Lily Geidelberg

Affiliations

MRC Centre for Global Infectious Disease Analysis and Department of Infectious Disease Epidemiology, Imperial College London, London W2 1PG, United Kingdom.

Publications (14)

Sequencing identifies multiple early introductions of SARS-CoV-2 to the New York City region.

Genome research

Avec: Matthew T Maurano , Sitharam Ramaswami , Paul Zappile , Dacia Dimartino , Ludovic Boytard , André M Ribeiro-Dos-Santos , Nicholas A Vulpescu , Gael Westby , Guomiao Shen , Xiaojun Feng , Megan S Hogan , Manon Ragonnet-Cronin , Lily Geidelberg , Christian Marier , Peter Meyn , Yutong Zhang , John Cadley , Raquel Ordoñez , Raven Luther , Emily Huang , Emily Guzman , Carolina Arguelles-Grande , Kimon V Argyropoulos , Margaret Black , Antonio Serrano , Melissa E Call , Min Jae Kim , Brendan Belovarac , Tatyana Gindin , Andrew Lytle , Jared Pinnell , Theodore Vougiouklakis , John Chen , Lawrence H Lin , Amy Rapkiewicz , Vanessa Raabe , Marie I Samanovic , George Jour , Iman Osman , Maria Aguero-Rosenfeld , Mark J Mulligan , Erik M Volz , Paolo Cotzia , Matija Snuderl , Adriana Heguy

Assessing the Potential Impact of Disruptions Due to COVID-19 on HIV Among Key and Lower-Risk Populations in the Largest Cities of Cameroon and Benin.

Journal of acquired immune deficiency syndromes (1999)

Avec: Romain Silhol , Lily Geidelberg , Kate M Mitchell , Sharmistha Mishra , Dobromir Dimitrov , Anna Bowring , Luc Béhanzin , Fernand Guédou , Souleymane Diabaté , Sheree Schwartz , Serge C Billong , Iliassou Mfochive Njindam , Daniel Levitt , Christinah Mukandavire , Mathieu Maheu-Giroux , Minttu M Rönn , Shona Dalal , Peter Vickerman , Stefan Baral , Michel Alary , Marie-Claude Boily

Model design for non-parametric phylodynamic inference and applications to pathogen surveillance.

bioRxiv : the preprint server for biology

Avec: Xavier Didelot , Lily Geidelberg , Auteur inconnu , Erik M Volz

Genomic epidemiology of a densely sampled COVID-19 outbreak in China.

Virus evolution

Avec: Lily Geidelberg , Olivia Boyd , David Jorgensen , Igor Siveroni , Fabrícia F Nascimento , Robert Johnson , Manon Ragonnet-Cronin , Han Fu , Haowei Wang , Xiaoyue Xi , Wei Chen , Dehui Liu , Yingying Chen , Mengmeng Tian , Wei Tan , Junjie Zai , Wanying Sun , Jiandong Li , Junhua Li , Erik M Volz , Xingguang Li , Qing Nie

Reduction in mobility and COVID-19 transmission.

Nature communications

Avec: Pierre Nouvellet , Sangeeta Bhatia , Anne Cori , Kylie E C Ainslie , Marc Baguelin , Samir Bhatt , Adhiratha Boonyasiri , Nicholas F Brazeau , Lorenzo Cattarino , Laura V Cooper , Helen Coupland , Zulma M Cucunuba , Gina Cuomo-Dannenburg , Amy Dighe , Bimandra A Djaafara , Ilaria Dorigatti , Oliver D Eales , Sabine L van Elsland , Fabricia F Nascimento , Richard G FitzJohn , Katy A M Gaythorpe , Lily Geidelberg , William D Green , Arran Hamlet , Katharina Hauck , Wes Hinsley , Natsuko Imai , Benjamin Jeffrey , Edward Knock , Daniel J Laydon , John A Lees , Tara Mangal , Thomas A Mellan , Gemma Nedjati-Gilani , Kris V Parag , Margarita Pons-Salort , Manon Ragonnet-Cronin , Steven Riley , H Juliette T Unwin , Robert Verity , Michaela A C Vollmer , Erik Volz , Patrick G T Walker , Caroline E Walters , Haowei Wang , Oliver J Watson , Charles Whittaker , Lilith K Whittles , Xiaoyue Xi , Neil M Ferguson , Christl A Donnelly

