K Popadin

Affiliations

Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, Lausanne, Switzerland.
Swiss Institute of Bioinformatics (SIB), Lausanne, Switzerland.
School of Life Science, Immanuel Kant Federal Baltic University, Kaliningrad, Russia.

ORCID: 0000-0002-2117-6086

Publications (12)

Mitochondrial Pseudogenes Suggest Repeated Inter-Species Hybridization among Direct Human Ancestors.

Genes

Avec: Konstantin Popadin , Konstantin Gunbin , Leonid Peshkin , Sofia Annis , Zoe Fleischmann , Melissa Franco , Yevgenya Kraytsberg , Natalya Markuzon , Rebecca R Ackermann , Konstantin Khrapko

Dynamics of the most common pathogenic mtDNA variant m.3243A > G demonstrate frequency-dependency in blood and positive selection in the germline.

Human molecular genetics

Avec: Melissa Franco , Sarah J Pickett , Zoe Fleischmann , Mark Khrapko , Auden Cote-L'Heureux , Dylan Aidlen , David Stein , Natasha Markuzon , Konstantin Popadin , Maxim Braverman , Dori C Woods , Jonathan L Tilly , Doug M Turnbull , Konstantin Khrapko

NeMu: a comprehensive pipeline for accurate reconstruction of neutral mutation spectra from evolutionary data.

Nucleic acids research

Avec: Bogdan Efimenko , Konstantin Popadin , Konstantin Gunbin

Increased prevalence of clonal hematopoiesis of indeterminate potential amongst people living with HIV.

Scientific reports

Avec: Alexander G Bick , Konstantin Popadin , Christian W Thorball , Md Mesbah Uddin , Markella V Zanni , Bing Yu , Matthias Cavassini , Andri Rauch , Philip Tarr , Patrick Schmid , Enos Bernasconi , Huldrych F Günthard , Peter Libby , Eric Boerwinkle , Paul J McLaren , Christie M Ballantyne , Steven Grinspoon , Pradeep Natarajan , Jacques Fellay , Auteur inconnu

Reanalysis of mtDNA mutations of human primordial germ cells (PGCs) reveals NUMT contamination and suggests that selection in PGCs may be positive.

Mitochondrion

Avec: Zoë Fleischmann , Auden Cote-L'Heureux , Melissa Franco , Sergey Oreshkov , Sofia Annis , Mark Khrapko , Dylan Alden , Konstantin Popadin , Dori C Woods , Jonathan L Tilly , Konstantin Khrapko

Molecular design of hypothalamus development.

Nature

Avec: Roman A Romanov , Evgenii O Tretiakov , Maria Eleni Kastriti , Maja Zupancic , Martin Häring , Solomiia Korchynska , Konstantin Popadin , Marco Benevento , Patrick Rebernik , Francois Lallemend , Katsuhiko Nishimori , Frédéric Clotman , William D Andrews , John G Parnavelas , Matthias Farlik , Christoph Bock , Igor Adameyko , Tomas Hökfelt , Erik Keimpema , Tibor Harkany

From Normal to Obesity and Back: The Associations between Mitochondrial DNA Copy Number, Gender, and Body Mass Index.

Cells

Avec: Daria Skuratovskaia , Larisa Litvinova , Maria Vulf , Pavel Zatolokin , Konstantin Popadin , Ilia Mazunin

Chromatin three-dimensional interactions mediate genetic effects on gene expression.

Science (New York, N.Y.)

Avec: O Delaneau , M Zazhytska , C Borel , G Giannuzzi , G Rey , C Howald , S Kumar , H Ongen , K Popadin , D Marbach , G Ambrosini , D Bielser , D Hacker , L Romano , P Ribaux , M Wiederkehr , E Falconnet , P Bucher , S Bergmann , S E Antonarakis , A Reymond , E T Dermitzakis

Increased CHIP Prevalence Amongst People Living with HIV.

medRxiv : the preprint server for health sciences

Avec: Alexander G Bick , Konstantin Popadin , Christian W Thorball , Md Mesbah Uddin , Markella Zanni , Bing Yu , Matthias Cavassini , Andri Rauch , Philip Tarr , Patrick Schmid , Enos Bernasconi , Huldrych F Günthard , Peter Libby , Eric Boerwinkle , Paul J McLaren , Christie M Ballantyne , Steven Grinspoon , Pradeep Natarajan , Jacques Fellay

A mitochondria-specific mutational signature of aging: increased rate of A > G substitutions on the heavy strand.

