N Geifman

Affiliations

The Manchester Molecular Pathology Innovation Centre, University of Manchester, Manchester, UK.
Centre for Health Informatics, Division of Informatics, Imaging and Data Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, UK.

ORCID: 0000-0003-2956-6676

Publications (41)

Proteomics and Informatics for Understanding Phases and Identifying Biomarkers in COVID-19 Disease.

Journal of proteome research

Avec: Anthony D Whetton , George W Preston , Semira Abubeker , Nophar Geifman

The use of missing values in proteomic data-independent acquisition mass spectrometry to enable disease activity discrimination.

Bioinformatics (Oxford, England)

Avec: Kathryn A McGurk , Arianna Dagliati , Davide Chiasserini , Dave Lee , Darren Plant , Ivona Baricevic-Jones , Janet Kelsall , Rachael Eineman , Rachel Reed , Bethany Geary , Richard D Unwin , Anna Nicolaou , Bernard D Keavney , Anne Barton , Anthony D Whetton , Nophar Geifman

A Prostate Cancer Proteomics Database for SWATH-MS Based Protein Quantification.

Cancers

Avec: Ammara Muazzam , Davide Chiasserini , Janet Kelsall , Nophar Geifman , Anthony D Whetton , Paul A Townsend

Patient-reported wellbeing and clinical disease measures over time captured by multivariate trajectories of disease activity in individuals with juvenile idiopathic arthritis in the UK: a multicentre prospective longitudinal study.

The Lancet. Rheumatology

Avec: Stephanie J W Shoop-Worrall , Kimme L Hyrich , Lucy R Wedderburn , Wendy Thomson , Nophar Geifman , Auteur inconnu

Identifying developments over a decade in the digital health and telemedicine landscape in the UK using quantitative text mining.

Frontiers in digital health

Avec: Nophar Geifman , Jo Armes , Anthony D Whetton

Detection of endometrial cancer in cervico-vaginal fluid and blood plasma: leveraging proteomics and machine learning for biomarker discovery.

EBioMedicine

Avec: Kelechi Njoku , Andrew Pierce , Davide Chiasserini , Bethany Geary , Amy E Campbell , Janet Kelsall , Rachel Reed , Nophar Geifman , Anthony D Whetton , Emma J Crosbie

Challenges in Lipidomics Biomarker Identification: Avoiding the Pitfalls and Improving Reproducibility.

Metabolites

Avec: Johanna von Gerichten , Kyle Saunders , Melanie J Bailey , Lee A Gethings , Anthony Onoja , Nophar Geifman , Matt Spick

Clinical trial data reuse - overcoming complexities in trial design and data sharing.

Trials

Avec: Toby Wilkinson , Siddharth Sinha , Niels Peek , Nophar Geifman

Latent Class Trajectory Modeling of 2-Component Disease Activity Score in 28 Joints Identifies Multiple Rheumatoid Arthritis Phenotypes of Response to Biologic Disease-Modifying Antirheumatic Drugs.

Arthritis & rheumatology (Hoboken, N.J.)

Avec: Arianna Dagliati , Darren Plant , Nisha Nair , Meghna Jani , Beatrice Amico , Niels Peek , Ann W Morgan , John Isaacs , Anthony G Wilson , Kimme L Hyrich , Nophar Geifman , Anne Barton , Auteur inconnu

Sex and APOE genotype differences related to statin use in the aging population.

Alzheimer's & dementia (New York, N. Y.)

Avec: Arianna Dagliati , Niels Peek , Roberta Diaz Brinton , Nophar Geifman

Weight Changes in Type 2 Diabetes and Cancer Risk: A Latent Class Trajectory Model Study.

Obesity facts

Avec: Britt W Jensen , Charlotte Watson , Nophar Geifman , Jennifer L Baker , Ellena Badrick , Andrew G Renehan

Data-independent acquisition mass spectrometry in severe rheumatic heart disease (RHD) identifies a proteomic signature showing ongoing inflammation and effectively classifying RHD cases.

