Nicholas Geard

Affiliations

School of Computing and Information Systems, University of Melbourne, Melbourne, VIC 3052, Australia.

Publications (39)

PoLoBag: Polynomial Lasso Bagging for signed gene regulatory network inference from expression data.

Bioinformatics (Oxford, England)

Avec: Gourab Ghosh Roy , Nicholas Geard , Karin Verspoor , Shan He

Modelling the effect of within-host dynamics on the diversity of a multi-strain pathogen.

Journal of theoretical biology

Avec: Nefel Tellioglu , Nicholas Geard , Rebecca H Chisholm

Evaluating the role of asymptomatic throat carriage of Streptococcus pyogenes in impetigo transmission in remote Aboriginal communities in Northern Territory, Australia: a retrospective genomic analysis.

The Lancet. Microbe

Avec: Jake A Lacey , Adrian J Marcato , Rebecca H Chisholm , Patricia T Campbell , Cameron Zachreson , David J Price , Taylah B James , Jacqueline M Morris , Claire L Gorrie , Malcolm I McDonald , Asha C Bowen , Philip M Giffard , Deborah C Holt , Bart J Currie , Jonathan R Carapetis , Ross M Andrews , Mark R Davies , Nicholas Geard , Jodie McVernon , Steven Y C Tong

Anomaly Detection in Endemic Disease Surveillance Data Using Machine Learning Techniques.

Healthcare (Basel, Switzerland)

Avec: Peter U Eze , Nicholas Geard , Ivo Mueller , Iadine Chades

Automatic consistency assurance for literature-based gene ontology annotation.

BMC bioinformatics

Avec: Jiyu Chen , Nicholas Geard , Justin Zobel , Karin Verspoor

Modelling testing and response strategies for COVID-19 outbreaks in remote Australian Aboriginal communities.

BMC infectious diseases

Avec: Ben B Hui , Damien Brown , Rebecca H Chisholm , Nicholas Geard , Jodie McVernon , David G Regan

Bow-tie architecture of gene regulatory networks in species of varying complexity.

Journal of the Royal Society, Interface

Avec: Gourab Ghosh Roy , Shan He , Nicholas Geard , Karin Verspoor

COVID-19 in low-tolerance border quarantine systems: Impact of the Delta variant of SARS-CoV-2.

Science advances

Avec: Cameron Zachreson , Freya M Shearer , David J Price , Michael J Lydeamore , Jodie McVernon , James McCaw , Nicholas Geard

Exploring automatic inconsistency detection for literature-based gene ontology annotation.

Bioinformatics (Oxford, England)

Avec: Jiyu Chen , Benjamin Goudey , Justin Zobel , Nicholas Geard , Karin Verspoor

Proportional multistate lifetable modelling of preventive interventions: concepts, code and worked examples.

International journal of epidemiology

Avec: Tony Blakely , Rob Moss , James Collins , Anja Mizdrak , Ankur Singh , Natalie Carvalho , Nick Wilson , Nicholas Geard , Abraham Flaxman

Epidemiological consequences of enduring strain-specific immunity requiring repeated episodes of infection.

PLoS computational biology

Avec: Rebecca H Chisholm , Nikki Sonenberg , Jake A Lacey , Malcolm I McDonald , Manisha Pandey , Mark R Davies , Steven Y C Tong , Jodie McVernon , Nicholas Geard

A model-based assessment of social isolation practices for COVID-19 outbreak response in residential care facilities.

BMC infectious diseases

Avec: Cameron Zachreson , Ruarai Tobin , Camelia Walker , Eamon Conway , Freya M Shearer , Jodie McVernon , Nicholas Geard

Modelling mass drug administration strategies for reducing scabies burden in Monrovia, Liberia.

Epidemiology and infection

Avec: Nefel Tellioglu , Rebecca H Chisholm , Patricia Therese Campbell , Shelui Collinson , Joseph Timothy , Karsor Kollie , Samuel Zayzay , Angela Devine , Jodie McVernon , Michael Marks , Nicholas Geard

Priority populations' experiences of isolation, quarantine and distancing for COVID-19: protocol for a longitudinal cohort study (Optimise Study).

