Jane Hawkey

Affiliations

Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne, Australia.

Publications (23)

Silent spread of mobile colistin resistance gene mcr-9.1 on IncHI2 'superplasmids' in clinical carbapenem-resistant Enterobacterales.

Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases

Avec: Nenad Macesic , Luke V Blakeway , James D Stewart , Jane Hawkey , Kelly L Wyres , Louise M Judd , Ryan R Wick , Adam W Jenney , Kathryn E Holt , Anton Y Peleg

Pandora: nucleotide-resolution bacterial pan-genomics with reference graphs.

Genome biology

Avec: Rachel M Colquhoun , Michael B Hall , Leandro Lima , Leah W Roberts , Kerri M Malone , Martin Hunt , Brice Letcher , Jane Hawkey , Sophie George , Louise Pankhurst , Zamin Iqbal

Bactabolize is a tool for high-throughput generation of bacterial strain-specific metabolic models.

eLife

Avec: Ben Vezina , Stephen C Watts , Jane Hawkey , Helena B Cooper , Louise M Judd , Adam W J Jenney , Jonathan M Monk , Kathryn E Holt , Kelly L Wyres

Impact of insertion sequences on convergent evolution of Shigella species.

PLoS genetics

Avec: Jane Hawkey , Jonathan M Monk , Helen Billman-Jacobe , Bernhard Palsson , Kathryn E Holt

Z/I1 Hybrid Virulence Plasmids Carrying Antimicrobial Resistance genes in

Microorganisms

Avec: Ethan R Wyrsch , Jane Hawkey , Louise M Judd , Ruth Haites , Kathryn E Holt , Steven P Djordjevic , Helen Billman-Jacobe

Linear plasmids in

Microbial genomics

Avec: Jane Hawkey , Hugh Cottingham , Alex Tokolyi , Ryan R Wick , Louise M Judd , Louise Cerdeira , Doroti de Oliveira Garcia , Kelly L Wyres , Kathryn E Holt

High-level nitrofurantoin resistance in a clinical isolate of

mSystems

Avec: Maytham Hussein , Zetao Sun , Jane Hawkey , Rafah Allobawi , Louise M Judd , Vincenzo Carbone , Rajnikant Sharma , Varsha Thombare , Mark Baker , Gauri G Rao , Jian Li , Kathryn E Holt , Tony Velkov

Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198.

Microbial genomics

Avec: Jane Hawkey , Simon Le Hello , Benoît Doublet , Sophie A Granier , Rene S Hendriksen , W Florian Fricke , Pieter-Jan Ceyssens , Camille Gomart , Helen Billman-Jacobe , Kathryn E Holt , François-Xavier Weill

Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307.

The Journal of antimicrobial chemotherapy

Avec: Kelly L Wyres , Jane Hawkey , Marit A K Hetland , Aasmund Fostervold , Ryan R Wick , Louise M Judd , Mohammad Hamidian , Benjamin P Howden , Iren H Löhr , Kathryn E Holt

Trycycler: consensus long-read assemblies for bacterial genomes.

Genome biology

Avec: Ryan R Wick , Louise M Judd , Louise T Cerdeira , Jane Hawkey , Guillaume Méric , Ben Vezina , Kelly L Wyres , Kathryn E Holt

Microbial genomics

Avec: Kimberley R Dainty , Jane Hawkey , Louise M Judd , Etiene C Pacidônio , Johanna M Duyvestyn , Daniela S Gonçalves , Silk Yu Lin , Tanya B O'Donnell , Scott L O'Neill , Cameron P Simmons , Kathryn E Holt , Heather A Flores

Attributable mortality and excess length of stay associated with third-generation cephalosporin-resistant Enterobacterales bloodstream infections: a prospective cohort study in Suva, Fiji.

Journal of global antimicrobial resistance

Avec: Michael J Loftus , Tracey E M W Young-Sharma , Sue J Lee , Shitanjni Wati , Gnei Z Badoordeen , Luke V Blakeway , Sally M H Byers , Allen C Cheng , Ben S Cooper , Hugh Cottingham , Adam W J Jenney , Jane Hawkey , Nenad Macesic , Ravi Naidu , Amitesh Prasad , Vinita Prasad , Litia Tudravu , Timoci Vakatawa , Elke van Gorp , Jessica A Wisniewski , Eric Rafai , Anton Y Peleg , Andrew J Stewardson

A Shigella sonnei clone with extensive drug resistance associated with waterborne outbreaks in China.