Estimating the potential impact of COVID-19-related disruptions on HIV incidence and mortality among men who have sex with men in the United States: a modelling study.

medRxiv : the preprint server for health sciences

Avec: Kate M Mitchell , Dobromir Dimitrov , Romain Silhol , Lily Geidelberg , Mia Moore , Albert Liu , Chris Beyrer , Kenneth H Mayer , Stefan Baral , Marie-Claude Boily

Genetic evidence for the association between COVID-19 epidemic severity and timing of non-pharmaceutical interventions.

Nature communications

Avec: Manon Ragonnet-Cronin , Olivia Boyd , Lily Geidelberg , David Jorgensen , Fabricia F Nascimento , Igor Siveroni , Robert A Johnson , Marc Baguelin , Zulma M Cucunubá , Elita Jauneikaite , Swapnil Mishra , Oliver J Watson , Neil Ferguson , Anne Cori , Christl A Donnelly , Erik Volz

Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity.

Cell

Avec: Erik Volz , Verity Hill , John T McCrone , Anna Price , David Jorgensen , Áine O'Toole , Joel Southgate , Robert Johnson , Ben Jackson , Fabricia F Nascimento , Sara M Rey , Samuel M Nicholls , Rachel M Colquhoun , Ana da Silva Filipe , James Shepherd , David J Pascall , Rajiv Shah , Natasha Jesudason , Kathy Li , Ruth Jarrett , Nicole Pacchiarini , Matthew Bull , Lily Geidelberg , Igor Siveroni , Auteur inconnu , Ian Goodfellow , Nicholas J Loman , Oliver G Pybus , David L Robertson , Emma C Thomson , Andrew Rambaut , Thomas R Connor

Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England.

Nature

Avec: Erik Volz , Swapnil Mishra , Meera Chand , Jeffrey C Barrett , Robert Johnson , Lily Geidelberg , Wes R Hinsley , Daniel J Laydon , Gavin Dabrera , Áine O'Toole , Robert Amato , Manon Ragonnet-Cronin , Ian Harrison , Ben Jackson , Cristina V Ariani , Olivia Boyd , Nicholas J Loman , John T McCrone , Sónia Gonçalves , David Jorgensen , Richard Myers , Verity Hill , David K Jackson , Katy Gaythorpe , Natalie Groves , John Sillitoe , Dominic P Kwiatkowski , Auteur inconnu , Seth Flaxman , Oliver Ratmann , Samir Bhatt , Susan Hopkins , Axel Gandy , Andrew Rambaut , Neil M Ferguson

Phylodynamic analysis of HIV-1 subtypes B, C and CRF 02_AG in Senegal.

Epidemics

Avec: Fabrícia F Nascimento , Stefan Baral , Lily Geidelberg , Christinah Mukandavire , Sheree R Schwartz , Gnilane Turpin , Nguissali Turpin , Daouda Diouf , Nafissatou Leye Diouf , Karleen Coly , Coumba Toure Kane , Cheikh Ndour , Peter Vickerman , Marie-Claude Boily , Erik M Volz

The impact of COVID-19 and strategies for mitigation and suppression in low- and middle-income countries.

Science (New York, N.Y.)

