Morgan Carlile

Affiliations

Department of Emergency Medicine, University of California, San Diego, La Jolla, CA.

Publications (12)

Retrospective screening of routine respiratory samples revealed undetected community transmission and missed intervention opportunities for SARS-CoV-2 in the United Kingdom.

The Journal of general virology

Avec: Joseph G Chappell , Theocharis Tsoleridis , Gemma Clark , Louise Berry , Nadine Holmes , Christopher Moore , Matthew Carlile , Fei Sang , Bisrat J Debebe , Victoria Wright , William L Irving , Brian J Thomson , Timothy C J Boswell , Iona Willingham , Amelia Joseph , Wendy Smith , Manjinder Khakh , Vicki M Fleming , Michelle M Lister , Hannah C Howson-Wells , Edward C Holmes , Matthew W Loose , Jonathan K Ball , C Patrick McClure , On Behalf Of The Cog-Uk Consortium

Paternal low protein diet perturbs inter-generational metabolic homeostasis in a tissue-specific manner in mice.

Communications biology

Avec: Hannah L Morgan , Samuel Furse , Irundika H K Dias , Kiran Shabir , Marcos Castellanos , Iqbal Khan , Sean T May , Nadine Holmes , Matthew Carlile , Fei Sang , Victoria Wright , Albert Koulman , Adam J Watkins

Evaluation of variant calling algorithms for wastewater-based epidemiology using mixed populations of SARS-CoV-2 variants in synthetic and wastewater samples.

Microbial genomics

Avec: Irene Bassano , Vinoy K Ramachandran , Mohammad S Khalifa , Chris J Lilley , Mathew R Brown , Ronny van Aerle , Hubert Denise , William Rowe , Airey George , Edward Cairns , Claudia Wierzbicki , Natalie D Pickwell , Matthew Carlile , Nadine Holmes , Alexander Payne , Matthew Loose , Terry A Burke , Steve Paterson , Matthew J Wade , Jasmine M S Grimsley

Development and Prospective Validation of a Deep Learning Algorithm for Predicting Need for Mechanical Ventilation.

Chest

Avec: Supreeth P Shashikumar , Gabriel Wardi , Paulina Paul , Morgan Carlile , Laura N Brenner , Kathryn A Hibbert , Crystal M North , Shibani S Mukerji , Gregory K Robbins , Yu-Ping Shao , M Brandon Westover , Shamim Nemati , Atul Malhotra

Hypoxia signatures in closed-circuit rebreather divers.

Diving and hyperbaric medicine

Avec: Daniel Popa , Craig Kutz , Morgan Carlile , Kaighley Brett , Esteban A Moya , Frank Powell , Peter Witucki , Richard Sadler , Charlotte Sadler

Development and Prospective Validation of a Transparent Deep Learning Algorithm for Predicting Need for Mechanical Ventilation.

medRxiv : the preprint server for health sciences

Avec: Supreeth P Shashikumar , Gabriel Wardi , Paulina Paul , Morgan Carlile , Laura N Brenner , Kathryn A Hibbert , Crystal M North , Shibani Mukerji , Gregory Robbins , Yu-Ping Shao , Atul Malhotra , Brandon Westover , Shamim Nemati

Predicting progression to septic shock in the emergency department using an externally generalizable machine learning algorithm.

medRxiv : the preprint server for health sciences

Avec: Gabriel Wardi , Morgan Carlile , Andre Holder , Supreeth Shashikumar , Stephen R Hayden , Shamim Nemati

Deployment of artificial intelligence for radiographic diagnosis of COVID-19 pneumonia in the emergency department.

Journal of the American College of Emergency Physicians open

Avec: Morgan Carlile , Brian Hurt , Albert Hsiao , Michael Hogarth , Christopher A Longhurst , Christian Dameff

Predicting Progression to Septic Shock in the Emergency Department Using an Externally Generalizable Machine-Learning Algorithm.

Annals of emergency medicine

Avec: Gabriel Wardi , Morgan Carlile , Andre Holder , Supreeth Shashikumar , Stephen R Hayden , Shamim Nemati

A framework for real-time monitoring, analysis and adaptive sampling of viral amplicon nanopore sequencing.

Frontiers in genetics

Avec: Rory Munro , Nadine Holmes , Christopher Moore , Matthew Carlile , Alexander Payne , John R Tyson , Thomas Williams , Christopher Alder , Luke B Snell , Gaia Nebbia , Roberto Santos , Matt Loose

Utility of wastewater genomic surveillance compared to clinical surveillance to track the spread of the SARS-CoV-2 Omicron variant across England.

Water research

Avec: Franziska S Brunner , Alexander Payne , Edward Cairns , George Airey , Richard Gregory , Natalie D Pickwell , Myles Wilson , Matthew Carlile , Nadine Holmes , Verity Hill , Harry Child , Jasmine Tomlinson , Suhel Ahmed , Hubert Denise , William Rowe , Jacob Frazer , Ronny van Aerle , Nicholas Evens , Jonathan Porter , Auteur inconnu , Kate Templeton , Aaron R Jeffries , Matt Loose , Steve Paterson

Impact of whole-genome duplications on structural variant evolution in Cochlearia.