Clinical proteomics

Avec: M Taariq Salie , Jing Yang , Carlos R Ramírez Medina , Liesl J Zühlke , Chishala Chishala , Mpiko Ntsekhe , Bernard Gitura , Stephen Ogendo , Emmy Okello , Peter Lwabi , John Musuku , Agnes Mtaja , Christopher Hugo-Hamman , Ahmed El-Sayed , Albertino Damasceno , Ana Mocumbi , Fidelia Bode-Thomas , Christopher Yilgwan , Ganiyu A Amusa , Esin Nkereuwem , Gasnat Shaboodien , Rachael Da Silva , Dave Chi Hoo Lee , Simon Frain , Nophar Geifman , Anthony D Whetton , Bernard Keavney , Mark E Engel , Auteur inconnu

Latent class trajectory modelling: impact of changes in model specification.

American journal of translational research

Avec: Charlotte Watson , Nophar Geifman , Andrew G Renehan

Proteomic analysis identifies subgroups of patients with active systemic lupus erythematosus.

Clinical proteomics

Avec: Kevin Y C Su , John A Reynolds , Rachel Reed , Rachael Da Silva , Janet Kelsall , Ivona Baricevic-Jones , David Lee , Anthony D Whetton , Nophar Geifman , Neil McHugh , Ian N Bruce , Auteur inconnu

Probabilistic Approaches to Overcome Content Heterogeneity in Data Integration: A Study Case in Systematic Lupus Erythematosus.

Studies in health technology and informatics

Avec: Alexia Sampri , Nophar Geifman , Helen Le Sueur , Patrick Doherty , Philip Couch , Ian Bruce , Niels Peek , Auteur inconnu

Mining post-surgical care processes in breast cancer patients.

Artificial intelligence in medicine

Avec: Lorenzo Chiudinelli , Arianna Dagliati , Valentina Tibollo , Sara Albasini , Nophar Geifman , Niels Peek , John H Holmes , Fabio Corsi , Riccardo Bellazzi , Lucia Sacchi

Integrated Multi-Omics Analyses in Oncology: A Review of Machine Learning Methods and Tools.

Frontiers in oncology

Avec: Giovanna Nicora , Francesca Vitali , Arianna Dagliati , Nophar Geifman , Riccardo Bellazzi

Defining trajectories of response in patients with psoriasis treated with biologic therapies.

The British journal of dermatology

Avec: N Geifman , N Azadbakht , J Zeng , T Wilkinson , N Dand , I Buchan , D Stocken , P Di Meglio , R B Warren , J N Barker , N J Reynolds , M R Barnes , C H Smith , C E M Griffiths , N Peek , Auteur inconnu

Associations of specific-age and decade recall body mass index trajectories with obesity-related cancer.

BMC cancer

Avec: Charlotte Watson , Andrew G Renehan , Nophar Geifman

Multi-Omics Reveals Mechanisms of Partial Modulation of COVID-19 Dysregulation by Glucocorticoid Treatment.

International journal of molecular sciences

Avec: Matt Spick , Amy Campbell , Ivona Baricevic-Jones , Johanna von Gerichten , Holly-May Lewis , Cecile F Frampas , Katie Longman , Alexander Stewart , Deborah Dunn-Walters , Debra J Skene , Nophar Geifman , Anthony D Whetton , Melanie J Bailey

A Novel Blood Proteomic Signature for Prostate Cancer.

Cancers

Avec: Ammara Muazzam , Matt Spick , Olivier N F Cexus , Bethany Geary , Fowz Azhar , Hardev Pandha , Agnieszka Michael , Rachel Reed , Sarah Lennon , Lee A Gethings , Robert S Plumb , Anthony D Whetton , Nophar Geifman , Paul A Townsend

Longitudinal trajectories of severe wheeze exacerbations from infancy to school age and their association with early-life risk factors and late asthma outcomes.

Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology

Avec: Matea Deliu , Sara Fontanella , Sadia Haider , Matthew Sperrin , Nophar Geifman , Clare Murray , Angela Simpson , Adnan Custovic

Statin therapy and risk of Alzheimer's and age-related neurodegenerative diseases.

Alzheimer's & dementia (New York, N. Y.)

Avec: Georgina Torrandell-Haro , Gregory L Branigan , Francesca Vitali , Nophar Geifman , Julie M Zissimopoulos , Roberta Diaz Brinton

Using topological data analysis and pseudo time series to infer temporal phenotypes from electronic health records.

