Matteo Ciciani

Affiliations

Department of Cellular, Computational and Integrative Biology-CIBIO, University of Trento, 38123 Povo Trento, Italy.

Publications (10)

Transcriptional Characterization of Stage I Epithelial Ovarian Cancer: A Multicentric Study.

Cells

Avec: Enrica Calura , Matteo Ciciani , Andrea Sambugaro , Lara Paracchini , Giuseppe Benvenuto , Salvatore Milite , Paolo Martini , Luca Beltrame , Flaminia Zane , Robert Fruscio , Martina Delle Marchette , Fulvio Borella , Germana Tognon , Antonella Ravaggi , Dionyssios Katsaros , Eliana Bignotti , Franco Odicino , Maurizio D'Incalci , Sergio Marchini , Chiara Romualdi

rScudo: an R package for classification of molecular profiles using rank-based signatures.

Bioinformatics (Oxford, England)

Avec: Matteo Ciciani , Thomas Cantore , Mario Lauria

Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly.

Genome biology

Avec: Nicolai Karcher , Eleonora Nigro , Michal Punčochář , Aitor Blanco-Míguez , Matteo Ciciani , Paolo Manghi , Moreno Zolfo , Fabio Cumbo , Serena Manara , Davide Golzato , Anna Cereseto , Manimozhiyan Arumugam , Thi Phuong Nam Bui , Hanne L P Tytgat , Mireia Valles-Colomer , Willem M de Vos , Nicola Segata

Automated identification of sequence-tailored Cas9 proteins using massive metagenomic data.

Nature communications

Avec: Matteo Ciciani , Michele Demozzi , Eleonora Pedrazzoli , Elisabetta Visentin , Laura Pezzè , Lorenzo Federico Signorini , Aitor Blanco-Miguez , Moreno Zolfo , Francesco Asnicar , Antonio Casini , Anna Cereseto , Nicola Segata

Discovering and exploring the hidden diversity of human gut viruses using highly enriched virome samples.

bioRxiv : the preprint server for biology

Avec: Moreno Zolfo , Andrea Silverj , Aitor Blanco-Míguez , Paolo Manghi , Omar Rota-Stabelli , Vitor Heidrich , Jordan Jensen , Sagun Maharjan , Eric Franzosa , Cristina Menni , Alessia Visconti , Federica Pinto , Matteo Ciciani , Curtis Huttenhower , Anna Cereseto , Francesco Asnicar , Hiroaki Kitano , Takuji Yamada , Nicola Segata

CoCas9 is a compact nuclease from the human microbiome for efficient and precise genome editing.

Nature communications

Avec: Eleonora Pedrazzoli , Michele Demozzi , Elisabetta Visentin , Matteo Ciciani , Ilaria Bonuzzi , Laura Pezzè , Lorenzo Lucchetta , Giulia Maule , Simone Amistadi , Federica Esposito , Mariangela Lupo , Annarita Miccio , Alberto Auricchio , Antonio Casini , Nicola Segata , Anna Cereseto

An optimized SpCas9 high-fidelity variant for direct protein delivery.

Molecular therapy : the journal of the American Society of Gene Therapy

Avec: Eleonora Pedrazzoli , Andrea Bianchi , Alessandro Umbach , Simone Amistadi , Mégane Brusson , Giacomo Frati , Matteo Ciciani , Kalina Aleksandra Badowska , Daniele Arosio , Annarita Miccio , Anna Cereseto , Antonio Casini

Functional restoration of a CFTR splicing mutation through RNA delivery of CRISPR adenine base editor.

Molecular therapy : the journal of the American Society of Gene Therapy

Avec: Simone Amistadi , Giulia Maule , Matteo Ciciani , Marjolein M Ensinck , Liesbeth De Keersmaecker , Anabela S Ramalho , Daniela Guidone , Martina Buccirossi , Luis J V Galietta , Marianne S Carlon , Anna Cereseto

Eukaryotic-driven directed evolution of Cas9 nucleases.

Genome biology

Avec: Giulia Vittoria Ruta , Matteo Ciciani , Eyemen Kheir , Michele Domenico Gentile , Simone Amistadi , Antonio Casini , Anna Cereseto

Prime editing functionally corrects cystic fibrosis-causing CFTR mutations in human organoids and airway epithelial cells.

