Accueil
Kyle Ellrott
Kyle Ellrott
Affiliations
Biomedical Engineering, Oregon Health and Science University, Portland, OR, 97239, USA.
ORCID: http://orcid.org/0000-0002-6573-5900
Publications (11)
Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples.
Nature communications
Avec:
Matthew H Bailey
,
William U Meyerson
,
Lewis Jonathan Dursi
,
Liang-Bo Wang
,
Guanlan Dong
,
Wen-Wei Liang
,
Amila Weerasinghe
,
Shantao Li
,
Yize Li
,
Sean Kelso
,
Auteur inconnu
,
Auteur inconnu
,
Gordon Saksena
,
Kyle Ellrott
,
Michael C Wendl
,
David A Wheeler
,
Gad Getz
,
Jared T Simpson
,
Mark B Gerstein
,
Li Ding
,
Auteur inconnu
Reproducible biomedical benchmarking in the cloud: lessons from crowd-sourced data challenges.
Genome biology
Avec:
Kyle Ellrott
,
Alex Buchanan
,
Allison Creason
,
Michael Mason
,
Thomas Schaffter
,
Bruce Hoff
,
James Eddy
,
John M Chilton
,
Thomas Yu
,
Joshua M Stuart
,
Julio Saez-Rodriguez
,
Gustavo Stolovitzky
,
Paul C Boutros
,
Justin Guinney
recountmethylation enables flexible analysis of public blood DNA methylation array data.
Bioinformatics advances
Avec:
Sean K Maden
,
Brian Walsh
,
Kyle Ellrott
,
Kasper D Hansen
,
Reid F Thompson
,
Abhinav Nellore
Crowd-sourced benchmarking of single-sample tumor subclonal reconstruction.
Nature biotechnology
Avec:
Adriana Salcedo
,
Maxime Tarabichi
,
Alex Buchanan
,
Shadrielle M G Espiritu
,
Hongjiu Zhang
,
Kaiyi Zhu
,
Tai-Hsien Ou Yang
,
Ignaty Leshchiner
,
Dimitris Anastassiou
,
Yuanfang Guan
,
Gun Ho Jang
,
Mohammed F E Mootor
,
Kerstin Haase
,
Amit G Deshwar
,
William Zou
,
Imaad Umar
,
Stefan Dentro
,
Jeff A Wintersinger
,
Kami Chiotti
,
Jonas Demeulemeester
,
Clemency Jolly
,
Lesia Sycza
,
Minjeong Ko
,
Auteur inconnu
,
Auteur inconnu
,
David C Wedge
,
Quaid D Morris
,
Kyle Ellrott
,
Peter Van Loo
,
Paul C Boutros
A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer.
Nature genetics
Avec:
Alex H Wagner
,
Brian Walsh
,
Georgia Mayfield
,
David Tamborero
,
Dmitriy Sonkin
,
Kilannin Krysiak
,
Jordi Deu-Pons
,
Ryan P Duren
,
Jianjiong Gao
,
Julie McMurry
,
Sara Patterson
,
Catherine Del Vecchio Fitz
,
Beth A Pitel
,
Ozman U Sezerman
,
Kyle Ellrott
,
Jeremy L Warner
,
Damian T Rieke
,
Tero Aittokallio
,
Ethan Cerami
,
Deborah I Ritter
,
Lynn M Schriml
,
Robert R Freimuth
,
Melissa Haendel
,
Gordana Raca
,
Subha Madhavan
,
Michael Baudis
,
Jacques S Beckmann
,
Rodrigo Dienstmann
,
Debyani Chakravarty
,
Xuan Shirley Li
,
Susan Mockus
,
Olivier Elemento
,
Nikolaus Schultz
,
Nuria Lopez-Bigas
,
Mark Lawler
,
Jeremy Goecks
,
Malachi Griffith
,
Obi L Griffith
,
Adam A Margolin
,
Auteur inconnu
neoepiscope improves neoepitope prediction with multivariant phasing.
Bioinformatics (Oxford, England)
Avec:
Mary A Wood
,
Austin Nguyen
,
Adam J Struck
,
Kyle Ellrott
,
Abhinav Nellore
,
Reid F Thompson
Exploring Integrative Analysis Using the BioMedical Evidence Graph.
JCO clinical cancer informatics
Avec:
Adam Struck
,
Brian Walsh
,
Alexander Buchanan
,
Jordan A Lee
,
Ryan Spangler
,
Joshua M Stuart
,
Kyle Ellrott
Author Correction: Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples.
Nature communications
Avec:
Matthew H Bailey
,
William U Meyerson
,
Lewis Jonathan Dursi
,
Liang-Bo Wang
,
Guanlan Dong
,
Wen-Wei Liang
,
Amila Weerasinghe
,
Shantao Li
,
Yize Li
,
Sean Kelso
,
Auteur inconnu
,
Auteur inconnu
,
Gordon Saksena
,
Kyle Ellrott
,
Michael C Wendl
,
David A Wheeler
,
Gad Getz
,
Jared T Simpson
,
Mark B Gerstein
,
Li Ding
,
Auteur inconnu
A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery.