Artificial intelligence in medicine

Avec: Arianna Dagliati , Nophar Geifman , Niels Peek , John H Holmes , Lucia Sacchi , Riccardo Bellazzi , Seyed Erfan Sajjadi , Allan Tucker

Nothing about us without us: involving patient collaborators for machine learning applications in rheumatology.

Annals of the rheumatic diseases

Avec: Stephanie J W Shoop-Worrall , Katherine Cresswell , Imogen Bolger , Beth Dillon , Kimme L Hyrich , Nophar Geifman , Auteur inconnu

Multi-omic diagnostics of prostate cancer in the presence of benign prostatic hyperplasia.

Heliyon

Avec: Matt Spick , Ammara Muazzam , Hardev Pandha , Agnieszka Michael , Lee A Gethings , Christopher J Hughes , Nyasha Munjoma , Robert S Plumb , Ian D Wilson , Anthony D Whetton , Paul A Townsend , Nophar Geifman

Viral PIC-pocketing: RSV sequestration of translational preinitiation complexes into bi-phasic biomolecular condensates.

Journal of virology

Avec: Fatoumatta Jobe , James T Kelly , Jennifer Simpson , Joanna Wells , Stuart D Armstrong , Matt Spick , Emily Lacey , Leanne Logan , Nophar Geifman , Philippa Hawes , Dalan Bailey

Associations of Diet with Health Outcomes in the UK Biobank: A Systematic Review.

Nutrients

Avec: Hana F Navratilova , Susan Lanham-New , Anthony D Whetton , Nophar Geifman

Evaluation of a proteomic signature coupled with the kidney failure risk equation in predicting end stage kidney disease in a chronic kidney disease cohort.

Clinical proteomics

Avec: Carlos Raúl Ramírez Medina , Ibrahim Ali , Ivona Baricevic-Jones , Moin A Saleem , Anthony D Whetton , Philip A Kalra , Nophar Geifman

A Dashboard for Latent Class Trajectory Modeling: Application in Rheumatoid Arthritis.

Studies in health technology and informatics

Avec: Beatrice Amico , Arianna Dagliati , Darren Plant , Anne Barton , Niels Peek , Nophar Geifman

Multimorbidity states associated with higher mortality rates in organ dysfunction and sepsis: a data-driven analysis in critical care.

Critical care (London, England)

Avec: Zsolt Zador , Alexander Landry , Michael D Cusimano , Nophar Geifman

A consideration of publication-derived immune-related associations in Coronavirus and related lung damaging diseases.

Journal of translational medicine

Avec: Nophar Geifman , Anthony D Whetton

The challenges in data integration - heterogeneity and complexity in clinical trials and patient registries of Systemic Lupus Erythematosus.

BMC medical research methodology

Avec: Helen Le Sueur , Ian N Bruce , Nophar Geifman , Auteur inconnu

OptiMissP: A dashboard to assess missingness in proteomic data-independent acquisition mass spectrometry.

PloS one

Avec: Angelica Arioli , Arianna Dagliati , Bethany Geary , Niels Peek , Philip A Kalra , Anthony D Whetton , Nophar Geifman

Application of SWATH mass spectrometry in the identification of circulating proteins does not predict future weight gain in early psychosis.

Clinical proteomics

Avec: Adrian Heald , Narges Azadbakht , Bethany Geary , Silke Conen , Helene Fachim , Dave Chi Hoo Lee , Nophar Geifman , Sanam Farman , Oliver Howes , Anthony Whetton , Bill Deakin

Distinct patterns of disease activity over time in patients with active SLE revealed using latent class trajectory models.

Arthritis research & therapy

Avec: John A Reynolds , Jennifer Prattley , Nophar Geifman , Mark Lunt , Caroline Gordon , Ian N Bruce , Auteur inconnu

Proteomic signature associated with chronic kidney disease (CKD) progression identified by data-independent acquisition mass spectrometry.

Clinical proteomics

Avec: Carlos R Ramírez Medina , Ibrahim Ali , Ivona Baricevic-Jones , Aghogho Odudu , Moin A Saleem , Anthony D Whetton , Philip A Kalra , Nophar Geifman

Towards stratified treatment of JIA: machine learning identifies subtypes in response to methotrexate from four UK cohorts.