BMJ open

Avec: Alisa Pedrana , Anna Bowring , Katherine Heath , Alexander J Thomas , Anna Wilkinson , Stephanie Fletcher-Lartey , Freya Saich , Stephanie Munari , Jane Oliver , Bronwen Merner , Aimee Altermatt , Thi Nguyen , Long Nguyen , Kathryn Young , Phoebe Kerr , Deborah Osborne , Edwin Jit Leung Kwong , Martha Vazquez Corona , Tianhui Ke , Yanqin Zhang , Limya Eisa , Adil Al-Qassas , Deng Malith , Angela Davis , Lisa Gibbs , Karen Block , Danielle Horyniak , Jack Wallace , Robert Power , Danny Vadasz , Rebecca Ryan , Freya Shearer , Caroline Homer , Alex Collie , Niamh Meagher , Margaret Danchin , Jessica Kaufman , Peng Wang , Ali Hassani , Giovanni Radhitio Putra Sadewo , Garry Robins , Colin Gallagher , Petr Matous , Bopha Roden , Maedeh Aboutalebi Karkavandi , James Coutinho , Chiara Broccatelli , Johan Koskinen , Stephanie Curtis , Joseph S Doyle , Nicholas Geard , Sophie Hill , Alison Coelho , Nick Scott , Dean Lusher , Mark A Stoové , Katherine B Gibney , Margaret Hellard

Ethical frameworks should be applied to computational modelling of infectious disease interventions.

PLoS computational biology

Avec: Cameron Zachreson , Julian Savulescu , Freya M Shearer , Michael J Plank , Simon Coghlan , Joel C Miller , Kylie E C Ainslie , Nicholas Geard

The acceptability and uptake of smartphone tracking for COVID-19 in Australia.

PloS one

Avec: Paul M Garrett , Joshua P White , Stephan Lewandowsky , Yoshihisa Kashima , Andrew Perfors , Daniel R Little , Nic Geard , Lewis Mitchell , Martin Tomko , Simon Dennis

A model of population dynamics with complex household structure and mobility: implications for transmission and control of communicable diseases.

PeerJ

Avec: Rebecca H Chisholm , Bradley Crammond , Yue Wu , Asha C Bowen , Patricia T Campbell , Steven Y C Tong , Jodie McVernon , Nicholas Geard

Rapid assessment of the risk of SARS-CoV-2 importation: case study and lessons learned.

Epidemics

Avec: Freya M Shearer , James Walker , Nefel Tellioglu , James M McCaw , Jodie McVernon , Andrew Black , Nicholas Geard

Rapid prototyping of models for COVID-19 outbreak detection in workplaces.

BMC infectious diseases

Avec: Isobel Abell , Cameron Zachreson , Eamon Conway , Nicholas Geard , Jodie McVernon , Thomas Waring , Christopher Baker

Individual variation in vaccine immune response can produce bimodal distributions of protection.

Vaccine

Avec: Cameron Zachreson , Ruarai Tobin , Joshua Szanyi , Camelia Walker , Deborah Cromer , Freya M Shearer , Eamon Conway , Gerard Ryan , Allen Cheng , James M McCaw , Nicholas Geard

Propagation, detection and correction of errors using the sequence database network.

Briefings in bioinformatics

Avec: Benjamin Goudey , Nicholas Geard , Karin Verspoor , Justin Zobel

MPVNN: Mutated Pathway Visible Neural Network architecture for interpretable prediction of cancer-specific survival risk.

Bioinformatics (Oxford, England)

Avec: Gourab Ghosh Roy , Nicholas Geard , Karin Verspoor , Shan He

Capturing Household Structure and Mobility within and between Remote Aboriginal Communities in Northern Australia Using Longitudinal Data: A Pilot Study.

International journal of environmental research and public health

Avec: Jessie J Goldsmith , Patricia T Campbell , Juan Pablo Villanueva-Cabezas , Rebecca H Chisholm , Melita McKinnon , George G Gurruwiwi , Roslyn G Dhurrkay , Alfred M Dockery , Nicholas Geard , Steven Y C Tong , Jodie McVernon , Katherine B Gibney

Value of information analysis for pandemic response: intensive care unit preparedness at the onset of COVID-19.

BMC health services research

Avec: Peter U Eze , Nicholas Geard , Christopher M Baker , Patricia T Campbell , Iadine Chades

Integration of background knowledge for automatic detection of inconsistencies in gene ontology annotation.

