Livia S Zaramela

Affiliations

Department of Pediatrics, Rady Children's Hospital, University of California, San Diego, La Jolla, CA, 92093, USA.
Department of Bioengineering, University of California, San Diego, La Jolla, CA, 92093, USA.

Publications (22)

Transcriptional profiling of lung macrophages identifies a predictive signature for inflammatory lung disease in preterm infants.

Communications biology

Avec: Debashis Sahoo , Livia S Zaramela , Gilberto E Hernandez , Uyen Mai , Sahar Taheri , Dharanidhar Dang , Ashley N Stouch , Rachel M Medal , Alyssa M McCoy , Judy L Aschner , Timothy S Blackwell , Karsten Zengler , Lawrence S Prince

Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity.

bioRxiv : the preprint server for biology

Avec: Cameron Martino , Benjamin P Kellman , Daniel R Sandoval , Thomas Mandel Clausen , Clarisse A Marotz , Se Jin Song , Stephen Wandro , Livia S Zaramela , Rodolfo Antonio Salido Benítez , Qiyun Zhu , Erick Armingol , Yoshiki Vázquez-Baeza , Daniel McDonald , James T Sorrentino , Bryn Taylor , Pedro Belda-Ferre , Chenguang Liang , Yujie Zhang , Luca Schifanella , Nichole R Klatt , Aki S Havulinna , Pekka Jousilahti , Shi Huang , Niina Haiminen , Laxmi Parida , Ho-Cheol Kim , Austin D Swafford , Karsten Zengler , Susan Cheng , Michael Inouye , Teemu Niiranen , Mohit Jain , Veikko Salomaa , Jeffrey D Esko , Nathan E Lewis , Rob Knight

The nonlesional skin surface distinguishes atopic dermatitis with food allergy as a unique endotype.

Science translational medicine

Avec: Donald Y M Leung , Agustin Calatroni , Livia S Zaramela , Petra K LeBeau , Nathan Dyjack , Kanwaljit Brar , Gloria David , Keli Johnson , Susan Leung , Marco Ramirez-Gama , Bo Liang , Cydney Rios , Michael T Montgomery , Brittany N Richers , Clifton F Hall , Kathryn A Norquest , John Jung , Irina Bronova , Simion Kreimer , C Conover Talbot , Debra Crumrine , Robert N Cole , Peter Elias , Karsten Zengler , Max A Seibold , Evgeny Berdyshev , Elena Goleva

Interplay of Staphylococcal and Host Proteases Promotes Skin Barrier Disruption in Netherton Syndrome.

Cell reports

Avec: Michael R Williams , Laura Cau , Yichen Wang , Drishti Kaul , James A Sanford , Livia S Zaramela , Shadi Khalil , Anna M Butcher , Karsten Zengler , Alexander R Horswill , Christopher L Dupont , Alain Hovnanian , Richard L Gallo

Gut bacteria responding to dietary change encode sialidases that exhibit preference for red meat-associated carbohydrates.

Nature microbiology

Avec: Livia S Zaramela , Cameron Martino , Frederico Alisson-Silva , Steven D Rees , Sandra L Diaz , Léa Chuzel , Mehul B Ganatra , Christopher H Taron , Patrick Secrest , Cristal Zuñiga , Jianbo Huang , Dionicio Siegel , Geoffrey Chang , Ajit Varki , Karsten Zengler

Environmental stimuli drive a transition from cooperation to competition in synthetic phototrophic communities.

Nature microbiology

Avec: Cristal Zuñiga , Chien-Ting Li , Geng Yu , Mahmoud M Al-Bassam , Tingting Li , Liqun Jiang , Livia S Zaramela , Michael Guarnieri , Michael J Betenbaugh , Karsten Zengler

The Ubiquitous Human Skin Commensal Staphylococcus hominis Protects against Opportunistic Pathogens.

mBio

Avec: Morgan M Severn , Michael R Williams , Ali Shahbandi , Zoie L Bunch , Laurie M Lyon , Amber Nguyen , Livia S Zaramela , Daniel A Todd , Karsten Zengler , Nadja B Cech , Richard L Gallo , Alexander R Horswill

Acetate reprograms gut microbiota during alcohol consumption.