EBioMedicine

Avec: Stephanie J W Shoop-Worrall , Saskia Lawson-Tovey , Lucy R Wedderburn , Kimme L Hyrich , Nophar Geifman , Auteur inconnu

The successes and challenges of harmonising juvenile idiopathic arthritis (JIA) datasets to create a large-scale JIA data resource.

Pediatric rheumatology online journal

Avec: Saskia Lawson-Tovey , Samantha Louise Smith , Nophar Geifman , Stephanie Shoop-Worrall , Sandra Ng , Michael R Barnes , Lucy R Wedderburn , Kimme L Hyrich , Auteur inconnu

Meta-Analysis of COVID-19 Metabolomics Identifies Variations in Robustness of Biomarkers.

International journal of molecular sciences

Avec: Anthony Onoja , Johanna von Gerichten , Holly-May Lewis , Melanie J Bailey , Debra J Skene , Nophar Geifman , Matt Spick

Artificial intelligence driven definition of food preference endotypes in UK Biobank volunteers is associated with distinctive health outcomes and blood based metabolomic and proteomic profiles.

Journal of translational medicine

Avec: Hana F Navratilova , Anthony D Whetton , Nophar Geifman

Réseau de co-auteurs

Nophar Geifman 40 collaborations

Anthony D Whetton 16 collaborations

None None 11 collaborations

Arianna Dagliati 8 collaborations

Niels Peek 8 collaborations

Matt Spick 6 collaborations

Ivona Baricevic-Jones 5 collaborations

Bethany Geary 5 collaborations

Kimme L Hyrich 5 collaborations

Janet Kelsall 4 collaborations

Rachel Reed 4 collaborations

Davide Chiasserini 3 collaborations

Darren Plant 3 collaborations

Anne Barton 3 collaborations

Ammara Muazzam 3 collaborations

Paul A Townsend 3 collaborations

Stephanie J W Shoop-Worrall 3 collaborations

Lucy R Wedderburn 3 collaborations

Johanna von Gerichten 3 collaborations

Melanie J Bailey 3 collaborations

Lee A Gethings 3 collaborations

Charlotte Watson 3 collaborations

Andrew G Renehan 3 collaborations

Ian N Bruce 3 collaborations

Riccardo Bellazzi 3 collaborations

Philip A Kalra 3 collaborations

Anthony Onoja 2 collaborations

Beatrice Amico 2 collaborations

Roberta Diaz Brinton 2 collaborations

Carlos R Ramírez Medina 2 collaborations

Rachael Da Silva 2 collaborations

Dave Chi Hoo Lee 2 collaborations

John A Reynolds 2 collaborations

Helen Le Sueur 2 collaborations

John H Holmes 2 collaborations

Lucia Sacchi 2 collaborations

Francesca Vitali 2 collaborations

Holly-May Lewis 2 collaborations

Debra J Skene 2 collaborations

Hardev Pandha 2 collaborations

Agnieszka Michael 2 collaborations

Robert S Plumb 2 collaborations

Hana F Navratilova 2 collaborations

Ibrahim Ali 2 collaborations

Moin A Saleem 2 collaborations

Saskia Lawson-Tovey 2 collaborations

George W Preston 1 collaboration

Semira Abubeker 1 collaboration

Kathryn A McGurk 1 collaboration

Dave Lee 1 collaboration

Rachael Eineman 1 collaboration

Richard D Unwin 1 collaboration

Anna Nicolaou 1 collaboration

Bernard D Keavney 1 collaboration

Wendy Thomson 1 collaboration

Jo Armes 1 collaboration

Kelechi Njoku 1 collaboration

Andrew Pierce 1 collaboration

Amy E Campbell 1 collaboration

Emma J Crosbie 1 collaboration

Kyle Saunders 1 collaboration

Toby Wilkinson 1 collaboration

Siddharth Sinha 1 collaboration

Nisha Nair 1 collaboration

Meghna Jani 1 collaboration

Ann W Morgan 1 collaboration

John Isaacs 1 collaboration

Anthony G Wilson 1 collaboration

Britt W Jensen 1 collaboration

Jennifer L Baker 1 collaboration

