, V. Structural transformation in supercooled water controls the crystallization rate of ice. Nature 479, 506–508 (2011).
pubmed: 22113691
doi: 10.1038/nature10586
Lowenstam, H. A. & Weiner, S. On Biomineralization (Oxford University Press, 1989).
Marcolli, C., Nagare, B., Welti, A. & Lohmann, U. Ice nucleation efficiency of AGI: review and new insights. Atmos. Chem. Phys. 16, 8915–8937 (2016).
doi: 10.5194/acp-16-8915-2016
Cochet, N. & Widehem, P. Ice crystallization by Pseudomonas syringae. Appl. Microbiol. Biotechnol. 54, 153–161 (2000).
pubmed: 10968626
doi: 10.1007/s002530000377
Atkinson, J. D. et al. The importance of feldspar for ice nucleation by mineral dust in mixed-phase clouds. Nature 498, 355–358 (2013).
pubmed: 23760484
doi: 10.1038/nature12278
Kobayashi, A., Golash, H. N. & Kirschvink, J. L. A first test of the hypothesis of biogenic magnetite-based heterogeneous ice-crystal nucleation in cryopreservation. Cryobiology 72, 216–224 (2016).
pubmed: 27087604
doi: 10.1016/j.cryobiol.2016.04.003
Kobayashi, A. & Kirschvink, J. L. A ferromagnetic model for the action of electric and magnetic fields in cryopreservation. Cryobiology 68, 163–165 (2014).
pubmed: 24333152
doi: 10.1016/j.cryobiol.2013.12.002
Fuller, M., Goree, W. S. & Goodman, W. L. in Magnetite Biomineralization and Magnetoreception in Organisms: A New Biomagnetism Vol. 5 Topics in Geobiology (eds Kirschvink, J. L., Jones, D. S. & MacFadden, B. J.) 103–151 (Plenum Press, 1985).
Butler, R. F. & Banerjee, S. K. Theoretical single-domain size range in magnetite and titanomagnetite. J. Geophys. Res. 80, 4049–4058 (1975).
doi: 10.1029/JB080i029p04049
Kobayashi, A., Horikawa, M., Kirschvink, J. L. & Golash, H. N. Magnetic control of heterogeneous ice nucleation with nanophase magnetite: Biophysical and agricultural implications. Proc. Natl Acad. Sci. USA 115, 5383–5388 (2018).
pubmed: 29735681
pmcid: 6003474
doi: 10.1073/pnas.1800294115
Wowk, B. Electric and magnetic fields in cryopreservation. Cryobiology 64, 301–303 (2012). author reply 304–305.
pubmed: 22330639
doi: 10.1016/j.cryobiol.2012.02.003
Mann, S., Sparks, N. H., Walker, M. M. & Kirschvink, J. L. Ultrastructure, morphology and organization of biogenic magnetite from sockeye salmon, Oncorhynchus nerka: implications for magnetoreception. J. Exp. Biol. 140, 35–49 (1988).
pubmed: 3204335
doi: 10.1242/jeb.140.1.35
Kirschvink, J. L., Jones, D. S. & McFadden, B. J. Magnetite Biomineralization and Magnetoreception in Organisms: A New Biomagnetism Vol. 5 (Plenum Press, 1985).
Kirschvink, J. L., Kobayashi-Kirschvink, A. & Woodford, B. J. Magnetite biomineralization in the human brain. Proc. Natl Acad. Sci. USA 89, 7683–7687 (1992).
pubmed: 1502184
pmcid: 49775
doi: 10.1073/pnas.89.16.7683
Bazylinski, D. A. & Frankel, R. B. Magnetosome formation in prokaryotes. Nat. Rev. Microbiol. 2, 217–230 (2004).
pubmed: 15083157
doi: 10.1038/nrmicro842
Leao, P. et al. Magnetosome magnetite biomineralization in a flagellated protist: evidence for an early evolutionary origin for magnetoreception in eukaryotes. Environ. Microbiol. 22, 1495–1506 (2019).