Nucleic acids research

Avec: Alina G Mikhailova , Alina A Mikhailova , Kristina Ushakova , Evgeny O Tretiakov , Dmitrii Iliushchenko , Victor Shamansky , Valeria Lobanova , Ivan Kozenkov , Bogdan Efimenko , Andrey A Yurchenko , Elena Kozenkova , Evgeny M Zdobnov , Vsevolod Makeev , Valerian Yurov , Masashi Tanaka , Irina Gostimskaya , Zoe Fleischmann , Sofia Annis , Melissa Franco , Kevin Wasko , Stepan Denisov , Wolfram S Kunz , Dmitry Knorre , Ilya Mazunin , Sergey Nikolaev , Jacques Fellay , Alexandre Reymond , Konstantin Khrapko , Konstantin Gunbin , Konstantin Popadin

Live Birth of a Healthy Child in a Couple with Identical mtDNA Carrying a Pathogenic c.471_477delTTTAAAAinsG Variant in the

Genes

Avec: Maria Tofilo , Natalia Voronova , Leila Nigmatullina , Elena Kuznetsova , Valeria Timonina , Bogdan Efimenko , Oybek Turgunkhujaev , Svetlana Avdeichik , Muhammad Ansar , Konstantin Popadin , Anastasia Kirillova , Ilya Mazunin

Secondary structure of the human mitochondrial genome affects formation of deletions.

BMC biology

Avec: Victor Shamanskiy , Alina A Mikhailova , Evgenii O Tretiakov , Kristina Ushakova , Alina G Mikhailova , Sergei Oreshkov , Dmitry A Knorre , Natalia Ree , Jonathan B Overdevest , Samuel W Lukowski , Irina Gostimskaya , Valerian Yurov , Chia-Wei Liou , Tsu-Kung Lin , Wolfram S Kunz , Alexandre Reymond , Ilya Mazunin , Georgii A Bazykin , Jacques Fellay , Masashi Tanaka , Konstantin Khrapko , Konstantin Gunbin , Konstantin Popadin

