Ilya M Flyamer

Affiliations

MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh, Crewe Road, Edinburgh, EH4 2XU, UK.

Publications (21)

Developmentally regulated

Development (Cambridge, England)

Avec: Iain Williamson , Lauren Kane , Paul S Devenney , Ilya M Flyamer , Eve Anderson , Fiona Kilanowski , Robert E Hill , Wendy A Bickmore , Laura A Lettice

Quantitative differences in TAD border strength underly the TAD hierarchy in Drosophila chromosomes.

Journal of cellular biochemistry

Avec: Artem V Luzhin , Ilya M Flyamer , Ekaterina E Khrameeva , Sergey V Ulianov , Sergey V Razin , Alexey A Gavrilov

Bioframe: Operations on genomic intervals in pandas dataframes.

Bioinformatics (Oxford, England)

Avec: Auteur inconnu , Nezar Abdennur , Geoffrey Fudenberg , Ilya M Flyamer , Aleksandra A Galitsyna , Anton Goloborodko , Maxim Imakaev , Sergey Venev

Bivalent promoter hypermethylation in cancer is linked to the H327me3/H3K4me3 ratio in embryonic stem cells.

BMC biology

Avec: Donnchadh S Dunican , Heidi K Mjoseng , Leanne Duthie , Ilya M Flyamer , Wendy A Bickmore , Richard R Meehan

Cooltools: Enabling high-resolution Hi-C analysis in Python.

PLoS computational biology

Avec: Auteur inconnu , Nezar Abdennur , Sameer Abraham , Geoffrey Fudenberg , Ilya M Flyamer , Aleksandra A Galitsyna , Anton Goloborodko , Maxim Imakaev , Betul A Oksuz , Sergey V Venev , Yao Xiao

Ultra-long-range interactions between active regulatory elements.

Genome research

Avec: Elias T Friman , Ilya M Flyamer , Davide Marenduzzo , Shelagh Boyle , Wendy A Bickmore

Pairtools: From sequencing data to chromosome contacts.

PLoS computational biology

Avec: Auteur inconnu , Nezar Abdennur , Geoffrey Fudenberg , Ilya M Flyamer , Aleksandra A Galitsyna , Anton Goloborodko , Maxim Imakaev , Sergey V Venev

Order and stochasticity in the folding of individual Drosophila genomes.

Nature communications

Avec: Sergey V Ulianov , Vlada V Zakharova , Aleksandra A Galitsyna , Pavel I Kos , Kirill E Polovnikov , Ilya M Flyamer , Elena A Mikhaleva , Ekaterina E Khrameeva , Diego Germini , Mariya D Logacheva , Alexey A Gavrilov , Alexander S Gorsky , Sergey K Nechaev , Mikhail S Gelfand , Yegor S Vassetzky , Alexander V Chertovich , Yuri Y Shevelyov , Sergey V Razin

DNA Methylation Directs Polycomb-Dependent 3D Genome Re-organization in Naive Pluripotency.

Cell reports

Avec: Katy McLaughlin , Ilya M Flyamer , John P Thomson , Heidi K Mjoseng , Ruchi Shukla , Iain Williamson , Graeme R Grimes , Robert S Illingworth , Ian R Adams , Sari Pennings , Richard R Meehan , Wendy A Bickmore

A central role for canonical PRC1 in shaping the 3D nuclear landscape.

Genes & development

Avec: Shelagh Boyle , Ilya M Flyamer , Iain Williamson , Dipta Sengupta , Wendy A Bickmore , Robert S Illingworth

Low Level of Expression of C-Terminally Truncated Human FUS Causes Extensive Changes in the Spinal Cord Transcriptome of Asymptomatic Transgenic Mice.

Neurochemical research

Avec: Ekaterina A Lysikova , Sergei Funikov , Alexander P Rezvykh , Kirill D Chaprov , Michail S Kukharsky , Aleksey Ustyugov , Alexey V Deykin , Ilya M Flyamer , Shelagh Boyle , Sergey O Bachurin , Natalia Ninkina , Vladimir L Buchman

Nuclear lamina integrity is required for proper spatial organization of chromatin in Drosophila.

