Matthew Carlile

Affiliations

School of Life Sciences, University of Nottingham, Nottingham, UK.

Publications (12)

Retrospective screening of routine respiratory samples revealed undetected community transmission and missed intervention opportunities for SARS-CoV-2 in the United Kingdom.

The Journal of general virology

Avec: Joseph G Chappell , Theocharis Tsoleridis , Gemma Clark , Louise Berry , Nadine Holmes , Christopher Moore , Matthew Carlile , Fei Sang , Bisrat J Debebe , Victoria Wright , William L Irving , Brian J Thomson , Timothy C J Boswell , Iona Willingham , Amelia Joseph , Wendy Smith , Manjinder Khakh , Vicki M Fleming , Michelle M Lister , Hannah C Howson-Wells , Edward C Holmes , Matthew W Loose , Jonathan K Ball , C Patrick McClure , On Behalf Of The Cog-Uk Consortium

Paternal low protein diet perturbs inter-generational metabolic homeostasis in a tissue-specific manner in mice.

Communications biology

Avec: Hannah L Morgan , Samuel Furse , Irundika H K Dias , Kiran Shabir , Marcos Castellanos , Iqbal Khan , Sean T May , Nadine Holmes , Matthew Carlile , Fei Sang , Victoria Wright , Albert Koulman , Adam J Watkins

Evaluation of variant calling algorithms for wastewater-based epidemiology using mixed populations of SARS-CoV-2 variants in synthetic and wastewater samples.

Microbial genomics

Avec: Irene Bassano , Vinoy K Ramachandran , Mohammad S Khalifa , Chris J Lilley , Mathew R Brown , Ronny van Aerle , Hubert Denise , William Rowe , Airey George , Edward Cairns , Claudia Wierzbicki , Natalie D Pickwell , Matthew Carlile , Nadine Holmes , Alexander Payne , Matthew Loose , Terry A Burke , Steve Paterson , Matthew J Wade , Jasmine M S Grimsley

Development and Prospective Validation of a Deep Learning Algorithm for Predicting Need for Mechanical Ventilation.

Chest

Avec: Supreeth P Shashikumar , Gabriel Wardi , Paulina Paul , Morgan Carlile , Laura N Brenner , Kathryn A Hibbert , Crystal M North , Shibani S Mukerji , Gregory K Robbins , Yu-Ping Shao , M Brandon Westover , Shamim Nemati , Atul Malhotra

Hypoxia signatures in closed-circuit rebreather divers.

Diving and hyperbaric medicine

Avec: Daniel Popa , Craig Kutz , Morgan Carlile , Kaighley Brett , Esteban A Moya , Frank Powell , Peter Witucki , Richard Sadler , Charlotte Sadler

Development and Prospective Validation of a Transparent Deep Learning Algorithm for Predicting Need for Mechanical Ventilation.

medRxiv : the preprint server for health sciences

Avec: Supreeth P Shashikumar , Gabriel Wardi , Paulina Paul , Morgan Carlile , Laura N Brenner , Kathryn A Hibbert , Crystal M North , Shibani Mukerji , Gregory Robbins , Yu-Ping Shao , Atul Malhotra , Brandon Westover , Shamim Nemati

Predicting progression to septic shock in the emergency department using an externally generalizable machine learning algorithm.

medRxiv : the preprint server for health sciences

Avec: Gabriel Wardi , Morgan Carlile , Andre Holder , Supreeth Shashikumar , Stephen R Hayden , Shamim Nemati

Deployment of artificial intelligence for radiographic diagnosis of COVID-19 pneumonia in the emergency department.

Journal of the American College of Emergency Physicians open

Avec: Morgan Carlile , Brian Hurt , Albert Hsiao , Michael Hogarth , Christopher A Longhurst , Christian Dameff

Predicting Progression to Septic Shock in the Emergency Department Using an Externally Generalizable Machine-Learning Algorithm.

Annals of emergency medicine

Avec: Gabriel Wardi , Morgan Carlile , Andre Holder , Supreeth Shashikumar , Stephen R Hayden , Shamim Nemati

A framework for real-time monitoring, analysis and adaptive sampling of viral amplicon nanopore sequencing.

Frontiers in genetics

Avec: Rory Munro , Nadine Holmes , Christopher Moore , Matthew Carlile , Alexander Payne , John R Tyson , Thomas Williams , Christopher Alder , Luke B Snell , Gaia Nebbia , Roberto Santos , Matt Loose

Utility of wastewater genomic surveillance compared to clinical surveillance to track the spread of the SARS-CoV-2 Omicron variant across England.

Water research

Avec: Franziska S Brunner , Alexander Payne , Edward Cairns , George Airey , Richard Gregory , Natalie D Pickwell , Myles Wilson , Matthew Carlile , Nadine Holmes , Verity Hill , Harry Child , Jasmine Tomlinson , Suhel Ahmed , Hubert Denise , William Rowe , Jacob Frazer , Ronny van Aerle , Nicholas Evens , Jonathan Porter , Auteur inconnu , Kate Templeton , Aaron R Jeffries , Matt Loose , Steve Paterson

Impact of whole-genome duplications on structural variant evolution in Cochlearia.