Avec: Patrick G T Walker , Charles Whittaker , Oliver J Watson , Marc Baguelin , Peter Winskill , Arran Hamlet , Bimandra A Djafaara , Zulma Cucunubá , Daniela Olivera Mesa , Will Green , Hayley Thompson , Shevanthi Nayagam , Kylie E C Ainslie , Sangeeta Bhatia , Samir Bhatt , Adhiratha Boonyasiri , Olivia Boyd , Nicholas F Brazeau , Lorenzo Cattarino , Gina Cuomo-Dannenburg , Amy Dighe , Christl A Donnelly , Ilaria Dorigatti , Sabine L van Elsland , Rich FitzJohn , Han Fu , Katy A M Gaythorpe , Lily Geidelberg , Nicholas Grassly , David Haw , Sarah Hayes , Wes Hinsley , Natsuko Imai , David Jorgensen , Edward Knock , Daniel Laydon , Swapnil Mishra , Gemma Nedjati-Gilani , Lucy C Okell , H Juliette Unwin , Robert Verity , Michaela Vollmer , Caroline E Walters , Haowei Wang , Yuanrong Wang , Xiaoyue Xi , David G Lalloo , Neil M Ferguson , Azra C Ghani

Sequencing identifies multiple early introductions of SARS-CoV-2 to the New York City Region.

medRxiv : the preprint server for health sciences

Mathematical Model Impact Analysis of a Real-Life Pre-exposure Prophylaxis and Treatment-As-Prevention Study Among Female Sex Workers in Cotonou, Benin.

Journal of acquired immune deficiency syndromes (1999)

Avec: Lily Geidelberg , Kate M Mitchell , Michel Alary , Aminata Mboup , Luc Béhanzin , Fernand Guédou , Nassirou Geraldo , Ella Goma-Matsétsé , Katia Giguère , Marlène Aza-Gnandji , Léon Kessou , Mamadou Diallo , René K Kêkê , Moussa Bachabi , Kania Dramane , Christian Lafrance , Dissou Affolabi , Souleymane Diabaté , Marie-Pierre Gagnon , Djimon M Zannou , Flore Gangbo , Romain Silhol , Fiona Cianci , Peter Vickerman , Marie-Claude Boily

The potential effect of COVID-19-related disruptions on HIV incidence and HIV-related mortality among men who have sex with men in the USA: a modelling study.

The lancet. HIV

Avec: Kate M Mitchell , Dobromir Dimitrov , Romain Silhol , Lily Geidelberg , Mia Moore , Albert Liu , Chris Beyrer , Kenneth H Mayer , Stefan Baral , Marie-Claude Boily