Cell reports. Medicine

Avec: Mattijs Bulcaen , Phéline Kortleven , Ronald B Liu , Giulia Maule , Elise Dreano , Mairead Kelly , Marjolein M Ensinck , Sam Thierie , Maxime Smits , Matteo Ciciani , Aurelie Hatton , Benoit Chevalier , Anabela S Ramalho , Xavier Casadevall I Solvas , Zeger Debyser , François Vermeulen , Rik Gijsbers , Isabelle Sermet-Gaudelus , Anna Cereseto , Marianne S Carlon

Réseau de co-auteurs

Anna Cereseto 8 collaborations

Nicola Segata 4 collaborations

Antonio Casini 4 collaborations

Simone Amistadi 4 collaborations

Moreno Zolfo 3 collaborations

Eleonora Pedrazzoli 3 collaborations

Giulia Maule 3 collaborations

Aitor Blanco-Míguez 2 collaborations

Paolo Manghi 2 collaborations

Michele Demozzi 2 collaborations

Elisabetta Visentin 2 collaborations

Laura Pezzè 2 collaborations

Francesco Asnicar 2 collaborations

Annarita Miccio 2 collaborations

Marjolein M Ensinck 2 collaborations

Anabela S Ramalho 2 collaborations

Marianne S Carlon 2 collaborations

Enrica Calura 1 collaboration

Andrea Sambugaro 1 collaboration

Lara Paracchini 1 collaboration

Giuseppe Benvenuto 1 collaboration

Salvatore Milite 1 collaboration

Paolo Martini 1 collaboration

Luca Beltrame 1 collaboration

Flaminia Zane 1 collaboration

Robert Fruscio 1 collaboration

Martina Delle Marchette 1 collaboration

Fulvio Borella 1 collaboration

Germana Tognon 1 collaboration

Antonella Ravaggi 1 collaboration

Dionyssios Katsaros 1 collaboration

Eliana Bignotti 1 collaboration

Franco Odicino 1 collaboration

Maurizio D'Incalci 1 collaboration

Sergio Marchini 1 collaboration

Chiara Romualdi 1 collaboration

Thomas Cantore 1 collaboration

Mario Lauria 1 collaboration

Nicolai Karcher 1 collaboration

Eleonora Nigro 1 collaboration

Michal Punčochář 1 collaboration

Fabio Cumbo 1 collaboration

Serena Manara 1 collaboration

Davide Golzato 1 collaboration

Manimozhiyan Arumugam 1 collaboration

Thi Phuong Nam Bui 1 collaboration

Hanne L P Tytgat 1 collaboration

Mireia Valles-Colomer 1 collaboration

Willem M de Vos 1 collaboration

Lorenzo Federico Signorini 1 collaboration

Aitor Blanco-Miguez 1 collaboration

Andrea Silverj 1 collaboration

Omar Rota-Stabelli 1 collaboration

Vitor Heidrich 1 collaboration

Jordan Jensen 1 collaboration

Sagun Maharjan 1 collaboration

Eric Franzosa 1 collaboration

Cristina Menni 1 collaboration

Alessia Visconti 1 collaboration

Federica Pinto 1 collaboration

Curtis Huttenhower 1 collaboration

Hiroaki Kitano 1 collaboration

Takuji Yamada 1 collaboration

Ilaria Bonuzzi 1 collaboration

Lorenzo Lucchetta 1 collaboration

Federica Esposito 1 collaboration

Mariangela Lupo 1 collaboration

Alberto Auricchio 1 collaboration

Andrea Bianchi 1 collaboration

Alessandro Umbach 1 collaboration

Mégane Brusson 1 collaboration

Giacomo Frati 1 collaboration

Kalina Aleksandra Badowska 1 collaboration

Daniele Arosio 1 collaboration

Liesbeth De Keersmaecker 1 collaboration

Daniela Guidone 1 collaboration

Martina Buccirossi 1 collaboration

Luis J V Galietta 1 collaboration

Giulia Vittoria Ruta 1 collaboration

Eyemen Kheir 1 collaboration

Michele Domenico Gentile 1 collaboration

Mattijs Bulcaen 1 collaboration

Phéline Kortleven 1 collaboration

Ronald B Liu 1 collaboration

Elise Dreano 1 collaboration

Mairead Kelly 1 collaboration

Sam Thierie 1 collaboration

Maxime Smits 1 collaboration

Aurelie Hatton 1 collaboration

Benoit Chevalier 1 collaboration

Xavier Casadevall I Solvas 1 collaboration

Zeger Debyser 1 collaboration

François Vermeulen 1 collaboration

Rik Gijsbers 1 collaboration

Isabelle Sermet-Gaudelus 1 collaboration