Nature communications

Avec: Cameron Martino , Livia S Zaramela , Bei Gao , Mallory Embree , Janna Tarasova , Seth J Parker , Yanhan Wang , Huikuan Chu , Peng Chen , Kuei-Chuan Lee , Daniela Domingos Galzerani , Jivani M Gengatharan , Asama Lekbua , Maxwell Neal , Rob Knight , Hidekazu Tsukamoto , Christian M Metallo , Bernd Schnabl , Karsten Zengler

A Genome-Scale Atlas Reveals Complex Interplay of Transcription and Translation in an Archaeon.

mSystems

Avec: Alan P R Lorenzetti , Ulrike Kusebauch , Lívia S Zaramela , Wei-Ju Wu , João P P de Almeida , Serdar Turkarslan , Adrián L G de Lomana , José V Gomes-Filho , Ricardo Z N Vêncio , Robert L Moritz , Tie Koide , Nitin S Baliga

Genomic and Transcriptomic Evidence Supports Methane Metabolism in

mSystems

Avec: Yi-Fan Liu , Jing Chen , Livia S Zaramela , Li-Ying Wang , Serge Maurice Mbadinga , Zhao-Wei Hou , Xiao-Lin Wu , Ji-Dong Gu , Karsten Zengler , Bo-Zhong Mu

Quorum sensing between bacterial species on the skin protects against epidermal injury in atopic dermatitis.

Science translational medicine

Avec: Michael R Williams , Stephen K Costa , Livia S Zaramela , Shadi Khalil , Daniel A Todd , Heather L Winter , James A Sanford , Alan M O'Neill , Marc C Liggins , Teruaki Nakatsuji , Nadja B Cech , Ambrose L Cheung , Karsten Zengler , Alexander R Horswill , Richard L Gallo

A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities.

bioRxiv : the preprint server for biology

Avec: Justin P Shaffer , Clarisse Marotz , Pedro Belda-Ferre , Cameron Martino , Stephen Wandro , Mehrbod Estaki , Rodolfo A Salido , Carolina S Carpenter , Livia S Zaramela , Jeremiah J Minich , MacKenzie Bryant , Karenina Sanders , Serena Fraraccio , Gail Ackermann , Gregory Humphrey , Austin D Swafford , Sandrine Miller-Montgomery , Rob Knight

The sum is greater than the parts: exploiting microbial communities to achieve complex functions.

Current opinion in biotechnology

Avec: Livia S Zaramela , Oriane Moyne , Manish Kumar , Cristal Zuniga , Juan D Tibocha-Bonilla , Karsten Zengler

Zebra: Static and Dynamic Genome Cover Thresholds with Overlapping References.

mSystems

Avec: Daniel Hakim , Stephen Wandro , Karsten Zengler , Livia S Zaramela , Brent Nowinski , Austin Swafford , Qiyun Zhu , Se Jin Song , Antonio Gonzalez , Daniel McDonald , Rob Knight

Guild and Niche Determination Enable Targeted Alteration of the Microbiome.

bioRxiv : the preprint server for biology

Avec: Oriane Moyne , Mahmoud Al-Bassam , Chloe Lieng , Deepan Thiruppathy , Grant J Norton , Manish Kumar , Eli Haddad , Livia S Zaramela , Karsten Zengler

Intestinal α1-2-Fucosylation Contributes to Obesity and Steatohepatitis in Mice.

