M Marczyk

Affiliations

Department of Data Mining and Engineering, Silesian University of Technology, Gliwice, Poland; Department of Breast Medical Oncology, Yale School of Medicine, New Haven, USA.

Publications (36)

Lung cancer survival and comorbidities in lung cancer screening participants of the Gdańsk screening cohort.

European journal of public health

Avec: Marcin Ostrowski , Michał Marczyk , Robert Dziedzic , Małgorzata Jelitto-Górska , Tomasz Marjański , Sylwia Pisiak , Tadeusz Jędrzejczyk , Joanna Polańska , Tomasz Zdrojewski , Bogdan Wojtyniak , Witold Rzyman

POLCOVID: a multicenter multiclass chest X-ray database (Poland, 2020-2021).

Scientific data

Avec: Aleksandra Suwalska , Joanna Tobiasz , Wojciech Prazuch , Marek Socha , Pawel Foszner , Damian Piotrowski , Katarzyna Gruszczynska , Magdalena Sliwinska , Jerzy Walecki , Tadeusz Popiela , Grzegorz Przybylski , Mateusz Nowak , Piotr Fiedor , Malgorzata Pawlowska , Robert Flisiak , Krzysztof Simon , Gabriela Zapolska , Barbara Gizycka , Edyta Szurowska , Auteur inconnu , Michal Marczyk , Andrzej Cieszanowski , Joanna Polanska

Pre-analytical effects on whole transcriptome and targeted RNA sequencing analysis in cytology: The effects of prolonged time in storage of effusion specimens prior to preservation.

Cytopathology : official journal of the British Society for Clinical Cytology

Avec: Gloria H Sura , Kevin Tran , Chunxiao Fu , Lili Du , Michał Marczyk , Rebekah E Gould , Eveline Chen , Amy M Tasto , Agata A Tinnirello , W Fraser Symmans

Evaluation of zero counts to better understand the discrepancies between bulk and single-cell RNA-Seq platforms.

Computational and structural biotechnology journal

Avec: Joanna Zyla , Anna Papiez , Jun Zhao , Rihao Qu , Xiaotong Li , Yuval Kluger , Joanna Polanska , Christos Hatzis , Lajos Pusztai , Michal Marczyk

Phosphoenolpyruvate carboxykinase-2 (PCK2) is a therapeutic target in triple-negative breast cancer.

Breast cancer research and treatment

Avec: Vignesh Gunasekharan , Hao-Kuen Lin , Michal Marczyk , Alejandro Rios-Hoyo , Gerson Espinoza Campos , Naing Lin Shan , Mostafa Ahmed , Sheila Umlauf , Peter Gareiss , Raaisa Raaisa , Richard Williams , Rebecca Cardone , Stephan Siebel , Richard Kibbey , Yulia V Surovtseva , Lajos Pusztai

Comprehensive Analysis of Metabolic Isozyme Targets in Cancer.

Cancer research

Avec: Michal Marczyk , Vignesh Gunasekharan , David Casadevall , Tao Qing , Julia Foldi , Raghav Sehgal , Naing Lin Shan , Kim R M Blenman , Tess A O'Meara , Sheila Umlauf , Yulia V Surovtseva , Viswanathan Muthusamy , Jesse Rinehart , Rachel J Perry , Richard Kibbey , Christos Hatzis , Lajos Pusztai

Predictive Markers of Response to Neoadjuvant Durvalumab with Nab-Paclitaxel and Dose-Dense Doxorubicin/Cyclophosphamide in Basal-Like Triple-Negative Breast Cancer.

Clinical cancer research : an official journal of the American Association for Cancer Research

Avec: Kim R M Blenman , Michal Marczyk , Thomas Karn , Tao Qing , Xiaotong Li , Vignesh Gunasekharan , Vesal Yaghoobi , Yalai Bai , Eiman Y Ibrahim , Tristen Park , Andrea Silber , Denise M Wolf , Emily Reisenbichler , Carsten Denkert , Bruno V Sinn , Mariya Rozenblit , Julia Foldi , David L Rimm , Sibylle Loibl , Lajos Pusztai

Quantifying Spatial Heterogeneity of Tumor-Infiltrating Lymphocytes to Predict Survival of Individual Cancer Patients.