Cell systems
Avec:
Allison Creason
,
David Haan
,
Kristen Dang
,
Kami E Chiotti
,
Matthew Inkman
,
Andrew Lamb
,
Thomas Yu
,
Yin Hu
,
Thea C Norman
,
Alex Buchanan
,
Marijke J van Baren
,
Ryan Spangler
,
M Rick Rollins
,
Paul T Spellman
,
Dmitri Rozanov
,
Jin Zhang
,
Christopher A Maher
,
Cristian Caloian
,
John D Watson
,
Sebastian Uhrig
,
Brian J Haas
,
Miten Jain
,
Mark Akeson
,
Mehmet Eren Ahsen
,
Auteur inconnu
,
Gustavo Stolovitzky
,
Justin Guinney
,
Paul C Boutros
,
Joshua M Stuart
,
Kyle Ellrott
A community effort to create standards for evaluating tumor subclonal reconstruction.
Nature biotechnology
Avec:
Adriana Salcedo
,
Maxime Tarabichi
,
Shadrielle Melijah G Espiritu
,
Amit G Deshwar
,
Matei David
,
Nathan M Wilson
,
Stefan Dentro
,
Jeff A Wintersinger
,
Lydia Y Liu
,
Minjeong Ko
,
Srinivasan Sivanandan
,
Hongjiu Zhang
,
Kaiyi Zhu
,
Tai-Hsien Ou Yang
,
John M Chilton
,
Alex Buchanan
,
Christopher M Lalansingh
,
Christine P'ng
,
Catalina V Anghel
,
Imaad Umar
,
Bryan Lo
,
William Zou
,
Auteur inconnu
,
Jared T Simpson
,
Joshua M Stuart
,
Dimitris Anastassiou
,
Yuanfang Guan
,
Adam D Ewing
,
Kyle Ellrott
,
David C Wedge
,
Quaid Morris
,
Peter Van Loo
,
Paul C Boutros
Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space.
Cell genomics
Avec:
Michael C Schatz
,
Anthony A Philippakis
,
Enis Afgan
,
Eric Banks
,
Vincent J Carey
,
Robert J Carroll
,
Alessandro Culotti
,
Kyle Ellrott
,
Jeremy Goecks
,
Robert L Grossman
,
Ira M Hall
,
Kasper D Hansen
,
Jonathan Lawson
,
Jeffrey T Leek
,
Anne O'Donnell Luria
,
Stephen Mosher
,
Martin Morgan
,
Anton Nekrutenko
,
Brian D O'Connor
,
Kevin Osborn
,
Benedict Paten
,
Candace Patterson
,
Frederick J Tan
,
Casey Overby Taylor
,
Jennifer Vessio
,
Levi Waldron
,
Ting Wang
,
Kristin Wuichet
Réseau de co-auteurs
None None
11 collaborations
Alex Buchanan
4 collaborations
Joshua M Stuart
4 collaborations
Paul C Boutros
4 collaborations
Jared T Simpson
3 collaborations
Brian Walsh
3 collaborations
Matthew H Bailey
2 collaborations
William U Meyerson
2 collaborations
Lewis Jonathan Dursi
2 collaborations
Liang-Bo Wang
2 collaborations
Guanlan Dong
2 collaborations
Wen-Wei Liang
2 collaborations
Amila Weerasinghe
2 collaborations
Shantao Li
2 collaborations
Yize Li
2 collaborations
Sean Kelso
2 collaborations
Gordon Saksena
2 collaborations
Michael C Wendl
2 collaborations
David A Wheeler
2 collaborations
Gad Getz
2 collaborations
Mark B Gerstein
2 collaborations
Li Ding
2 collaborations
Allison Creason
2 collaborations
John M Chilton
2 collaborations
Thomas Yu
2 collaborations
Gustavo Stolovitzky
2 collaborations
Justin Guinney
2 collaborations
Kasper D Hansen
2 collaborations
Reid F Thompson
2 collaborations
Abhinav Nellore
2 collaborations
Adriana Salcedo
2 collaborations
Maxime Tarabichi
2 collaborations
Hongjiu Zhang
2 collaborations
Kaiyi Zhu
2 collaborations
Tai-Hsien Ou Yang
2 collaborations
Dimitris Anastassiou
2 collaborations
Yuanfang Guan
2 collaborations
Amit G Deshwar
2 collaborations
William Zou
2 collaborations
Imaad Umar
2 collaborations
Stefan Dentro
2 collaborations
Jeff A Wintersinger
2 collaborations
Minjeong Ko
2 collaborations
David C Wedge
2 collaborations
Peter Van Loo
2 collaborations
Jeremy Goecks
2 collaborations
Ryan Spangler
2 collaborations
Michael Mason
1 collaboration
Thomas Schaffter
1 collaboration
Bruce Hoff
1 collaboration
James Eddy
1 collaboration
Julio Saez-Rodriguez
1 collaboration
Sean K Maden