pubmed: 31188524
doi: 10.1111/1462-2920.14711
Gajdardziska-Josifovska, M., McClean, R. G., Schofield, M. A., Sommer, C. V. & Kean, W. F. Discovery of nanocrystalline botanical magnetite. Eur. J. Mineral. 13, 863–870 (2001).
doi: 10.1127/0935-1221/2001/0013/0863
Chaffee, T. M., Kirschvink, J. L. & Kobayashi, A. in AGU Fall meeting 2015 GP51A-1308 (American Geophysical Union, San Francisco, CA, 2015).
Gorobets, Y., Gorobets, S., Gorobets, O., Magerman, A. & Sharai, I. Biogenic and anthropogenic magnetic nanoparticles in the phloem sieve tubes of plants: magnetic nanoparticles in plants. J. Microbiol. Biotechnol. Food Sci. 12, e5484 (2023).
doi: 10.55251/jmbfs.5484
James, C., Seignemartin, V. & James, S. J. The freezing and supercooling of garlic (Allium sativum L.). Int. J. Refrig. 32, 253–260 (2009).
doi: 10.1016/j.ijrefrig.2008.05.012
Rivlin, R. S. Historical perspective on the use of garlic. J. Nutr. 131, 951S–954S (2001).
pubmed: 11238795
doi: 10.1093/jn/131.3.951S
Petrovska, B. B. & Cekovska, S. Extracts from the history and medical properties of garlic. Pharmacogn. Rev. 4, 106–110 (2010).
pubmed: 22228949
pmcid: 3249897
doi: 10.4103/0973-7847.65321
Liu, K. et al. Janus effect of antifreeze proteins on ice nucleation. Proc. Natl Acad. Sci. USA 113, 14739–14744 (2016).
pubmed: 27930318
pmcid: 5187720
doi: 10.1073/pnas.1614379114
Kaplan, E. L. & Meier, P. Nonparametric estimation from incomplete observations. J. Am. Stat. Assoc. 53, 457–481 (1958).
doi: 10.1080/01621459.1958.10501452
Thompson, R. & Oldfield, F. Environmental Magnetism XII, Vol. 228 (Springer, Dordrecht, 1986).
Cisowski, S. Interacting vs. non-interacting single-domain behavior in natural and synthetic samples. Phys. Earth Planet. Int. 26, 56–62 (1981).
doi: 10.1016/0031-9201(81)90097-2
Diaz Ricci, J. C. & Kirschvink, J. L. Magnetic domain state and coercivity predictions for biogenic greigite (Fe
doi: 10.1029/92JB01290
Lowrie, W. & Fuller, M. On the alternating field demagnetization characteristics of multidomain thermoremanent magnetization in magnetite. J. Geophys. Res. 76, 6339–6349 (1971).
doi: 10.1029/JB076i026p06339
Johnson, H. P., Lowrie, W. & Kent, D. V. Stability of ARM in fine and course grained magnetite and maghemite particles. Geophys. J. R. Astron. Soc. 41, 1–10 (1975).
doi: 10.1111/j.1365-246X.1975.tb05480.x
Fuller, M. P., White, G. G. & Charman, A. The freezing characteristics of cauliflower curd. Ann. Appl. Biol. 125, 179–188 (1994).
doi: 10.1111/j.1744-7348.1994.tb04959.x
Holden, M. A., Campbell, J. M., Meldrum, F. C., Murray, B. J. & Christenson, H. K. Active sites for ice nucleation differ depending on nucleation mode. Proc. Natl Acad. Sci. USA 118, e2022859118 (2021).
pubmed: 33903239
pmcid: 8106315
doi: 10.1073/pnas.2022859118
Uemura, M. & Kamata, T. Role of intracellular compatible solutes in cold acclimation in plants (in Japanese). Cryobiol. Cryotechnol. 47, 49–50 (2001).