Réseau de co-auteurs

Manon Ragonnet-Cronin 6 collaborations

Erik M Volz 5 collaborations

Marie-Claude Boily 5 collaborations

David Jorgensen 5 collaborations

Romain Silhol 4 collaborations

Kate M Mitchell 4 collaborations

Stefan Baral 4 collaborations

Olivia Boyd 4 collaborations

Erik Volz 4 collaborations

Dobromir Dimitrov 3 collaborations

Peter Vickerman 3 collaborations

None None 3 collaborations

Igor Siveroni 3 collaborations

Robert Johnson 3 collaborations

Haowei Wang 3 collaborations

Xiaoyue Xi 3 collaborations

Marc Baguelin 3 collaborations

Samir Bhatt 3 collaborations

Fabricia F Nascimento 3 collaborations

Oliver J Watson 3 collaborations

Neil M Ferguson 3 collaborations

Christl A Donnelly 3 collaborations

Swapnil Mishra 3 collaborations

Matthew T Maurano 2 collaborations

Sitharam Ramaswami 2 collaborations

Paul Zappile 2 collaborations

Dacia Dimartino 2 collaborations

Ludovic Boytard 2 collaborations

André M Ribeiro-Dos-Santos 2 collaborations

Nicholas A Vulpescu 2 collaborations

Gael Westby 2 collaborations

Guomiao Shen 2 collaborations

Xiaojun Feng 2 collaborations

Megan S Hogan 2 collaborations

Christian Marier 2 collaborations

Peter Meyn 2 collaborations

Yutong Zhang 2 collaborations

John Cadley 2 collaborations

Raquel Ordoñez 2 collaborations

Raven Luther 2 collaborations

Emily Huang 2 collaborations

Emily Guzman 2 collaborations

Carolina Arguelles-Grande 2 collaborations

Kimon V Argyropoulos 2 collaborations

Margaret Black 2 collaborations

Antonio Serrano 2 collaborations

Melissa E Call 2 collaborations

Min Jae Kim 2 collaborations

Brendan Belovarac 2 collaborations

Tatyana Gindin 2 collaborations

Andrew Lytle 2 collaborations

Jared Pinnell 2 collaborations

Theodore Vougiouklakis 2 collaborations

John Chen 2 collaborations

Lawrence H Lin 2 collaborations

Amy Rapkiewicz 2 collaborations

Vanessa Raabe 2 collaborations

Marie I Samanovic 2 collaborations

George Jour 2 collaborations

Iman Osman 2 collaborations

Maria Aguero-Rosenfeld 2 collaborations

Mark J Mulligan 2 collaborations

Paolo Cotzia 2 collaborations

Matija Snuderl 2 collaborations

Adriana Heguy 2 collaborations

Luc Béhanzin 2 collaborations

Fernand Guédou 2 collaborations

Souleymane Diabaté 2 collaborations

Christinah Mukandavire 2 collaborations

Michel Alary 2 collaborations

Fabrícia F Nascimento 2 collaborations

Han Fu 2 collaborations

Sangeeta Bhatia 2 collaborations

Anne Cori 2 collaborations

Kylie E C Ainslie 2 collaborations

Adhiratha Boonyasiri 2 collaborations

Nicholas F Brazeau 2 collaborations

Lorenzo Cattarino 2 collaborations

Gina Cuomo-Dannenburg 2 collaborations

Amy Dighe 2 collaborations

Ilaria Dorigatti 2 collaborations

Sabine L van Elsland 2 collaborations

Katy A M Gaythorpe 2 collaborations

Arran Hamlet 2 collaborations

Wes Hinsley 2 collaborations

Natsuko Imai 2 collaborations

Edward Knock 2 collaborations

Daniel J Laydon 2 collaborations

Gemma Nedjati-Gilani 2 collaborations

Robert Verity 2 collaborations

Patrick G T Walker 2 collaborations

Caroline E Walters 2 collaborations

Charles Whittaker 2 collaborations

Mia Moore 2 collaborations

Albert Liu 2 collaborations

Chris Beyrer 2 collaborations

Kenneth H Mayer 2 collaborations

Verity Hill 2 collaborations

John T McCrone 2 collaborations

Áine O'Toole 2 collaborations

Ben Jackson 2 collaborations

Nicholas J Loman 2 collaborations

Andrew Rambaut 2 collaborations

Sharmistha Mishra 1 collaboration

Anna Bowring 1 collaboration

Sheree Schwartz 1 collaboration

Serge C Billong 1 collaboration

Iliassou Mfochive Njindam 1 collaboration

Daniel Levitt 1 collaboration

Mathieu Maheu-Giroux 1 collaboration