Nature communications

Avec: Tuomas Hämälä , Christopher Moore , Laura Cowan , Matthew Carlile , David Gopaulchan , Marie K Brandrud , Siri Birkeland , Matthew Loose , Filip Kolář , Marcus A Koch , Levi Yant

Réseau de co-auteurs

Matthew Carlile 6 collaborations

Nadine Holmes 5 collaborations

Gabriel Wardi 4 collaborations

Shamim Nemati 4 collaborations

Christopher Moore 3 collaborations

Alexander Payne 3 collaborations

Fei Sang 2 collaborations

Victoria Wright 2 collaborations

Ronny van Aerle 2 collaborations

Hubert Denise 2 collaborations

William Rowe 2 collaborations

Edward Cairns 2 collaborations

Natalie D Pickwell 2 collaborations

Matthew Loose 2 collaborations

Steve Paterson 2 collaborations

Supreeth P Shashikumar 2 collaborations

Paulina Paul 2 collaborations

Laura N Brenner 2 collaborations

Kathryn A Hibbert 2 collaborations

Crystal M North 2 collaborations

Yu-Ping Shao 2 collaborations

Atul Malhotra 2 collaborations

Andre Holder 2 collaborations

Supreeth Shashikumar 2 collaborations

Stephen R Hayden 2 collaborations

Matt Loose 2 collaborations

Joseph G Chappell 1 collaboration

Theocharis Tsoleridis 1 collaboration

Gemma Clark 1 collaboration

Louise Berry 1 collaboration

Bisrat J Debebe 1 collaboration

William L Irving 1 collaboration

Brian J Thomson 1 collaboration

Timothy C J Boswell 1 collaboration

Iona Willingham 1 collaboration

Amelia Joseph 1 collaboration

Wendy Smith 1 collaboration

Manjinder Khakh 1 collaboration

Vicki M Fleming 1 collaboration

Michelle M Lister 1 collaboration

Hannah C Howson-Wells 1 collaboration

Edward C Holmes 1 collaboration

Matthew W Loose 1 collaboration

Jonathan K Ball 1 collaboration

C Patrick McClure 1 collaboration

None On Behalf Of The Cog-Uk Consortium 1 collaboration

Hannah L Morgan 1 collaboration

Samuel Furse 1 collaboration

Irundika H K Dias 1 collaboration

Kiran Shabir 1 collaboration

Marcos Castellanos 1 collaboration

Iqbal Khan 1 collaboration

Sean T May 1 collaboration

Albert Koulman 1 collaboration

Adam J Watkins 1 collaboration

Irene Bassano 1 collaboration

Vinoy K Ramachandran 1 collaboration

Mohammad S Khalifa 1 collaboration

Chris J Lilley 1 collaboration

Mathew R Brown 1 collaboration

Airey George 1 collaboration

Claudia Wierzbicki 1 collaboration

Terry A Burke 1 collaboration

Matthew J Wade 1 collaboration

Jasmine M S Grimsley 1 collaboration

Shibani S Mukerji 1 collaboration

Gregory K Robbins 1 collaboration

M Brandon Westover 1 collaboration

Daniel Popa 1 collaboration

Craig Kutz 1 collaboration

Kaighley Brett 1 collaboration

Esteban A Moya 1 collaboration

Frank Powell 1 collaboration

Peter Witucki 1 collaboration

Richard Sadler 1 collaboration

Charlotte Sadler 1 collaboration

Shibani Mukerji 1 collaboration

Gregory Robbins 1 collaboration

Brandon Westover 1 collaboration

Brian Hurt 1 collaboration

Albert Hsiao 1 collaboration

Michael Hogarth 1 collaboration

Christopher A Longhurst 1 collaboration

Christian Dameff 1 collaboration

Rory Munro 1 collaboration

John R Tyson 1 collaboration

Thomas Williams 1 collaboration

Christopher Alder 1 collaboration

Luke B Snell 1 collaboration

Gaia Nebbia 1 collaboration

Roberto Santos 1 collaboration

Franziska S Brunner 1 collaboration

George Airey 1 collaboration

Richard Gregory 1 collaboration

Myles Wilson 1 collaboration

Verity Hill 1 collaboration

Harry Child 1 collaboration

Jasmine Tomlinson 1 collaboration

Suhel Ahmed 1 collaboration

Jacob Frazer 1 collaboration

Nicholas Evens 1 collaboration

Jonathan Porter 1 collaboration

None None 1 collaboration

Kate Templeton 1 collaboration

Aaron R Jeffries 1 collaboration

Tuomas Hämälä 1 collaboration

Laura Cowan 1 collaboration

David Gopaulchan 1 collaboration

Marie K Brandrud 1 collaboration

Siri Birkeland 1 collaboration

Filip Kolář 1 collaboration

Marcus A Koch 1 collaboration

Levi Yant 1 collaboration