Nature communications

Avec: Shaofu Qiu , Kangkang Liu , Chaojie Yang , Ying Xiang , Kaiyuan Min , Kunpeng Zhu , Hongbo Liu , Xinying Du , Mingjuan Yang , Ligui Wang , Yong Sun , Haijian Zhou , Muti Mahe , Jiayong Zhao , Shijun Li , Deshan Yu , Jane Hawkey , Kathryn E Holt , Stephen Baker , Juntao Yang , Xuebin Xu , Hongbin Song

Genomic investigation of multispecies and multivariant

Infection control and hospital epidemiology

Avec: Nenad Macesic , Adelaide Dennis , Jane Hawkey , Ben Vezina , Jessica A Wisniewski , Hugh Cottingham , Luke V Blakeway , Taylor Harshegyi , Katherine Pragastis , Gnei Zweena Badoordeen , Pauline Bass , Andrew J Stewardson , Amanda Dennison , Denis W Spelman , Adam W J Jenney , Anton Y Peleg

Molecular characterization and descriptive analysis of carbapenemase-producing Gram-negative rod infections in Bogota, Colombia.

Microbiology spectrum

Avec: Elsa D Ibáñez-Prada , Ingrid G Bustos , Enrique Gamboa-Silva , Diego F Josa , Lina Mendez , Yuli V Fuentes , Cristian C Serrano-Mayorga , Oscar Baron , Alejandra Ruiz-Cuartas , Edwin Silva , Louise M Judd , Taylor Harshegyi , Hector F Africano , Juan Urrego-Reyes , Claudia C Beltran , Sebastian Medina , Rafael Leal , Andrew J Stewardson , Kelly L Wyres , Jane Hawkey , Luis Felipe Reyes

Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei.

Nature communications

Avec: Jane Hawkey , Kalani Paranagama , Kate S Baker , Rebecca J Bengtsson , François-Xavier Weill , Nicholas R Thomson , Stephen Baker , Louise Cerdeira , Zamin Iqbal , Martin Hunt , Danielle J Ingle , Timothy J Dallman , Claire Jenkins , Deborah A Williamson , Kathryn E Holt

Evolution of a clade of Acinetobacter baumannii global clone 1, lineage 1 via acquisition of carbapenem- and aminoglycoside-resistance genes and dispersion of ISAba1.

Microbial genomics

Avec: Mohammad Hamidian , Jane Hawkey , Ryan Wick , Kathryn E Holt , Ruth M Hall

A curated collection of

Genome research

Avec: Jane Hawkey , Ben Vezina , Jonathan M Monk , Louise M Judd , Taylor Harshegyi , Sebastián López-Fernández , Carla Rodrigues , Sylvain Brisse , Kathryn E Holt , Kelly L Wyres

Epidemiology and genomic analysis of Klebsiella oxytoca from a single hospital network in Australia.

BMC infectious diseases

Avec: James Stewart , Louise M Judd , Adam Jenney , Kathryn E Holt , Kelly L Wyres , Jane Hawkey

DksA is a conserved master regulator of stress response in Acinetobacter baumannii.

Nucleic acids research

Avec: Ram P Maharjan , Geraldine J Sullivan , Felise G Adams , Bhumika S Shah , Jane Hawkey , Natasha Delgado , Lucie Semenec , Hue Dinh , Liping Li , Francesca L Short , Julian Parkhill , Ian T Paulsen , Lars Barquist , Bart A Eijkelkamp , Amy K Cain

Genomic dissection of endemic carbapenem resistance reveals metallo-beta-lactamase dissemination through clonal, plasmid and integron transfer.