Bioinformatics (Oxford, England)

Avec: Jiyu Chen , Benjamin Goudey , Nicholas Geard , Karin Verspoor

Longitudinal Analysis of Group A Streptococcus emm Types and emm Clusters in a High-Prevalence Setting: Relationship between Past and Future Infections.

The Journal of infectious diseases

Avec: Patricia Therese Campbell , Steven Y C Tong , Nicholas Geard , Mark R Davies , Kate A Worthing , Jake A Lacey , Pierre R Smeesters , Michael R Batzloff , Joseph Kado , Adam W J Jenney , Jodie Mcvernon , Andrew C Steer

Profiling Mycobacterium tuberculosis transmission and the resulting disease burden in the five highest tuberculosis burden countries.

BMC medicine

Avec: Romain Ragonnet , James M Trauer , Nicholas Geard , Nick Scott , Emma S McBryde

Optimal timing of influenza vaccine during pregnancy: A systematic review and meta-analysis.

Influenza and other respiratory viruses

Avec: Will Cuningham , Nicholas Geard , James E Fielding , Sabine Braat , Shabir A Madhi , Marta C Nunes , Lisa M Christian , Shin-Yu Lin , Chien-Nan Lee , Koushi Yamaguchi , Hans Bisgaard , Bo Chawes , An-Shine Chao , Geraldine Blanchard-Rohner , Elizabeth P Schlaudecker , Barbra M Fisher , Jodie McVernon , Robert Moss

What can urban mobility data reveal about the spatial distribution of infection in a single city?

BMC public health

Avec: Robert Moss , Elham Naghizade , Martin Tomko , Nicholas Geard

GEOFIL: A spatially-explicit agent-based modelling framework for predicting the long-term transmission dynamics of lymphatic filariasis in American Samoa.

Epidemics

Avec: Zhijing Xu , Patricia M Graves , Colleen L Lau , Archie Clements , Nicholas Geard , Kathryn Glass

Mapping home internet activity during COVID-19 lockdown to identify occupation related inequalities.

Scientific reports

Avec: Cameron Zachreson , Erika Martino , Martin Tomko , Freya M Shearer , Rebecca Bentley , Nicholas Geard

Modelling the household-level impact of a maternal respiratory syncytial virus (RSV) vaccine in a high-income setting.

BMC medicine

Avec: Patricia T Campbell , Nicholas Geard , Alexandra B Hogan

Risk mapping for COVID-19 outbreaks in Australia using mobility data.

Journal of the Royal Society, Interface

Avec: Cameron Zachreson , Lewis Mitchell , Michael J Lydeamore , Nicolas Rebuli , Martin Tomko , Nicholas Geard

The efficacy of sampling strategies for estimating scabies prevalence.

PLoS neglected tropical diseases

Avec: Nefel Tellioglu , Rebecca H Chisholm , Jodie McVernon , Nicholas Geard , Patricia Therese Campbell

Model-based estimation of the impact on rotavirus disease of RV3-BB vaccine administered in a neonatal or infant schedule.

Human vaccines & immunotherapeutics

Avec: Nicholas Geard , Richard Bradhurst , Nefel Tellioglu , Vicka Oktaria , Jodie McVernon , Amanda Handley , Julie E Bines

COVID-19 vaccine coverage targets to inform reopening plans in a low incidence setting.

Proceedings. Biological sciences

Avec: Eamon Conway , Camelia R Walker , Christopher Baker , Michael J Lydeamore , Gerard E Ryan , Trish Campbell , Joel C Miller , Nic Rebuli , Max Yeung , Greg Kabashima , Nicholas Geard , James Wood , James M McCaw , Jodie McVernon , Nick Golding , David J Price , Freya M Shearer

Correlation of viral loads in disease transmission could affect early estimates of the reproduction number.

Journal of the Royal Society, Interface

Avec: Thomas Harris , Nicholas Geard , Cameron Zachreson

Carbapenemase-producing enterobacterales colonisation status does not lead to more frequent admissions: a linked patient study.

Antimicrobial resistance and infection control

Avec: Michael J Lydeamore , Tjibbe Donker , David Wu , Claire Gorrie , Annabelle Turner , Marion Easton , Daneeta Hennessy , Nicholas Geard , Benjamin P Howden , Ben S Cooper , Andrew Wilson , Anton Y Peleg , Andrew J Stewardson

Modelling patient trajectories in emergency department simulations using retrospective patient cohorts.