Journal of personalized medicine

Avec: Aleksandra Suwalska , Lukasz Zientek , Joanna Polanska , Michal Marczyk

EpidermaQuant: Unsupervised Detection and Quantification of Epidermal Differentiation Markers on H-DAB-Stained Images of Reconstructed Human Epidermis.

Diagnostics (Basel, Switzerland)

Avec: Dawid Zamojski , Agnieszka Gogler , Dorota Scieglinska , Michal Marczyk

Multi-Omics Investigation of Innate Navitoclax Resistance in Triple-Negative Breast Cancer Cells.

Cancers

Avec: Michal Marczyk , Gauri A Patwardhan , Jun Zhao , Rihao Qu , Xiaotong Li , Vikram B Wali , Abhishek K Gupta , Manoj M Pillai , Yuval Kluger , Qin Yan , Christos Hatzis , Lajos Pusztai , Vignesh Gunasekharan

Technical Validity of a Customized Assay of Sensitivity to Endocrine Therapy Using Sections from Fixed Breast Cancer Tissue.

Clinical chemistry

Avec: Rosanna Lau , Lili Du , Eveline Chen , Chunxiao Fu , Rebekah Gould , Michal Marczyk , Bruno V Sinn , Rachel Layman , Isabelle Bedrosian , Vicente Valero , W Fraser Symmans

Gene set enrichment for reproducible science: comparison of CERNO and eight other algorithms.

Bioinformatics (Oxford, England)

Avec: Joanna Zyla , Michal Marczyk , Teresa Domaszewska , Stefan H E Kaufmann , Joanna Polanska , January Weiner

GaMRed-Adaptive Filtering of High-Throughput Biological Data.

IEEE/ACM transactions on computational biology and bioinformatics

Avec: Michal Marczyk , Roman Jaksik , Andrzej Polanski , Joanna Polanska

Targeted RNAseq assay incorporating unique molecular identifiers for improved quantification of gene expression signatures and transcribed mutation fraction in fixed tumor samples.

BMC cancer

Avec: Chunxiao Fu , Michal Marczyk , Michael Samuels , Alexander J Trevarton , Jiaxin Qu , Rosanna Lau , Lili Du , Todd Pappas , Bruno V Sinn , Rebekah E Gould , Lajos Pusztai , Christos Hatzis , W Fraser Symmans

Tumor immune microenvironment of self-identified African American and non-African American triple negative breast cancer.

NPJ breast cancer

Avec: Michal Marczyk , Tao Qing , Tess O'Meara , Vesal Yagahoobi , Vasiliki Pelekanou , Yalai Bai , Emily Reisenbichler , Kimberly S Cole , Xiaotong Li , Vignesh Gunasekharan , Eiman Ibrahim , Kristina Fanucci , Wei Wei , David L Rimm , Lajos Pusztai , Kim R M Blenman

Molecular differences between younger versus older ER-positive and HER2-negative breast cancers.

NPJ breast cancer

Avec: Tao Qing , Thomas Karn , Mariya Rozenblit , Julia Foldi , Michal Marczyk , Naing Lin Shan , Kim Blenman , Uwe Holtrich , Kevin Kalinsky , Funda Meric-Bernstam , Lajos Pusztai

Assessment of stained direct cytology smears of breast cancer for whole transcriptome and targeted messenger RNA sequencing.

Cancer cytopathology

Avec: Michal Marczyk , Chunxiao Fu , Rosanna Lau , Lili Du , Alexander J Trevarton , Bruno V Sinn , Rebekah E Gould , Lajos Pusztai , Christos Hatzis , William Fraser Symmans

Pathological changes or technical artefacts? The problem of the heterogenous databases in COVID-19 CXR image analysis.

