Jacob O Kitzman

Affiliations

Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America.

Publications (12)

Elevated exopolysaccharide levels in Pseudomonas aeruginosa flagellar mutants have implications for biofilm growth and chronic infections.

PLoS genetics

Avec: Joe J Harrison , Henrik Almblad , Yasuhiko Irie , Daniel J Wolter , Heather C Eggleston , Trevor E Randall , Jacob O Kitzman , Bethany Stackhouse , Julia C Emerson , Sharon Mcnamara , Tyler J Larsen , Jay Shendure , Lucas R Hoffman , Daniel J Wozniak , Matthew R Parsek

Quantification, Dynamic Visualization, and Validation of Bias in ATAC-Seq Data with ataqv.

Cell systems

Avec: Peter Orchard , Yasuhiro Kyono , John Hensley , Jacob O Kitzman , Stephen C J Parker

Gene amplification acts as a molecular foothold to facilitate cross-species adaptation and evasion of multiple antiviral pathways.

Virus evolution

Avec: Shefali Banerjee , Cathy Smith , Adam P Geballe , Stefan Rothenburg , Jacob O Kitzman , Greg Brennan

Benchmarking splice variant prediction algorithms using massively parallel splicing assays.

bioRxiv : the preprint server for biology

Avec: Cathy Smith , Jacob O Kitzman

A maternal germline mutator phenotype in a family affected by heritable colorectal cancer.

Genetics

Avec: Candice L Young , Annabel C Beichman , David Mas-Ponte , Shelby L Hemker , Luke Zhu , Jacob O Kitzman , Brian H Shirts , Kelley Harris

CRISPR knockout screen implicates three genes in lysosome function.

Scientific reports

Avec: Guy M Lenk , Young N Park , Rosemary Lemons , Emma Flynn , Margaret Plank , Christen M Frei , Michael J Davis , Brian Gregorka , Joel A Swanson , Miriam H Meisler , Jacob O Kitzman

Genomic annotation of disease-associated variants reveals shared functional contexts.

Diabetologia

Avec: Yasuhiro Kyono , Jacob O Kitzman , Stephen C J Parker

Massively parallel functional testing of MSH2 missense variants conferring Lynch syndrome risk.

American journal of human genetics

Avec: Xiaoyan Jia , Bala Bharathi Burugula , Victor Chen , Rosemary M Lemons , Sajini Jayakody , Mariam Maksutova , Jacob O Kitzman

Variable patterns of retrotransposition in different HeLa strains provide mechanistic insights into SINE RNA mobilization processes.

Nucleic acids research

Avec: John B Moldovan , Huira C Kopera , Ying Liu , Marta Garcia-Canadas , Purificacion Catalina , Paola E Leone , Laura Sanchez , Jacob O Kitzman , Jeffrey M Kidd , Jose Luis Garcia-Perez , John V Moran

Chromatin information content landscapes inform transcription factor and DNA interactions.

Nature communications

Avec: Ricardo D'Oliveira Albanus , Yasuhiro Kyono , John Hensley , Arushi Varshney , Peter Orchard , Jacob O Kitzman , Stephen C J Parker

Comprehensive Identification of Pathogenic Gene Variants in Patients With Neuroendocrine Disorders.

The Journal of clinical endocrinology and metabolism

Avec: Sebastian Alexis Vishnopolska , Maria Florencia Mercogliano , Maria Andrea Camilletti , Amanda Helen Mortensen , Debora Braslavsky , Ana Keselman , Ignacio Bergadá , Federico Olivieri , Lucas Miranda , Roxana Marino , Pablo Ramírez , Natalia Pérez Garrido , Helen Patiño Mejia , Marta Ciaccio , Maria Isabel Di Palma , Alicia Belgorosky , Marcelo Adrian Martí , Jacob Otto Kitzman , Sally Ann Camper , Maria Ines Pérez-Millán

SOX10-regulated promoter use defines isoform-specific gene expression in Schwann cells.

BMC genomics

Avec: Elizabeth A Fogarty , Jacob O Kitzman , Anthony Antonellis

Réseau de co-auteurs

Yasuhiro Kyono 3 collaborations

Stephen C J Parker 3 collaborations

Peter Orchard 2 collaborations

John Hensley 2 collaborations

Cathy Smith 2 collaborations

Joe J Harrison 1 collaboration

Henrik Almblad 1 collaboration

Yasuhiko Irie 1 collaboration

Daniel J Wolter 1 collaboration

Heather C Eggleston 1 collaboration

Trevor E Randall 1 collaboration

Bethany Stackhouse 1 collaboration

Julia C Emerson 1 collaboration

Sharon Mcnamara 1 collaboration

Tyler J Larsen 1 collaboration

Jay Shendure 1 collaboration

Lucas R Hoffman 1 collaboration

Daniel J Wozniak 1 collaboration

Matthew R Parsek 1 collaboration

Shefali Banerjee 1 collaboration

Adam P Geballe 1 collaboration

Stefan Rothenburg 1 collaboration

Greg Brennan 1 collaboration

Candice L Young 1 collaboration

Annabel C Beichman 1 collaboration

David Mas-Ponte 1 collaboration

Shelby L Hemker 1 collaboration

Luke Zhu 1 collaboration

Brian H Shirts 1 collaboration

Kelley Harris 1 collaboration

Guy M Lenk 1 collaboration

Young N Park 1 collaboration

Rosemary Lemons 1 collaboration

Emma Flynn 1 collaboration

Margaret Plank 1 collaboration

Christen M Frei 1 collaboration

Michael J Davis 1 collaboration

Brian Gregorka 1 collaboration

Joel A Swanson 1 collaboration

Miriam H Meisler 1 collaboration

Xiaoyan Jia 1 collaboration

Bala Bharathi Burugula 1 collaboration

Victor Chen 1 collaboration

Rosemary M Lemons 1 collaboration

Sajini Jayakody 1 collaboration

Mariam Maksutova 1 collaboration

John B Moldovan 1 collaboration

Huira C Kopera 1 collaboration

Ying Liu 1 collaboration

Marta Garcia-Canadas 1 collaboration

Purificacion Catalina 1 collaboration

Paola E Leone 1 collaboration

Laura Sanchez 1 collaboration

Jeffrey M Kidd 1 collaboration

Jose Luis Garcia-Perez 1 collaboration

John V Moran 1 collaboration

Ricardo D'Oliveira Albanus 1 collaboration

Arushi Varshney 1 collaboration

Sebastian Alexis Vishnopolska 1 collaboration

Maria Florencia Mercogliano 1 collaboration

Maria Andrea Camilletti 1 collaboration

Amanda Helen Mortensen 1 collaboration

Debora Braslavsky 1 collaboration

Ana Keselman 1 collaboration

Ignacio Bergadá 1 collaboration

Federico Olivieri 1 collaboration

Lucas Miranda 1 collaboration

Roxana Marino 1 collaboration

Pablo Ramírez 1 collaboration

Natalia Pérez Garrido 1 collaboration

Helen Patiño Mejia 1 collaboration

Marta Ciaccio 1 collaboration

Maria Isabel Di Palma 1 collaboration

Alicia Belgorosky 1 collaboration

Marcelo Adrian Martí 1 collaboration

Jacob Otto Kitzman 1 collaboration

Sally Ann Camper 1 collaboration

Maria Ines Pérez-Millán 1 collaboration

Elizabeth A Fogarty 1 collaboration

Anthony Antonellis 1 collaboration