Minttu M Rönn 1 collaboration

Shona Dalal 1 collaboration

Xavier Didelot 1 collaboration

Wei Chen 1 collaboration

Dehui Liu 1 collaboration

Yingying Chen 1 collaboration

Mengmeng Tian 1 collaboration

Wei Tan 1 collaboration

Junjie Zai 1 collaboration

Wanying Sun 1 collaboration

Jiandong Li 1 collaboration

Junhua Li 1 collaboration

Xingguang Li 1 collaboration

Qing Nie 1 collaboration

Pierre Nouvellet 1 collaboration

Laura V Cooper 1 collaboration

Helen Coupland 1 collaboration

Zulma M Cucunuba 1 collaboration

Bimandra A Djaafara 1 collaboration

Oliver D Eales 1 collaboration

Richard G FitzJohn 1 collaboration

William D Green 1 collaboration

Katharina Hauck 1 collaboration

Benjamin Jeffrey 1 collaboration

John A Lees 1 collaboration

Tara Mangal 1 collaboration

Thomas A Mellan 1 collaboration

Kris V Parag 1 collaboration

Margarita Pons-Salort 1 collaboration

Steven Riley 1 collaboration

H Juliette T Unwin 1 collaboration

Michaela A C Vollmer 1 collaboration

Lilith K Whittles 1 collaboration

Robert A Johnson 1 collaboration

Zulma M Cucunubá 1 collaboration

Elita Jauneikaite 1 collaboration

Neil Ferguson 1 collaboration

Anna Price 1 collaboration

Joel Southgate 1 collaboration

Sara M Rey 1 collaboration

Samuel M Nicholls 1 collaboration

Rachel M Colquhoun 1 collaboration

Ana da Silva Filipe 1 collaboration

James Shepherd 1 collaboration

David J Pascall 1 collaboration

Rajiv Shah 1 collaboration

Natasha Jesudason 1 collaboration

Kathy Li 1 collaboration

Ruth Jarrett 1 collaboration

Nicole Pacchiarini 1 collaboration

Matthew Bull 1 collaboration

Ian Goodfellow 1 collaboration

Oliver G Pybus 1 collaboration

David L Robertson 1 collaboration

Emma C Thomson 1 collaboration

Thomas R Connor 1 collaboration

Meera Chand 1 collaboration

Jeffrey C Barrett 1 collaboration

Wes R Hinsley 1 collaboration

Gavin Dabrera 1 collaboration

Robert Amato 1 collaboration

Ian Harrison 1 collaboration

Cristina V Ariani 1 collaboration

Sónia Gonçalves 1 collaboration

Richard Myers 1 collaboration

David K Jackson 1 collaboration

Katy Gaythorpe 1 collaboration

Natalie Groves 1 collaboration

John Sillitoe 1 collaboration

Dominic P Kwiatkowski 1 collaboration

Seth Flaxman 1 collaboration

Oliver Ratmann 1 collaboration

Susan Hopkins 1 collaboration

Axel Gandy 1 collaboration

Sheree R Schwartz 1 collaboration

Gnilane Turpin 1 collaboration

Nguissali Turpin 1 collaboration

Daouda Diouf 1 collaboration

Nafissatou Leye Diouf 1 collaboration

Karleen Coly 1 collaboration

Coumba Toure Kane 1 collaboration

Cheikh Ndour 1 collaboration

Peter Winskill 1 collaboration

Bimandra A Djafaara 1 collaboration

Zulma Cucunubá 1 collaboration

Daniela Olivera Mesa 1 collaboration

Will Green 1 collaboration

Hayley Thompson 1 collaboration

Shevanthi Nayagam 1 collaboration

Rich FitzJohn 1 collaboration

Nicholas Grassly 1 collaboration

David Haw 1 collaboration

Sarah Hayes 1 collaboration

Daniel Laydon 1 collaboration

Lucy C Okell 1 collaboration

H Juliette Unwin 1 collaboration

Michaela Vollmer 1 collaboration

Yuanrong Wang 1 collaboration

David G Lalloo 1 collaboration

Azra C Ghani 1 collaboration

Aminata Mboup 1 collaboration

Nassirou Geraldo 1 collaboration

Ella Goma-Matsétsé 1 collaboration

Katia Giguère 1 collaboration

Marlène Aza-Gnandji 1 collaboration

Léon Kessou 1 collaboration

Mamadou Diallo 1 collaboration

René K Kêkê 1 collaboration

Moussa Bachabi 1 collaboration

Kania Dramane 1 collaboration

Christian Lafrance 1 collaboration

Dissou Affolabi 1 collaboration

Marie-Pierre Gagnon 1 collaboration

Djimon M Zannou 1 collaboration

Flore Gangbo 1 collaboration

Fiona Cianci 1 collaboration