Cellular and molecular gastroenterology and hepatology

Avec: Rongrong Zhou , Cristina Llorente , Jinling Cao , Livia S Zaramela , Suling Zeng , Bei Gao , Shang-Zhen Li , Ryan D Welch , Feng-Qing Huang , Lian-Wen Qi , Chuyue Pan , Yan Huang , Pengchen Zhou , Iris Beussen , Ying Zhang , Gregory Bryam , Oliver Fiehn , Lirui Wang , E-Hu Liu , Ruth T Yu , Michael Downes , Ronald M Evans , Karrie Goglin , Derrick E Fouts , David A Brenner , Lars Bode , Xuegong Fan , Karsten Zengler , Bernd Schnabl

The impact of skin care products on skin chemistry and microbiome dynamics.

BMC biology

Avec: Amina Bouslimani , Ricardo da Silva , Tomasz Kosciolek , Stefan Janssen , Chris Callewaert , Amnon Amir , Kathleen Dorrestein , Alexey V Melnik , Livia S Zaramela , Ji-Nu Kim , Gregory Humphrey , Tara Schwartz , Karenina Sanders , Caitriona Brennan , Tal Luzzatto-Knaan , Gail Ackermann , Daniel McDonald , Karsten Zengler , Rob Knight , Pieter C Dorrestein

Establishing microbial composition measurement standards with reference frames.

Nature communications

Avec: James T Morton , Clarisse Marotz , Alex Washburne , Justin Silverman , Livia S Zaramela , Anna Edlund , Karsten Zengler , Rob Knight

Author Correction: Environmental stimuli drive a transition from cooperation to competition in synthetic phototrophic communities.

Nature microbiology

Avec: Cristal Zuñiga , Chien-Ting Li , Geng Yu , Mahmoud M Al-Bassam , Tingting Li , Liqun Jiang , Livia S Zaramela , Michael Guarnieri , Michael J Betenbaugh , Karsten Zengler

Identification of potential target genes associated with the reversion of androgen-dependent skeletal muscle atrophy.

Archives of biochemistry and biophysics

Avec: Priscila de O Coelho , Flavia A Guarnier , Leonardo Bruno Figueiredo , Livia S Zaramela , Enio S A Pacini , Rosely O Godinho , Marcelo D Gomes

A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities.

BioTechniques

synDNA-a Synthetic DNA Spike-in Method for Absolute Quantification of Shotgun Metagenomic Sequencing.

mSystems

Avec: Livia S Zaramela , Megan Tjuanta , Oriane Moyne , Maxwell Neal , Karsten Zengler