Computer methods and programs in biomedicine

Avec: Marek Socha , Wojciech Prażuch , Aleksandra Suwalska , Paweł Foszner , Joanna Tobiasz , Jerzy Jaroszewicz , Katarzyna Gruszczynska , Magdalena Sliwinska , Mateusz Nowak , Barbara Gizycka , Gabriela Zapolska , Tadeusz Popiela , Grzegorz Przybylski , Piotr Fiedor , Malgorzata Pawlowska , Robert Flisiak , Krzysztof Simon , Jerzy Walecki , Andrzej Cieszanowski , Edyta Szurowska , Michal Marczyk , Joanna Polanska , Auteur inconnu

The impact of RNA extraction method on accurate RNA sequencing from formalin-fixed paraffin-embedded tissues.

BMC cancer

Avec: Michal Marczyk , Chunxiao Fu , Rosanna Lau , Lili Du , Alexander J Trevarton , Bruno V Sinn , Rebekah E Gould , Lajos Pusztai , Christos Hatzis , W Fraser Symmans

BatchI: Batch effect Identification in high-throughput screening data using a dynamic programming algorithm.

Bioinformatics (Oxford, England)

Avec: Anna Papiez , Michal Marczyk , Joanna Polanska , Andrzej Polanski

Germline variant burden in cancer genes correlates with age at diagnosis and somatic mutation burden.

Nature communications

Avec: Tao Qing , Hussein Mohsen , Michal Marczyk , Yixuan Ye , Tess O'Meara , Hongyu Zhao , Jeffrey P Townsend , Mark Gerstein , Christos Hatzis , Yuval Kluger , Lajos Pusztai

Diverse immune response of DNA damage repair-deficient tumors.

Cell reports. Medicine

Avec: Tao Qing , Tomi Jun , Katherine E Lindblad , Amaia Lujambio , Michal Marczyk , Lajos Pusztai , Kuan-Lin Huang

Immunological Differences Between Immune-Rich Estrogen Receptor-Positive and Immune-Rich Triple-Negative Breast Cancers.

JCO precision oncology

Avec: Tess O'Meara , Michal Marczyk , Tao Qing , Vesal Yaghoobi , Kim Blenman , Kimberly Cole , Vasiliki Pelekanou , David L Rimm , Lajos Pusztai

Cancer Relevance of Human Genes.

Journal of the National Cancer Institute

Avec: Tao Qing , Hussein Mohsen , Vincent L Cannataro , Michal Marczyk , Mariya Rozenblit , Julia Foldi , Michael Murray , Jeffrey P Townsend , Yuval Kluger , Mark Gerstein , Lajos Pusztai

Treatment Efficacy Score-continuous residual cancer burden-based metric to compare neoadjuvant chemotherapy efficacy between randomized trial arms in breast cancer trials.

Annals of oncology : official journal of the European Society for Medical Oncology

Avec: M Marczyk , A Mrukwa , C Yau , D Wolf , Y-Y Chen , R Balassanian , R Nanda , B A Parker , G Krings , H Sattar , J C Zeck , K S Albain , J C Boughey , M C Liu , A D Elias , A S Clark , S J Venters , S Shad , A Basu , S M Asare , M Buxton , A L Asare , H S Rugo , J Perlmutter , A M DeMichele , D Yee , D A Berry , L Van't Veer , W F Symmans , L Esserman , L Pusztai , Auteur inconnu

Influence of single-cell RNA sequencing data integration on the performance of differential gene expression analysis.

Frontiers in genetics

Avec: Tomasz Kujawa , Michał Marczyk , Joanna Polanska

Short- and long-term effects of radiation exposure at low dose and low dose rate in normal human VH10 fibroblasts.

Frontiers in public health

Avec: Pamela Akuwudike , Milagrosa López-Riego , Michal Marczyk , Zuzana Kocibalova , Fabian Brückner , Joanna Polańska , Andrzej Wojcik , Lovisa Lundholm

Molecular Profiling for Predictors of Radiosensitivity in Patients with Breast or Head-and-Neck Cancer.

Cancers

Avec: Kimi Drobin , Michal Marczyk , Martin Halle , Daniel Danielsson , Anna Papiez , Traimate Sangsuwan , Annika Bendes , Mun-Gwan Hong , Ulrika Qundos , Mats Harms-Ringdahl , Peter Wersäll , Joanna Polanska , Jochen M Schwenk , Siamak Haghdoost

Treatment scheduling effects on the evolution of drug resistance in heterogeneous cancer cell populations.