Nature communications

Avec: Sergey V Ulianov , Semen A Doronin , Ekaterina E Khrameeva , Pavel I Kos , Artem V Luzhin , Sergei S Starikov , Aleksandra A Galitsyna , Valentina V Nenasheva , Artem A Ilyin , Ilya M Flyamer , Elena A Mikhaleva , Mariya D Logacheva , Mikhail S Gelfand , Alexander V Chertovich , Alexey A Gavrilov , Sergey V Razin , Yuri Y Shevelyov

C-TALE, a new cost-effective method for targeted enrichment of Hi-C/3C-seq libraries.

Methods (San Diego, Calif.)

Avec: Arkadiy K Golov , Sergey V Ulianov , Artem V Luzhin , Ekaterina P Kalabusheva , Omar L Kantidze , Ilya M Flyamer , Sergey V Razin , Alexey A Gavrilov

Nuclear organisation and replication timing are coupled through RIF1-PP1 interaction.

Nature communications

Avec: Stefano Gnan , Ilya M Flyamer , Kyle N Klein , Eleonora Castelli , Alexander Rapp , Andreas Maiser , Naiming Chen , Patrick Weber , Elin Enervald , M Cristina Cardoso , Wendy A Bickmore , David M Gilbert , Sara C B Buonomo

Cohesin is required for long-range enhancer action at the Shh locus.

Nature structural & molecular biology

Avec: Lauren Kane , Iain Williamson , Ilya M Flyamer , Yatendra Kumar , Robert E Hill , Laura A Lettice , Wendy A Bickmore

Coolpup.py: versatile pile-up analysis of Hi-C data.

Bioinformatics (Oxford, England)

Avec: Ilya M Flyamer , Robert S Illingworth , Wendy A Bickmore

From bedside to bench: regulation of host factors in SARS-CoV-2 infection.

Experimental & molecular medicine

Avec: Samantha Y Q Ong , Ilya M Flyamer , Wendy A Bickmore , Simon C Biddie

MCM complexes are barriers that restrict cohesin-mediated loop extrusion.

Nature

Avec: Bart J H Dequeker , Matthias J Scherr , Hugo B Brandão , Johanna Gassler , Sean Powell , Imre Gaspar , Ilya M Flyamer , Aleksandar Lalic , Wen Tang , Roman Stocsits , Iain F Davidson , Jan-Michael Peters , Karl E Duderstadt , Leonid A Mirny , Kikuë Tachibana

Trisomies Reorganize Human 3D Genome.

International journal of molecular sciences

Avec: Irina V Zhegalova , Petr A Vasiluev , Ilya M Flyamer , Anastasia S Shtompel , Eugene Glazyrina , Nadezda Shilova , Marina Minzhenkova , Zhanna Markova , Natalia V Petrova , Erdem B Dashinimaev , Sergey V Razin , Sergey V Ulianov

Pairtools: from sequencing data to chromosome contacts.

bioRxiv : the preprint server for biology

Avec: Auteur inconnu , Nezar Abdennur , Geoffrey Fudenberg , Ilya M Flyamer , Aleksandra A Galitsyna , Anton Goloborodko , Maxim Imakaev , Sergey V Venev

Systematic assessment of ISWI subunits shows that NURF creates local accessibility for CTCF.

Nature genetics

Avec: Mario Iurlaro , Francesca Masoni , Ilya M Flyamer , Christiane Wirbelauer , Murat Iskar , Lukas Burger , Luca Giorgetti , Dirk Schübeler