Réseau de co-auteurs

Karsten Zengler 18 collaborations

Rob Knight 7 collaborations

Cameron Martino 5 collaborations

Stephen Wandro 4 collaborations

Daniel McDonald 3 collaborations

Pedro Belda-Ferre 3 collaborations

Austin D Swafford 3 collaborations

Michael R Williams 3 collaborations

Alexander R Horswill 3 collaborations

Richard L Gallo 3 collaborations

Cristal Zuñiga 3 collaborations

Clarisse Marotz 3 collaborations

Karenina Sanders 3 collaborations

Gail Ackermann 3 collaborations

Gregory Humphrey 3 collaborations

Oriane Moyne 3 collaborations

Se Jin Song 2 collaborations

Qiyun Zhu 2 collaborations

James A Sanford 2 collaborations

Shadi Khalil 2 collaborations

Chien-Ting Li 2 collaborations

Geng Yu 2 collaborations

Mahmoud M Al-Bassam 2 collaborations

Tingting Li 2 collaborations

Liqun Jiang 2 collaborations

Michael Guarnieri 2 collaborations

Michael J Betenbaugh 2 collaborations

Daniel A Todd 2 collaborations

Nadja B Cech 2 collaborations

Bei Gao 2 collaborations

Maxwell Neal 2 collaborations

Bernd Schnabl 2 collaborations

Justin P Shaffer 2 collaborations

Mehrbod Estaki 2 collaborations

Rodolfo A Salido 2 collaborations

Carolina S Carpenter 2 collaborations

Jeremiah J Minich 2 collaborations

MacKenzie Bryant 2 collaborations

Serena Fraraccio 2 collaborations

Sandrine Miller-Montgomery 2 collaborations

Manish Kumar 2 collaborations

Debashis Sahoo 1 collaboration

Gilberto E Hernandez 1 collaboration

Uyen Mai 1 collaboration

Sahar Taheri 1 collaboration

Dharanidhar Dang 1 collaboration

Ashley N Stouch 1 collaboration

Rachel M Medal 1 collaboration

Alyssa M McCoy 1 collaboration

Judy L Aschner 1 collaboration

Timothy S Blackwell 1 collaboration

Lawrence S Prince 1 collaboration

Benjamin P Kellman 1 collaboration

Daniel R Sandoval 1 collaboration

Thomas Mandel Clausen 1 collaboration

Clarisse A Marotz 1 collaboration

Rodolfo Antonio Salido Benítez 1 collaboration

Erick Armingol 1 collaboration

Yoshiki Vázquez-Baeza 1 collaboration

James T Sorrentino 1 collaboration

Bryn Taylor 1 collaboration

Chenguang Liang 1 collaboration

Yujie Zhang 1 collaboration

Luca Schifanella 1 collaboration

Nichole R Klatt 1 collaboration

Aki S Havulinna 1 collaboration

Pekka Jousilahti 1 collaboration

Shi Huang 1 collaboration

Niina Haiminen 1 collaboration

Laxmi Parida 1 collaboration

Ho-Cheol Kim 1 collaboration

Susan Cheng 1 collaboration

Michael Inouye 1 collaboration

Teemu Niiranen 1 collaboration

Mohit Jain 1 collaboration

Veikko Salomaa 1 collaboration

Jeffrey D Esko 1 collaboration

Nathan E Lewis 1 collaboration

Donald Y M Leung 1 collaboration

Agustin Calatroni 1 collaboration

Petra K LeBeau 1 collaboration

Nathan Dyjack 1 collaboration

Kanwaljit Brar 1 collaboration

Gloria David 1 collaboration

Keli Johnson 1 collaboration

Susan Leung 1 collaboration

Marco Ramirez-Gama 1 collaboration

Bo Liang 1 collaboration

Cydney Rios 1 collaboration

Michael T Montgomery 1 collaboration

Brittany N Richers 1 collaboration

Clifton F Hall 1 collaboration

Kathryn A Norquest 1 collaboration

John Jung 1 collaboration

Irina Bronova 1 collaboration

Simion Kreimer 1 collaboration

C Conover Talbot 1 collaboration

Debra Crumrine 1 collaboration

Robert N Cole 1 collaboration

Peter Elias 1 collaboration

Max A Seibold 1 collaboration

Evgeny Berdyshev 1 collaboration

Elena Goleva 1 collaboration

Laura Cau 1 collaboration

Yichen Wang 1 collaboration

Drishti Kaul 1 collaboration

Anna M Butcher 1 collaboration

Christopher L Dupont 1 collaboration

Alain Hovnanian 1 collaboration

Frederico Alisson-Silva 1 collaboration