Nature communications

Avec: Nenad Macesic , Jane Hawkey , Ben Vezina , Jessica A Wisniewski , Hugh Cottingham , Luke V Blakeway , Taylor Harshegyi , Katherine Pragastis , Gnei Zweena Badoordeen , Amanda Dennison , Denis W Spelman , Adam W J Jenney , Anton Y Peleg

A validated pangenome-scale metabolic model for the

Microbial genomics

Avec: Helena B Cooper , Ben Vezina , Jane Hawkey , Virginie Passet , Sebastián López-Fernández , Jonathan M Monk , Sylvain Brisse , Kathryn E Holt , Kelly L Wyres

Clinical and laboratory-induced colistin-resistance mechanisms in Acinetobacter baumannii.

Microbial genomics

Avec: Christine J Boinett , Amy K Cain , Jane Hawkey , Nhu Tran Do Hoang , Nhu Nguyen Thi Khanh , Duy Pham Thanh , Janina Dordel , James I Campbell , Nguyen Phu Huong Lan , Matthew Mayho , Gemma C Langridge , James Hadfield , Nguyen Van Vinh Chau , Guy E Thwaites , Julian Parkhill , Nicholas R Thomson , Kathryn E Holt , Stephen Baker

Réseau de co-auteurs

Kathryn E Holt 17 collaborations

Louise M Judd 11 collaborations

Kelly L Wyres 9 collaborations

Ben Vezina 6 collaborations

Nenad Macesic 4 collaborations

Luke V Blakeway 4 collaborations

Ryan R Wick 4 collaborations

Anton Y Peleg 4 collaborations

Adam W J Jenney 4 collaborations

Jonathan M Monk 4 collaborations

Hugh Cottingham 4 collaborations

Taylor Harshegyi 4 collaborations

Helen Billman-Jacobe 3 collaborations

Jessica A Wisniewski 3 collaborations

Andrew J Stewardson 3 collaborations

Stephen Baker 3 collaborations

Martin Hunt 2 collaborations

Zamin Iqbal 2 collaborations

Helena B Cooper 2 collaborations

Louise Cerdeira 2 collaborations

François-Xavier Weill 2 collaborations

Mohammad Hamidian 2 collaborations

Katherine Pragastis 2 collaborations

Gnei Zweena Badoordeen 2 collaborations

Amanda Dennison 2 collaborations

Denis W Spelman 2 collaborations

Nicholas R Thomson 2 collaborations

Sebastián López-Fernández 2 collaborations

Sylvain Brisse 2 collaborations

Julian Parkhill 2 collaborations

Amy K Cain 2 collaborations

James D Stewart 1 collaboration

Adam W Jenney 1 collaboration

Rachel M Colquhoun 1 collaboration

Michael B Hall 1 collaboration

Leandro Lima 1 collaboration

Leah W Roberts 1 collaboration

Kerri M Malone 1 collaboration

Brice Letcher 1 collaboration

Sophie George 1 collaboration

Louise Pankhurst 1 collaboration

Stephen C Watts 1 collaboration

Bernhard Palsson 1 collaboration

Ethan R Wyrsch 1 collaboration

Ruth Haites 1 collaboration

Steven P Djordjevic 1 collaboration

Alex Tokolyi 1 collaboration

Doroti de Oliveira Garcia 1 collaboration

Maytham Hussein 1 collaboration

Zetao Sun 1 collaboration

Rafah Allobawi 1 collaboration

Vincenzo Carbone 1 collaboration

Rajnikant Sharma 1 collaboration

Varsha Thombare 1 collaboration

Mark Baker 1 collaboration

Gauri G Rao 1 collaboration

Jian Li 1 collaboration

Tony Velkov 1 collaboration

Simon Le Hello 1 collaboration

Benoît Doublet 1 collaboration

Sophie A Granier 1 collaboration

Rene S Hendriksen 1 collaboration

W Florian Fricke 1 collaboration

Pieter-Jan Ceyssens 1 collaboration

Camille Gomart 1 collaboration

Marit A K Hetland 1 collaboration

Aasmund Fostervold 1 collaboration

Benjamin P Howden 1 collaboration