NPJ breast cancer

Avec: Gauri A Patwardhan , Michal Marczyk , Vikram B Wali , David F Stern , Lajos Pusztai , Christos Hatzis

Importance of SNP Dependency Correction and Association Integration for Gene Set Analysis in Genome-Wide Association Studies.

Frontiers in genetics

Avec: Michal Marczyk , Agnieszka Macioszek , Joanna Tobiasz , Joanna Polanska , Joanna Zyla

Neoadjuvant durvalumab plus weekly nab-paclitaxel and dose-dense doxorubicin/cyclophosphamide in triple-negative breast cancer.

NPJ breast cancer

Avec: Julia Foldi , Andrea Silber , Emily Reisenbichler , Kamaljeet Singh , Neal Fischbach , Justin Persico , Kerin Adelson , Anamika Katoch , Nina Horowitz , Donald Lannin , Anees Chagpar , Tristen Park , Michal Marczyk , Courtney Frederick , Trisha Burrello , Eiman Ibrahim , Tao Qing , Yalai Bai , Kim Blenman , David L Rimm , Lajos Pusztai

Analysis of the Applicability of microRNAs in Peripheral Blood Leukocytes as Biomarkers of Sensitivity and Exposure to Fractionated Radiotherapy towards Breast Cancer.

International journal of molecular sciences

Avec: Michal Marczyk , Joanna Polańska , Andrzej Wojcik , Lovisa Lundholm

miR-122 and miR-21 are Stable Components of miRNA Signatures of Early Lung Cancer after Validation in Three Independent Cohorts.

The Journal of molecular diagnostics : JMD

Avec: Joanna Zyla , Rafal Dziadziuszko , Michal Marczyk , Magdalena Sitkiewicz , Magdalena Szczepanowska , Edoardo Bottoni , Giulia Veronesi , Witold Rzyman , Joanna Polanska , Piotr Widlak

Combining Low-Dose Computer-Tomography-Based Radiomics and Serum Metabolomics for Diagnosis of Malignant Nodules in Participants of Lung Cancer Screening Studies.

Biomolecules

Avec: Joanna Zyla , Michal Marczyk , Wojciech Prazuch , Magdalena Sitkiewicz , Agata Durawa , Malgorzata Jelitto , Katarzyna Dziadziuszko , Karol Jelonek , Agata Kurczyk , Edyta Szurowska , Witold Rzyman , Piotr Widłak , Joanna Polanska

Peripheral blood immune parameters, response, and adverse events after neoadjuvant chemotherapy plus durvalumab in early-stage triple-negative breast cancer.

Breast cancer research and treatment

Avec: Julia Foldi , Kim R M Blenman , Michal Marczyk , Vignesh Gunasekharan , Alicja Polanska , Renelle Gee , Mya Davis , Adriana M Kahn , Andrea Silber , Lajos Pusztai

Trends in breast cancer specific death by clinical stage at diagnoses between 2000-2017.

Journal of the National Cancer Institute

Avec: Michal Marczyk , Adriana Kahn , Andrea Silber , Mariya Rosenblit , Michael P Digiovanna , Maryam Lustberg , Lajos Pusztai