Réseau de co-auteurs

Wendy A Bickmore 9 collaborations

Aleksandra A Galitsyna 6 collaborations

Sergey V Ulianov 5 collaborations

Sergey V Razin 5 collaborations

Iain Williamson 4 collaborations

Alexey A Gavrilov 4 collaborations

None None 4 collaborations

Nezar Abdennur 4 collaborations

Geoffrey Fudenberg 4 collaborations

Anton Goloborodko 4 collaborations

Maxim Imakaev 4 collaborations

Artem V Luzhin 3 collaborations

Ekaterina E Khrameeva 3 collaborations

Sergey V Venev 3 collaborations

Shelagh Boyle 3 collaborations

Robert S Illingworth 3 collaborations

Lauren Kane 2 collaborations

Robert E Hill 2 collaborations

Laura A Lettice 2 collaborations

Heidi K Mjoseng 2 collaborations

Richard R Meehan 2 collaborations

Pavel I Kos 2 collaborations

Elena A Mikhaleva 2 collaborations

Mariya D Logacheva 2 collaborations

Mikhail S Gelfand 2 collaborations

Alexander V Chertovich 2 collaborations

Yuri Y Shevelyov 2 collaborations

Paul S Devenney 1 collaboration

Eve Anderson 1 collaboration

Fiona Kilanowski 1 collaboration

Sergey Venev 1 collaboration

Donnchadh S Dunican 1 collaboration

Leanne Duthie 1 collaboration

Sameer Abraham 1 collaboration

Betul A Oksuz 1 collaboration

Yao Xiao 1 collaboration

Elias T Friman 1 collaboration

Davide Marenduzzo 1 collaboration

Vlada V Zakharova 1 collaboration

Kirill E Polovnikov 1 collaboration

Diego Germini 1 collaboration

Alexander S Gorsky 1 collaboration

Sergey K Nechaev 1 collaboration

Yegor S Vassetzky 1 collaboration

Katy McLaughlin 1 collaboration

John P Thomson 1 collaboration

Ruchi Shukla 1 collaboration

Graeme R Grimes 1 collaboration

Ian R Adams 1 collaboration

Sari Pennings 1 collaboration

Dipta Sengupta 1 collaboration

Ekaterina A Lysikova 1 collaboration

Sergei Funikov 1 collaboration

Alexander P Rezvykh 1 collaboration

Kirill D Chaprov 1 collaboration

Michail S Kukharsky 1 collaboration

Aleksey Ustyugov 1 collaboration

Alexey V Deykin 1 collaboration

Sergey O Bachurin 1 collaboration

Natalia Ninkina 1 collaboration

Vladimir L Buchman 1 collaboration

Semen A Doronin 1 collaboration

Sergei S Starikov 1 collaboration

Valentina V Nenasheva 1 collaboration

Artem A Ilyin 1 collaboration

Arkadiy K Golov 1 collaboration

Ekaterina P Kalabusheva 1 collaboration

Omar L Kantidze 1 collaboration

Stefano Gnan 1 collaboration

Kyle N Klein 1 collaboration

Eleonora Castelli 1 collaboration

Alexander Rapp 1 collaboration

Andreas Maiser 1 collaboration

Naiming Chen 1 collaboration

Patrick Weber 1 collaboration

Elin Enervald 1 collaboration

M Cristina Cardoso 1 collaboration

David M Gilbert 1 collaboration

Sara C B Buonomo 1 collaboration

Yatendra Kumar 1 collaboration

Samantha Y Q Ong 1 collaboration

Simon C Biddie 1 collaboration

Bart J H Dequeker 1 collaboration

Matthias J Scherr 1 collaboration

Hugo B Brandão 1 collaboration

Johanna Gassler 1 collaboration

Sean Powell 1 collaboration

Imre Gaspar 1 collaboration

Aleksandar Lalic 1 collaboration

Wen Tang 1 collaboration

Roman Stocsits 1 collaboration

Iain F Davidson 1 collaboration

Jan-Michael Peters 1 collaboration

Karl E Duderstadt 1 collaboration

Leonid A Mirny 1 collaboration

Kikuë Tachibana 1 collaboration

Irina V Zhegalova 1 collaboration

Petr A Vasiluev 1 collaboration

Anastasia S Shtompel 1 collaboration

Eugene Glazyrina 1 collaboration

Nadezda Shilova 1 collaboration

Marina Minzhenkova 1 collaboration

Zhanna Markova 1 collaboration

Natalia V Petrova 1 collaboration

Erdem B Dashinimaev 1 collaboration

Mario Iurlaro 1 collaboration

Francesca Masoni 1 collaboration

Christiane Wirbelauer 1 collaboration

Murat Iskar 1 collaboration

Lukas Burger 1 collaboration

Luca Giorgetti 1 collaboration

Dirk Schübeler 1 collaboration