Steponkus, P. L. Role of the plasma membrane in freezing injury and cold acclimation. Annu. Rev. Plant Physiol. 35, 543–584 (1984).
doi: 10.1146/annurev.pp.35.060184.002551
Levitt, J. Responses of Plant to Environmental Stress: Water, Radiation, Salt and Other Stresses (Academic Press, 1980).
Pohl, A. et al. Magnetite-binding proteins from the magnetotactic bacterium Desulfamplus magnetovallimortis BW-1. Nanoscale 13, 20396–20400 (2021).
pubmed: 34860229
doi: 10.1039/D1NR04870H
Wisniewski, M. et al. in Plant Cold Hardiness: Gene Regulation and Genetic Engineering Vol. 15 (eds Li, P. H. & Palva, E. T.) 211–221 (Kluwer Academic/lenum Publishers, 2002).
Kirschvink, J. L. Uniform magnetic fields and double-wrapped coil systems: improved techniques for the design of biomagnetic experiments. Bioelectromagnetics 13, 401–411 (1992).
pubmed: 1445421
doi: 10.1002/bem.2250130507
Mann, L. K. Anatomy of the garlic bulb and factors affecting bulb development. Hilgardia 21, 194–251 (1952).
doi: 10.3733/hilg.v21n08p195
Murashige, T. & Skoog, F. A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiol. Plant. 15, 473–497 (1962).
doi: 10.1111/j.1399-3054.1962.tb08052.x
Kobayashi, A. et al. Experimental observation of magnetosome chain collapse in magnetotactic bacteria: sedimentological, paleomagnetic, and evolutionary implications. Earth Planet. Sci. Lett. 245, 538–550 (2006).
doi: 10.1016/j.epsl.2006.03.041
Kirschvink, J. L., Kopp, R. E., Raub, T. D., Baumgartner, C. T. & Holt, J. W. Rapid, precise, and high‐sensitivity acquisition of paleomagnetic and rock‐magnetic data: development of a low‐noise automatic sample changing system for superconducting rock magnetometers. Geochem. Geophys. Geosyst. 9, n/a-n/a (2008).
doi: 10.1029/2007GC001856
Butler, R. F. Paleomagnetism: Magnetic Domains to Geologic Terranes (Blackwell Scientific Publications, 1992).
Pearson, K. X. On the criterion that a given system of deviations from the probable in the case of a correlated system of variables is such that it can be reasonably supposed to have arisen from random sampling. Lond. Edinb. Dublin Philos. Mag. J. Sci. 50, 157–175 (1900).
doi: 10.1080/14786440009463897
Zimmermann, F. et al. Ice nucleation properties of the most abundant mineral dust phases. J. Geophys. Res.: Atmos. 113, D23204-1,11 (2008).
Kalbfleisch, J. D. & Prentice, R. L. The Statistical Analysis of Failure Time Data 2nd edn (John Wiley & Sons, 2002).
Karadeniz, P. G. & Ercan, I. Examining tests for comparing survival curves with right censored data. Stat. Transit. N. Ser. 18, 311–328 (2017).
Therneau, T. M. et al. A Package for Survival Analysis in R https://CRAN.R-project.org/package=survival (2023).
Therneau, T. M. & Grambsch, P. M. Modeling Survival Data: Extending the Cox Model. [Electronic Resource] (Springer, New York, 2000).
Kassambara, A. et al. Survminer: Drawing Survival Curves Using ‘ggplot2’ v. 2021-03-09 (GitHub, 2021).
Vali, G. Interpretation of freezing nucleation experiments: singular and stochastic; sites and surfaces. Atmos. Chem. Phys. 14, 5271–5294 (2014).
doi: 10.5194/acp-14-5271-2014
Fay, M. P. & Shaw, P. A. Exact and asymptotic weighted logrank tests for interval censored data: the interval R package. J. Stat. Softw. 36, i02 (2010).
pubmed: 25285054
pmcid: 4184046
doi: 10.18637/jss.v036.i02