Réseau de co-auteurs

Michal Marczyk 32 collaborations

Lajos Pusztai 18 collaborations

Joanna Polanska 12 collaborations

Tao Qing 9 collaborations

Christos Hatzis 8 collaborations

Vignesh Gunasekharan 6 collaborations

Julia Foldi 6 collaborations

Chunxiao Fu 5 collaborations

Lili Du 5 collaborations

Joanna Zyla 5 collaborations

Bruno V Sinn 5 collaborations

Rebekah E Gould 4 collaborations

W Fraser Symmans 4 collaborations

Xiaotong Li 4 collaborations

Yuval Kluger 4 collaborations

Kim R M Blenman 4 collaborations

Andrea Silber 4 collaborations

David L Rimm 4 collaborations

Rosanna Lau 4 collaborations

Michał Marczyk 3 collaborations

Joanna Polańska 3 collaborations

Witold Rzyman 3 collaborations

Aleksandra Suwalska 3 collaborations

Joanna Tobiasz 3 collaborations

Edyta Szurowska 3 collaborations

None None 3 collaborations

Anna Papiez 3 collaborations

Naing Lin Shan 3 collaborations

Yalai Bai 3 collaborations

Emily Reisenbichler 3 collaborations

Mariya Rozenblit 3 collaborations

Alexander J Trevarton 3 collaborations

Tess O'Meara 3 collaborations

Kim Blenman 3 collaborations

Wojciech Prazuch 2 collaborations

Marek Socha 2 collaborations

Katarzyna Gruszczynska 2 collaborations

Magdalena Sliwinska 2 collaborations

Jerzy Walecki 2 collaborations

Tadeusz Popiela 2 collaborations

Grzegorz Przybylski 2 collaborations

Mateusz Nowak 2 collaborations

Piotr Fiedor 2 collaborations

Malgorzata Pawlowska 2 collaborations

Robert Flisiak 2 collaborations

Krzysztof Simon 2 collaborations

Gabriela Zapolska 2 collaborations

Barbara Gizycka 2 collaborations

Andrzej Cieszanowski 2 collaborations

Eveline Chen 2 collaborations

Jun Zhao 2 collaborations

Rihao Qu 2 collaborations

Sheila Umlauf 2 collaborations

Richard Kibbey 2 collaborations

Yulia V Surovtseva 2 collaborations

Thomas Karn 2 collaborations

Vesal Yaghoobi 2 collaborations

Tristen Park 2 collaborations

Gauri A Patwardhan 2 collaborations

Vikram B Wali 2 collaborations

Andrzej Polanski 2 collaborations

Vasiliki Pelekanou 2 collaborations

Eiman Ibrahim 2 collaborations

Hussein Mohsen 2 collaborations

Jeffrey P Townsend 2 collaborations

Mark Gerstein 2 collaborations

Andrzej Wojcik 2 collaborations

Lovisa Lundholm 2 collaborations

Magdalena Sitkiewicz 2 collaborations

Marcin Ostrowski 1 collaboration

Robert Dziedzic 1 collaboration

Małgorzata Jelitto-Górska 1 collaboration

Tomasz Marjański 1 collaboration

Sylwia Pisiak 1 collaboration

Tadeusz Jędrzejczyk 1 collaboration

Tomasz Zdrojewski 1 collaboration

Bogdan Wojtyniak 1 collaboration

Pawel Foszner 1 collaboration

Damian Piotrowski 1 collaboration

Gloria H Sura 1 collaboration

Kevin Tran 1 collaboration

Amy M Tasto 1 collaboration

Agata A Tinnirello 1 collaboration

Hao-Kuen Lin 1 collaboration

Alejandro Rios-Hoyo 1 collaboration

Gerson Espinoza Campos 1 collaboration

Mostafa Ahmed 1 collaboration

Peter Gareiss 1 collaboration

Raaisa Raaisa 1 collaboration

Richard Williams 1 collaboration

Rebecca Cardone 1 collaboration

Stephan Siebel 1 collaboration

David Casadevall 1 collaboration

Raghav Sehgal 1 collaboration

Tess A O'Meara 1 collaboration

Viswanathan Muthusamy 1 collaboration

Jesse Rinehart 1 collaboration

Rachel J Perry 1 collaboration

Eiman Y Ibrahim 1 collaboration

Denise M Wolf 1 collaboration

Carsten Denkert 1 collaboration

Sibylle Loibl 1 collaboration

Lukasz Zientek 1 collaboration

Dawid Zamojski 1 collaboration

Agnieszka Gogler 1 collaboration