1 collaboration
Shadrielle M G Espiritu
1 collaboration
Ignaty Leshchiner
1 collaboration
Gun Ho Jang
1 collaboration
Mohammed F E Mootor
1 collaboration
Kerstin Haase
1 collaboration
Kami Chiotti
1 collaboration
Jonas Demeulemeester
1 collaboration
Clemency Jolly
1 collaboration
Lesia Sycza
1 collaboration
Quaid D Morris
1 collaboration
Alex H Wagner
1 collaboration
Georgia Mayfield
1 collaboration
David Tamborero
1 collaboration
Dmitriy Sonkin
1 collaboration
Kilannin Krysiak
1 collaboration
Jordi Deu-Pons
1 collaboration
Ryan P Duren
1 collaboration
Jianjiong Gao
1 collaboration
Julie McMurry
1 collaboration
Sara Patterson
1 collaboration
Catherine Del Vecchio Fitz
1 collaboration
Beth A Pitel
1 collaboration
Ozman U Sezerman
1 collaboration
Jeremy L Warner
1 collaboration
Damian T Rieke
1 collaboration
Tero Aittokallio
1 collaboration
Ethan Cerami
1 collaboration
Deborah I Ritter
1 collaboration
Lynn M Schriml
1 collaboration
Robert R Freimuth
1 collaboration
Melissa Haendel
1 collaboration
Gordana Raca
1 collaboration
Subha Madhavan
1 collaboration
Michael Baudis
1 collaboration
Jacques S Beckmann
1 collaboration
Rodrigo Dienstmann
1 collaboration
Debyani Chakravarty
1 collaboration
Xuan Shirley Li
1 collaboration
Susan Mockus
1 collaboration
Olivier Elemento
1 collaboration
Nikolaus Schultz
1 collaboration
Nuria Lopez-Bigas
1 collaboration
Mark Lawler
1 collaboration
Malachi Griffith
1 collaboration
Obi L Griffith
1 collaboration
Adam A Margolin
1 collaboration
Mary A Wood
1 collaboration
Austin Nguyen
1 collaboration
Adam J Struck
1 collaboration
Adam Struck
1 collaboration
Alexander Buchanan
1 collaboration
Jordan A Lee
1 collaboration
David Haan
1 collaboration
Kristen Dang
1 collaboration
Kami E Chiotti
1 collaboration
Matthew Inkman
1 collaboration
Andrew Lamb
1 collaboration
Yin Hu
1 collaboration
Thea C Norman
1 collaboration
Marijke J van Baren
1 collaboration
M Rick Rollins
1 collaboration
Paul T Spellman
1 collaboration
Dmitri Rozanov
1 collaboration
Jin Zhang
1 collaboration
Christopher A Maher
1 collaboration
Cristian Caloian
1 collaboration
John D Watson
1 collaboration
Sebastian Uhrig
1 collaboration
Brian J Haas
1 collaboration
Miten Jain
1 collaboration
Mark Akeson
1 collaboration
Mehmet Eren Ahsen
1 collaboration
Shadrielle Melijah G Espiritu
1 collaboration
Matei David
1 collaboration
Nathan M Wilson
1 collaboration
Lydia Y Liu
1 collaboration
Srinivasan Sivanandan
1 collaboration
Christopher M Lalansingh
1 collaboration
Christine P'ng
1 collaboration
Catalina V Anghel
1 collaboration
Bryan Lo
1 collaboration
Adam D Ewing
1 collaboration
Quaid Morris
1 collaboration
Michael C Schatz
1 collaboration
Anthony A Philippakis
1 collaboration
Enis Afgan
1 collaboration
Eric Banks
1 collaboration
Vincent J Carey
1 collaboration
Robert J Carroll
1 collaboration
Alessandro Culotti
1 collaboration
Robert L Grossman
1 collaboration
Ira M Hall
1 collaboration
Jonathan Lawson
1 collaboration
Jeffrey T Leek
1 collaboration
Anne O'Donnell Luria
1 collaboration
Stephen Mosher
1 collaboration
Martin Morgan
1 collaboration
Anton Nekrutenko
1 collaboration
Brian D O'Connor
1 collaboration
Kevin Osborn
1 collaboration
Benedict Paten
1 collaboration
Candace Patterson
1 collaboration
Frederick J Tan
1 collaboration
Casey Overby Taylor
1 collaboration
Jennifer Vessio
1 collaboration
Levi Waldron
1 collaboration
Ting Wang
1 collaboration
Kristin Wuichet
1 collaboration