Réseau de co-auteurs

Konstantin Popadin 11 collaborations

Konstantin Khrapko 5 collaborations

Konstantin Gunbin 4 collaborations

Melissa Franco 4 collaborations

Jacques Fellay 4 collaborations

Sofia Annis 3 collaborations

Zoe Fleischmann 3 collaborations

Bogdan Efimenko 3 collaborations

Ilya Mazunin 3 collaborations

Mark Khrapko 2 collaborations

Auden Cote-L'Heureux 2 collaborations

Dori C Woods 2 collaborations

Jonathan L Tilly 2 collaborations

Alexander G Bick 2 collaborations

Christian W Thorball 2 collaborations

Md Mesbah Uddin 2 collaborations

Bing Yu 2 collaborations

Matthias Cavassini 2 collaborations

Andri Rauch 2 collaborations

Philip Tarr 2 collaborations

Patrick Schmid 2 collaborations

Enos Bernasconi 2 collaborations

Huldrych F Günthard 2 collaborations

Peter Libby 2 collaborations

Eric Boerwinkle 2 collaborations

Paul J McLaren 2 collaborations

Christie M Ballantyne 2 collaborations

Steven Grinspoon 2 collaborations

Pradeep Natarajan 2 collaborations

Evgenii O Tretiakov 2 collaborations

Alina G Mikhailova 2 collaborations

Alina A Mikhailova 2 collaborations

Kristina Ushakova 2 collaborations

Valerian Yurov 2 collaborations

Masashi Tanaka 2 collaborations

Irina Gostimskaya 2 collaborations

Wolfram S Kunz 2 collaborations

Alexandre Reymond 2 collaborations

Leonid Peshkin 1 collaboration

Yevgenya Kraytsberg 1 collaboration

Natalya Markuzon 1 collaboration

Rebecca R Ackermann 1 collaboration

Sarah J Pickett 1 collaboration

Dylan Aidlen 1 collaboration

David Stein 1 collaboration

Natasha Markuzon 1 collaboration

Maxim Braverman 1 collaboration

Doug M Turnbull 1 collaboration

Markella V Zanni 1 collaboration

None None 1 collaboration

Zoë Fleischmann 1 collaboration

Sergey Oreshkov 1 collaboration

Dylan Alden 1 collaboration

Roman A Romanov 1 collaboration

Maria Eleni Kastriti 1 collaboration

Maja Zupancic 1 collaboration

Martin Häring 1 collaboration

Solomiia Korchynska 1 collaboration

Marco Benevento 1 collaboration

Patrick Rebernik 1 collaboration

Francois Lallemend 1 collaboration

Katsuhiko Nishimori 1 collaboration

Frédéric Clotman 1 collaboration

William D Andrews 1 collaboration

John G Parnavelas 1 collaboration

Matthias Farlik 1 collaboration

Christoph Bock 1 collaboration

Igor Adameyko 1 collaboration

Tomas Hökfelt 1 collaboration

Erik Keimpema 1 collaboration

Tibor Harkany 1 collaboration

Daria Skuratovskaia 1 collaboration

Larisa Litvinova 1 collaboration

Maria Vulf 1 collaboration

Pavel Zatolokin 1 collaboration

Ilia Mazunin 1 collaboration

O Delaneau 1 collaboration

M Zazhytska 1 collaboration

C Borel 1 collaboration

G Giannuzzi 1 collaboration

G Rey 1 collaboration

C Howald 1 collaboration

S Kumar 1 collaboration

H Ongen 1 collaboration

D Marbach 1 collaboration

G Ambrosini 1 collaboration

D Bielser 1 collaboration

D Hacker 1 collaboration

L Romano 1 collaboration

P Ribaux 1 collaboration

M Wiederkehr 1 collaboration

E Falconnet 1 collaboration

P Bucher 1 collaboration

S Bergmann 1 collaboration

S E Antonarakis 1 collaboration

A Reymond 1 collaboration

E T Dermitzakis 1 collaboration

Markella Zanni 1 collaboration

Evgeny O Tretiakov 1 collaboration

Dmitrii Iliushchenko 1 collaboration

Victor Shamansky 1 collaboration

Valeria Lobanova 1 collaboration

Ivan Kozenkov 1 collaboration

Andrey A Yurchenko 1 collaboration

Elena Kozenkova 1 collaboration

Evgeny M Zdobnov 1 collaboration

Vsevolod Makeev 1 collaboration

Kevin Wasko 1 collaboration

Stepan Denisov 1 collaboration

Dmitry Knorre 1 collaboration

Sergey Nikolaev 1 collaboration

Maria Tofilo 1 collaboration

Natalia Voronova 1 collaboration

Leila Nigmatullina 1 collaboration

Elena Kuznetsova 1 collaboration

Valeria Timonina 1 collaboration

Oybek Turgunkhujaev 1 collaboration

Svetlana Avdeichik 1 collaboration

Muhammad Ansar 1 collaboration

Anastasia Kirillova 1 collaboration

Victor Shamanskiy 1 collaboration

Sergei Oreshkov 1 collaboration

Dmitry A Knorre 1 collaboration

Natalia Ree 1 collaboration

Jonathan B Overdevest 1 collaboration

Samuel W Lukowski 1 collaboration

Chia-Wei Liou 1 collaboration

Tsu-Kung Lin 1 collaboration

Georgii A Bazykin 1 collaboration