Dorota Scieglinska 1 collaboration

Abhishek K Gupta 1 collaboration

Manoj M Pillai 1 collaboration

Qin Yan 1 collaboration

Rebekah Gould 1 collaboration

Rachel Layman 1 collaboration

Isabelle Bedrosian 1 collaboration

Vicente Valero 1 collaboration

Teresa Domaszewska 1 collaboration

Stefan H E Kaufmann 1 collaboration

January Weiner 1 collaboration

Roman Jaksik 1 collaboration

Michael Samuels 1 collaboration

Jiaxin Qu 1 collaboration

Todd Pappas 1 collaboration

Vesal Yagahoobi 1 collaboration

Kimberly S Cole 1 collaboration

Kristina Fanucci 1 collaboration

Wei Wei 1 collaboration

Uwe Holtrich 1 collaboration

Kevin Kalinsky 1 collaboration

Funda Meric-Bernstam 1 collaboration

William Fraser Symmans 1 collaboration

Wojciech Prażuch 1 collaboration

Paweł Foszner 1 collaboration

Jerzy Jaroszewicz 1 collaboration

Yixuan Ye 1 collaboration

Hongyu Zhao 1 collaboration

Tomi Jun 1 collaboration

Katherine E Lindblad 1 collaboration

Amaia Lujambio 1 collaboration

Kuan-Lin Huang 1 collaboration

Kimberly Cole 1 collaboration

Vincent L Cannataro 1 collaboration

Michael Murray 1 collaboration

A Mrukwa 1 collaboration

C Yau 1 collaboration

D Wolf 1 collaboration

Y-Y Chen 1 collaboration

R Balassanian 1 collaboration

R Nanda 1 collaboration

B A Parker 1 collaboration

G Krings 1 collaboration

H Sattar 1 collaboration

J C Zeck 1 collaboration

K S Albain 1 collaboration

J C Boughey 1 collaboration

M C Liu 1 collaboration

A D Elias 1 collaboration

A S Clark 1 collaboration

S J Venters 1 collaboration

S Shad 1 collaboration

A Basu 1 collaboration

S M Asare 1 collaboration

M Buxton 1 collaboration

A L Asare 1 collaboration

H S Rugo 1 collaboration

J Perlmutter 1 collaboration

A M DeMichele 1 collaboration

D Yee 1 collaboration

D A Berry 1 collaboration

L Van't Veer 1 collaboration

W F Symmans 1 collaboration

L Esserman 1 collaboration

L Pusztai 1 collaboration

Tomasz Kujawa 1 collaboration

Pamela Akuwudike 1 collaboration

Milagrosa López-Riego 1 collaboration

Zuzana Kocibalova 1 collaboration

Fabian Brückner 1 collaboration

Kimi Drobin 1 collaboration

Martin Halle 1 collaboration

Daniel Danielsson 1 collaboration

Traimate Sangsuwan 1 collaboration

Annika Bendes 1 collaboration

Mun-Gwan Hong 1 collaboration

Ulrika Qundos 1 collaboration

Mats Harms-Ringdahl 1 collaboration

Peter Wersäll 1 collaboration

Jochen M Schwenk 1 collaboration

Siamak Haghdoost 1 collaboration

David F Stern 1 collaboration

Agnieszka Macioszek 1 collaboration

Kamaljeet Singh 1 collaboration

Neal Fischbach 1 collaboration

Justin Persico 1 collaboration

Kerin Adelson 1 collaboration

Anamika Katoch 1 collaboration

Nina Horowitz 1 collaboration

Donald Lannin 1 collaboration

Anees Chagpar 1 collaboration

Courtney Frederick 1 collaboration

Trisha Burrello 1 collaboration

Rafal Dziadziuszko 1 collaboration

Magdalena Szczepanowska 1 collaboration

Edoardo Bottoni 1 collaboration

Giulia Veronesi 1 collaboration

Piotr Widlak 1 collaboration

Agata Durawa 1 collaboration

Malgorzata Jelitto 1 collaboration

Katarzyna Dziadziuszko 1 collaboration

Karol Jelonek 1 collaboration

Agata Kurczyk 1 collaboration

Piotr Widłak 1 collaboration

Alicja Polanska 1 collaboration

Renelle Gee 1 collaboration

Mya Davis 1 collaboration

Adriana M Kahn 1 collaboration

Adriana Kahn 1 collaboration

Mariya Rosenblit 1 collaboration

Michael P Digiovanna 1 collaboration

Maryam Lustberg 1 collaboration