Steven D Rees 1 collaboration

Sandra L Diaz 1 collaboration

Léa Chuzel 1 collaboration

Mehul B Ganatra 1 collaboration

Christopher H Taron 1 collaboration

Patrick Secrest 1 collaboration

Jianbo Huang 1 collaboration

Dionicio Siegel 1 collaboration

Geoffrey Chang 1 collaboration

Ajit Varki 1 collaboration

Morgan M Severn 1 collaboration

Ali Shahbandi 1 collaboration

Zoie L Bunch 1 collaboration

Laurie M Lyon 1 collaboration

Amber Nguyen 1 collaboration

Mallory Embree 1 collaboration

Janna Tarasova 1 collaboration

Seth J Parker 1 collaboration

Yanhan Wang 1 collaboration

Huikuan Chu 1 collaboration

Peng Chen 1 collaboration

Kuei-Chuan Lee 1 collaboration

Daniela Domingos Galzerani 1 collaboration

Jivani M Gengatharan 1 collaboration

Asama Lekbua 1 collaboration

Hidekazu Tsukamoto 1 collaboration

Christian M Metallo 1 collaboration

Alan P R Lorenzetti 1 collaboration

Ulrike Kusebauch 1 collaboration

Lívia S Zaramela 1 collaboration

Wei-Ju Wu 1 collaboration

João P P de Almeida 1 collaboration

Serdar Turkarslan 1 collaboration

Adrián L G de Lomana 1 collaboration

José V Gomes-Filho 1 collaboration

Ricardo Z N Vêncio 1 collaboration

Robert L Moritz 1 collaboration

Tie Koide 1 collaboration

Nitin S Baliga 1 collaboration

Yi-Fan Liu 1 collaboration

Jing Chen 1 collaboration

Li-Ying Wang 1 collaboration

Serge Maurice Mbadinga 1 collaboration

Zhao-Wei Hou 1 collaboration

Xiao-Lin Wu 1 collaboration

Ji-Dong Gu 1 collaboration

Bo-Zhong Mu 1 collaboration

Stephen K Costa 1 collaboration

Heather L Winter 1 collaboration

Alan M O'Neill 1 collaboration

Marc C Liggins 1 collaboration

Teruaki Nakatsuji 1 collaboration

Ambrose L Cheung 1 collaboration

Cristal Zuniga 1 collaboration

Juan D Tibocha-Bonilla 1 collaboration

Daniel Hakim 1 collaboration

Brent Nowinski 1 collaboration

Austin Swafford 1 collaboration

Antonio Gonzalez 1 collaboration

Mahmoud Al-Bassam 1 collaboration

Chloe Lieng 1 collaboration

Deepan Thiruppathy 1 collaboration

Grant J Norton 1 collaboration

Eli Haddad 1 collaboration

Rongrong Zhou 1 collaboration

Cristina Llorente 1 collaboration

Jinling Cao 1 collaboration

Suling Zeng 1 collaboration

Shang-Zhen Li 1 collaboration

Ryan D Welch 1 collaboration

Feng-Qing Huang 1 collaboration

Lian-Wen Qi 1 collaboration

Chuyue Pan 1 collaboration

Yan Huang 1 collaboration

Pengchen Zhou 1 collaboration

Iris Beussen 1 collaboration

Ying Zhang 1 collaboration

Gregory Bryam 1 collaboration

Oliver Fiehn 1 collaboration

Lirui Wang 1 collaboration

E-Hu Liu 1 collaboration

Ruth T Yu 1 collaboration

Michael Downes 1 collaboration

Ronald M Evans 1 collaboration

Karrie Goglin 1 collaboration

Derrick E Fouts 1 collaboration

David A Brenner 1 collaboration

Lars Bode 1 collaboration

Xuegong Fan 1 collaboration

Amina Bouslimani 1 collaboration

Ricardo da Silva 1 collaboration

Tomasz Kosciolek 1 collaboration

Stefan Janssen 1 collaboration

Chris Callewaert 1 collaboration

Amnon Amir 1 collaboration

Kathleen Dorrestein 1 collaboration

Alexey V Melnik 1 collaboration

Ji-Nu Kim 1 collaboration

Tara Schwartz 1 collaboration

Caitriona Brennan 1 collaboration

Tal Luzzatto-Knaan 1 collaboration

Pieter C Dorrestein 1 collaboration

James T Morton 1 collaboration

Alex Washburne 1 collaboration

Justin Silverman 1 collaboration

Anna Edlund 1 collaboration

Priscila de O Coelho 1 collaboration

Flavia A Guarnier 1 collaboration

Leonardo Bruno Figueiredo 1 collaboration

Enio S A Pacini 1 collaboration

Rosely O Godinho 1 collaboration

Marcelo D Gomes 1 collaboration

Megan Tjuanta 1 collaboration