Ellena Badrick 1 collaboration

M Taariq Salie 1 collaboration

Jing Yang 1 collaboration

Liesl J Zühlke 1 collaboration

Chishala Chishala 1 collaboration

Mpiko Ntsekhe 1 collaboration

Bernard Gitura 1 collaboration

Stephen Ogendo 1 collaboration

Emmy Okello 1 collaboration

Peter Lwabi 1 collaboration

John Musuku 1 collaboration

Agnes Mtaja 1 collaboration

Christopher Hugo-Hamman 1 collaboration

Ahmed El-Sayed 1 collaboration

Albertino Damasceno 1 collaboration

Ana Mocumbi 1 collaboration

Fidelia Bode-Thomas 1 collaboration

Christopher Yilgwan 1 collaboration

Ganiyu A Amusa 1 collaboration

Esin Nkereuwem 1 collaboration

Gasnat Shaboodien 1 collaboration

Simon Frain 1 collaboration

Bernard Keavney 1 collaboration

Mark E Engel 1 collaboration

Kevin Y C Su 1 collaboration

David Lee 1 collaboration

Neil McHugh 1 collaboration

Alexia Sampri 1 collaboration

Patrick Doherty 1 collaboration

Philip Couch 1 collaboration

Ian Bruce 1 collaboration

Lorenzo Chiudinelli 1 collaboration

Valentina Tibollo 1 collaboration

Sara Albasini 1 collaboration

Fabio Corsi 1 collaboration

Giovanna Nicora 1 collaboration

N Azadbakht 1 collaboration

J Zeng 1 collaboration

T Wilkinson 1 collaboration

N Dand 1 collaboration

I Buchan 1 collaboration

D Stocken 1 collaboration

P Di Meglio 1 collaboration

R B Warren 1 collaboration

J N Barker 1 collaboration

N J Reynolds 1 collaboration

M R Barnes 1 collaboration

C H Smith 1 collaboration

C E M Griffiths 1 collaboration

N Peek 1 collaboration

Amy Campbell 1 collaboration

Cecile F Frampas 1 collaboration

Katie Longman 1 collaboration

Alexander Stewart 1 collaboration

Deborah Dunn-Walters 1 collaboration

Olivier N F Cexus 1 collaboration

Fowz Azhar 1 collaboration

Sarah Lennon 1 collaboration

Matea Deliu 1 collaboration

Sara Fontanella 1 collaboration

Sadia Haider 1 collaboration

Matthew Sperrin 1 collaboration

Clare Murray 1 collaboration

Angela Simpson 1 collaboration

Adnan Custovic 1 collaboration

Georgina Torrandell-Haro 1 collaboration

Gregory L Branigan 1 collaboration

Julie M Zissimopoulos 1 collaboration

Seyed Erfan Sajjadi 1 collaboration

Allan Tucker 1 collaboration

Katherine Cresswell 1 collaboration

Imogen Bolger 1 collaboration

Beth Dillon 1 collaboration

Christopher J Hughes 1 collaboration

Nyasha Munjoma 1 collaboration

Ian D Wilson 1 collaboration

Fatoumatta Jobe 1 collaboration

James T Kelly 1 collaboration

Jennifer Simpson 1 collaboration

Joanna Wells 1 collaboration

Stuart D Armstrong 1 collaboration

Emily Lacey 1 collaboration

Leanne Logan 1 collaboration

Philippa Hawes 1 collaboration

Dalan Bailey 1 collaboration

Susan Lanham-New 1 collaboration

Carlos Raúl Ramírez Medina 1 collaboration

Zsolt Zador 1 collaboration

Alexander Landry 1 collaboration

Michael D Cusimano 1 collaboration

Angelica Arioli 1 collaboration

Adrian Heald 1 collaboration

Narges Azadbakht 1 collaboration

Silke Conen 1 collaboration

Helene Fachim 1 collaboration

Sanam Farman 1 collaboration

Oliver Howes 1 collaboration

Anthony Whetton 1 collaboration

Bill Deakin 1 collaboration

Jennifer Prattley 1 collaboration

Mark Lunt 1 collaboration

Caroline Gordon 1 collaboration

Aghogho Odudu 1 collaboration

Samantha Louise Smith 1 collaboration

Stephanie Shoop-Worrall 1 collaboration

Sandra Ng 1 collaboration

Michael R Barnes 1 collaboration