Iren H Löhr 1 collaboration

Louise T Cerdeira 1 collaboration

Guillaume Méric 1 collaboration

Kimberley R Dainty 1 collaboration

Etiene C Pacidônio 1 collaboration

Johanna M Duyvestyn 1 collaboration

Daniela S Gonçalves 1 collaboration

Silk Yu Lin 1 collaboration

Tanya B O'Donnell 1 collaboration

Scott L O'Neill 1 collaboration

Cameron P Simmons 1 collaboration

Heather A Flores 1 collaboration

Michael J Loftus 1 collaboration

Tracey E M W Young-Sharma 1 collaboration

Sue J Lee 1 collaboration

Shitanjni Wati 1 collaboration

Gnei Z Badoordeen 1 collaboration

Sally M H Byers 1 collaboration

Allen C Cheng 1 collaboration

Ben S Cooper 1 collaboration

Ravi Naidu 1 collaboration

Amitesh Prasad 1 collaboration

Vinita Prasad 1 collaboration

Litia Tudravu 1 collaboration

Timoci Vakatawa 1 collaboration

Elke van Gorp 1 collaboration

Eric Rafai 1 collaboration

Shaofu Qiu 1 collaboration

Kangkang Liu 1 collaboration

Chaojie Yang 1 collaboration

Ying Xiang 1 collaboration

Kaiyuan Min 1 collaboration

Kunpeng Zhu 1 collaboration

Hongbo Liu 1 collaboration

Xinying Du 1 collaboration

Mingjuan Yang 1 collaboration

Ligui Wang 1 collaboration

Yong Sun 1 collaboration

Haijian Zhou 1 collaboration

Muti Mahe 1 collaboration

Jiayong Zhao 1 collaboration

Shijun Li 1 collaboration

Deshan Yu 1 collaboration

Juntao Yang 1 collaboration

Xuebin Xu 1 collaboration

Hongbin Song 1 collaboration

Adelaide Dennis 1 collaboration

Pauline Bass 1 collaboration

Elsa D Ibáñez-Prada 1 collaboration

Ingrid G Bustos 1 collaboration

Enrique Gamboa-Silva 1 collaboration

Diego F Josa 1 collaboration

Lina Mendez 1 collaboration

Yuli V Fuentes 1 collaboration

Cristian C Serrano-Mayorga 1 collaboration

Oscar Baron 1 collaboration

Alejandra Ruiz-Cuartas 1 collaboration

Edwin Silva 1 collaboration

Hector F Africano 1 collaboration

Juan Urrego-Reyes 1 collaboration

Claudia C Beltran 1 collaboration

Sebastian Medina 1 collaboration

Rafael Leal 1 collaboration

Luis Felipe Reyes 1 collaboration

Kalani Paranagama 1 collaboration

Kate S Baker 1 collaboration

Rebecca J Bengtsson 1 collaboration

Danielle J Ingle 1 collaboration

Timothy J Dallman 1 collaboration

Claire Jenkins 1 collaboration

Deborah A Williamson 1 collaboration

Ryan Wick 1 collaboration

Ruth M Hall 1 collaboration

Carla Rodrigues 1 collaboration

James Stewart 1 collaboration

Adam Jenney 1 collaboration

Ram P Maharjan 1 collaboration

Geraldine J Sullivan 1 collaboration

Felise G Adams 1 collaboration

Bhumika S Shah 1 collaboration

Natasha Delgado 1 collaboration

Lucie Semenec 1 collaboration

Hue Dinh 1 collaboration

Liping Li 1 collaboration

Francesca L Short 1 collaboration

Ian T Paulsen 1 collaboration

Lars Barquist 1 collaboration

Bart A Eijkelkamp 1 collaboration

Virginie Passet 1 collaboration

Christine J Boinett 1 collaboration

Nhu Tran Do Hoang 1 collaboration

Nhu Nguyen Thi Khanh 1 collaboration

Duy Pham Thanh 1 collaboration

Janina Dordel 1 collaboration

James I Campbell 1 collaboration

Nguyen Phu Huong Lan 1 collaboration

Matthew Mayho 1 collaboration

Gemma C Langridge 1 collaboration

James Hadfield 1 collaboration

Nguyen Van Vinh Chau 1 collaboration

Guy E Thwaites 1 collaboration