Nicolai Karcher

Affiliations

Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.

ORCID: 0000-0001-7894-8182

Publications (6)

The gut microbiome in solid organ transplantation.

Pediatric transplantation

Avec: Maral Baghai Arassi , Georg Zeller , Nicolai Karcher , Michael Zimmermann , Burkhard Toenshoff

Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly.

Genome biology

Avec: Nicolai Karcher , Eleonora Nigro , Michal Punčochář , Aitor Blanco-Míguez , Matteo Ciciani , Paolo Manghi , Moreno Zolfo , Fabio Cumbo , Serena Manara , Davide Golzato , Anna Cereseto , Manimozhiyan Arumugam , Thi Phuong Nam Bui , Hanne L P Tytgat , Mireia Valles-Colomer , Willem M de Vos , Nicola Segata

Bacterial retrons encode phage-defending tripartite toxin-antitoxin systems.

Nature

Avec: Jacob Bobonis , Karin Mitosch , André Mateus , Nicolai Karcher , George Kritikos , Joel Selkrig , Matylda Zietek , Vivian Monzon , Birgit Pfalz , Sarela Garcia-Santamarina , Marco Galardini , Anna Sueki , Callie Kobayashi , Frank Stein , Alex Bateman , Georg Zeller , Mikhail M Savitski , Johanna R Elfenbein , Helene L Andrews-Polymenis , Athanasios Typas

Variability of strain engraftment and predictability of microbiome composition after fecal microbiota transplantation across different diseases.

Nature medicine

Avec: Gianluca Ianiro , Michal Punčochář , Nicolai Karcher , Serena Porcari , Federica Armanini , Francesco Asnicar , Francesco Beghini , Aitor Blanco-Míguez , Fabio Cumbo , Paolo Manghi , Federica Pinto , Luca Masucci , Gianluca Quaranta , Silvia De Giorgi , Giusi Desirè Sciumè , Stefano Bibbò , Federica Del Chierico , Lorenza Putignani , Maurizio Sanguinetti , Antonio Gasbarrini , Mireia Valles-Colomer , Giovanni Cammarota , Nicola Segata

Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle.

Cell

Avec: Edoardo Pasolli , Francesco Asnicar , Serena Manara , Moreno Zolfo , Nicolai Karcher , Federica Armanini , Francesco Beghini , Paolo Manghi , Adrian Tett , Paolo Ghensi , Maria Carmen Collado , Benjamin L Rice , Casey DuLong , Xochitl C Morgan , Christopher D Golden , Christopher Quince , Curtis Huttenhower , Nicola Segata

Sulfoquinovose is a select nutrient of prominent bacteria and a source of hydrogen sulfide in the human gut.

The ISME journal

Avec: Buck T Hanson , K Dimitri Kits , Jessica Löffler , Anna G Burrichter , Alexander Fiedler , Karin Denger , Benjamin Frommeyer , Craig W Herbold , Thomas Rattei , Nicolai Karcher , Nicola Segata , David Schleheck , Alexander Loy

Réseau de co-auteurs

Nicola Segata 4 collaborations

Paolo Manghi 3 collaborations

Georg Zeller 2 collaborations

Michal Punčochář 2 collaborations

Aitor Blanco-Míguez 2 collaborations

Moreno Zolfo 2 collaborations

Fabio Cumbo 2 collaborations

Serena Manara 2 collaborations

Mireia Valles-Colomer 2 collaborations

Federica Armanini 2 collaborations

Francesco Asnicar 2 collaborations

Francesco Beghini 2 collaborations

Maral Baghai Arassi 1 collaboration

Michael Zimmermann 1 collaboration

Burkhard Toenshoff 1 collaboration

Eleonora Nigro 1 collaboration

Matteo Ciciani 1 collaboration

Davide Golzato 1 collaboration

Anna Cereseto 1 collaboration

Manimozhiyan Arumugam 1 collaboration

Thi Phuong Nam Bui 1 collaboration

Hanne L P Tytgat 1 collaboration

Willem M de Vos 1 collaboration

Jacob Bobonis 1 collaboration

Karin Mitosch 1 collaboration

André Mateus 1 collaboration

George Kritikos 1 collaboration

Joel Selkrig 1 collaboration

Matylda Zietek 1 collaboration

Vivian Monzon 1 collaboration

Birgit Pfalz 1 collaboration

Sarela Garcia-Santamarina 1 collaboration

Marco Galardini 1 collaboration

Anna Sueki 1 collaboration

Callie Kobayashi 1 collaboration

Frank Stein 1 collaboration

Alex Bateman 1 collaboration

Mikhail M Savitski 1 collaboration

Johanna R Elfenbein 1 collaboration

Helene L Andrews-Polymenis 1 collaboration

Athanasios Typas 1 collaboration

Gianluca Ianiro 1 collaboration

Serena Porcari 1 collaboration

Federica Pinto 1 collaboration

Luca Masucci 1 collaboration

Gianluca Quaranta 1 collaboration

Silvia De Giorgi 1 collaboration

Giusi Desirè Sciumè 1 collaboration

Stefano Bibbò 1 collaboration

Federica Del Chierico 1 collaboration

Lorenza Putignani 1 collaboration

Maurizio Sanguinetti 1 collaboration

Antonio Gasbarrini 1 collaboration

Giovanni Cammarota 1 collaboration

Edoardo Pasolli 1 collaboration

Adrian Tett 1 collaboration

Paolo Ghensi 1 collaboration

Maria Carmen Collado 1 collaboration

Benjamin L Rice 1 collaboration

Casey DuLong 1 collaboration

Xochitl C Morgan 1 collaboration

Christopher D Golden 1 collaboration

Christopher Quince 1 collaboration

Curtis Huttenhower 1 collaboration

Buck T Hanson 1 collaboration

K Dimitri Kits 1 collaboration

Jessica Löffler 1 collaboration

Anna G Burrichter 1 collaboration

Alexander Fiedler 1 collaboration

Karin Denger 1 collaboration

Benjamin Frommeyer 1 collaboration

Craig W Herbold 1 collaboration

Thomas Rattei 1 collaboration

David Schleheck 1 collaboration

Alexander Loy 1 collaboration