Nature communications

Avec: Tuomas Hämälä , Christopher Moore , Laura Cowan , Matthew Carlile , David Gopaulchan , Marie K Brandrud , Siri Birkeland , Matthew Loose , Filip Kolář , Marcus A Koch , Levi Yant

Réseau de co-auteurs

Morgan Carlile 6 collaborations

Nadine Holmes 5 collaborations

Gabriel Wardi 4 collaborations

Shamim Nemati 4 collaborations

Christopher Moore 3 collaborations

Alexander Payne 3 collaborations

Fei Sang 2 collaborations

Victoria Wright 2 collaborations

Ronny van Aerle 2 collaborations

Hubert Denise 2 collaborations

William Rowe 2 collaborations

Edward Cairns 2 collaborations

Natalie D Pickwell 2 collaborations

Matthew Loose 2 collaborations

Steve Paterson 2 collaborations

Supreeth P Shashikumar 2 collaborations

Paulina Paul 2 collaborations

Laura N Brenner 2 collaborations

Kathryn A Hibbert 2 collaborations

Crystal M North 2 collaborations

Yu-Ping Shao 2 collaborations

Atul Malhotra 2 collaborations

Andre Holder 2 collaborations

Supreeth Shashikumar 2 collaborations

Stephen R Hayden 2 collaborations

Matt Loose 2 collaborations

Joseph G Chappell 1 collaboration

Theocharis Tsoleridis 1 collaboration

Gemma Clark 1 collaboration

Louise Berry 1 collaboration

Bisrat J Debebe 1 collaboration

William L Irving 1 collaboration

Brian J Thomson 1 collaboration

Timothy C J Boswell 1 collaboration

Iona Willingham 1 collaboration

Amelia Joseph 1 collaboration

Wendy Smith 1 collaboration

Manjinder Khakh 1 collaboration

Vicki M Fleming 1 collaboration

Michelle M Lister 1 collaboration

Hannah C Howson-Wells 1 collaboration

Edward C Holmes 1 collaboration

Matthew W Loose 1 collaboration

Jonathan K Ball 1 collaboration

C Patrick McClure 1 collaboration

None On Behalf Of The Cog-Uk Consortium 1 collaboration

Hannah L Morgan 1 collaboration

Samuel Furse 1 collaboration

Irundika H K Dias 1 collaboration

Kiran Shabir 1 collaboration

Marcos Castellanos 1 collaboration

Iqbal Khan 1 collaboration

Sean T May 1 collaboration

Albert Koulman 1 collaboration

Adam J Watkins 1 collaboration

Irene Bassano 1 collaboration

Vinoy K Ramachandran 1 collaboration

Mohammad S Khalifa 1 collaboration

Chris J Lilley 1 collaboration

Mathew R Brown 1 collaboration

Airey George 1 collaboration

Claudia Wierzbicki 1 collaboration

Terry A Burke 1 collaboration

Matthew J Wade 1 collaboration

Jasmine M S Grimsley 1 collaboration

Shibani S Mukerji 1 collaboration

Gregory K Robbins 1 collaboration

M Brandon Westover 1 collaboration

Daniel Popa 1 collaboration

Craig Kutz 1 collaboration

Kaighley Brett 1 collaboration

Esteban A Moya 1 collaboration

Frank Powell 1 collaboration

Peter Witucki 1 collaboration

Richard Sadler 1 collaboration

Charlotte Sadler 1 collaboration

Shibani Mukerji 1 collaboration

Gregory Robbins 1 collaboration

Brandon Westover 1 collaboration

Brian Hurt 1 collaboration

Albert Hsiao 1 collaboration

Michael Hogarth 1 collaboration

Christopher A Longhurst 1 collaboration

Christian Dameff 1 collaboration

Rory Munro 1 collaboration

John R Tyson 1 collaboration

Thomas Williams 1 collaboration

Christopher Alder 1 collaboration

Luke B Snell 1 collaboration

Gaia Nebbia 1 collaboration

Roberto Santos 1 collaboration

Franziska S Brunner 1 collaboration

George Airey 1 collaboration

Richard Gregory 1 collaboration

Myles Wilson 1 collaboration

Verity Hill 1 collaboration

Harry Child 1 collaboration

Jasmine Tomlinson 1 collaboration

Suhel Ahmed 1 collaboration

Jacob Frazer 1 collaboration

Nicholas Evens 1 collaboration

Jonathan Porter 1 collaboration

None None 1 collaboration

Kate Templeton 1 collaboration

Aaron R Jeffries 1 collaboration

Tuomas Hämälä 1 collaboration

Laura Cowan 1 collaboration

David Gopaulchan 1 collaboration

Marie K Brandrud 1 collaboration

Siri Birkeland 1 collaboration

Filip Kolář 1 collaboration

Marcus A Koch 1 collaboration

Levi Yant 1 collaboration