Computers in biology and medicine

Avec: Roben Delos Reyes , Daniel Capurro , Nicholas Geard

Réseau de co-auteurs

Jodie McVernon 14 collaborations

Cameron Zachreson 9 collaborations

Rebecca H Chisholm 8 collaborations

Karin Verspoor 7 collaborations

Freya M Shearer 7 collaborations

Nefel Tellioglu 5 collaborations

Patricia T Campbell 5 collaborations

Steven Y C Tong 5 collaborations

Michael J Lydeamore 4 collaborations

Eamon Conway 4 collaborations

Martin Tomko 4 collaborations

Gourab Ghosh Roy 3 collaborations

Shan He 3 collaborations

Jake A Lacey 3 collaborations

David J Price 3 collaborations

Mark R Davies 3 collaborations

Jiyu Chen 3 collaborations

Justin Zobel 3 collaborations

Benjamin Goudey 3 collaborations

Patricia Therese Campbell 3 collaborations

James M McCaw 3 collaborations

Malcolm I McDonald 2 collaborations

Asha C Bowen 2 collaborations

Peter U Eze 2 collaborations

Iadine Chades 2 collaborations

Ruarai Tobin 2 collaborations

Camelia Walker 2 collaborations

Nick Scott 2 collaborations

Katherine B Gibney 2 collaborations

Joel C Miller 2 collaborations

Lewis Mitchell 2 collaborations

Christopher Baker 2 collaborations

Robert Moss 2 collaborations

Adrian J Marcato 1 collaboration

Taylah B James 1 collaboration

Jacqueline M Morris 1 collaboration

Claire L Gorrie 1 collaboration

Philip M Giffard 1 collaboration

Deborah C Holt 1 collaboration

Bart J Currie 1 collaboration

Jonathan R Carapetis 1 collaboration

Ross M Andrews 1 collaboration

Ivo Mueller 1 collaboration

Ben B Hui 1 collaboration

Damien Brown 1 collaboration

David G Regan 1 collaboration

James McCaw 1 collaboration

Tony Blakely 1 collaboration

Rob Moss 1 collaboration

James Collins 1 collaboration

Anja Mizdrak 1 collaboration

Ankur Singh 1 collaboration

Natalie Carvalho 1 collaboration

Nick Wilson 1 collaboration

Abraham Flaxman 1 collaboration

Nikki Sonenberg 1 collaboration

Manisha Pandey 1 collaboration

Shelui Collinson 1 collaboration

Joseph Timothy 1 collaboration

Karsor Kollie 1 collaboration

Samuel Zayzay 1 collaboration

Angela Devine 1 collaboration

Michael Marks 1 collaboration

Alisa Pedrana 1 collaboration

Anna Bowring 1 collaboration

Katherine Heath 1 collaboration

Alexander J Thomas 1 collaboration

Anna Wilkinson 1 collaboration

Stephanie Fletcher-Lartey 1 collaboration

Freya Saich 1 collaboration

Stephanie Munari 1 collaboration

Jane Oliver 1 collaboration

Bronwen Merner 1 collaboration

Aimee Altermatt 1 collaboration

Thi Nguyen 1 collaboration

Long Nguyen 1 collaboration

Kathryn Young 1 collaboration

Phoebe Kerr 1 collaboration

Deborah Osborne 1 collaboration

Edwin Jit Leung Kwong 1 collaboration

Martha Vazquez Corona 1 collaboration

Tianhui Ke 1 collaboration

Yanqin Zhang 1 collaboration

Limya Eisa 1 collaboration

Adil Al-Qassas 1 collaboration

Deng Malith 1 collaboration

Angela Davis 1 collaboration

Lisa Gibbs 1 collaboration

Karen Block 1 collaboration

Danielle Horyniak 1 collaboration

Jack Wallace 1 collaboration

Robert Power 1 collaboration

Danny Vadasz 1 collaboration

Rebecca Ryan 1 collaboration

Freya Shearer 1 collaboration

Caroline Homer 1 collaboration

Alex Collie 1 collaboration

Niamh Meagher 1 collaboration

Margaret Danchin 1 collaboration

Jessica Kaufman 1 collaboration

Peng Wang 1 collaboration

Ali Hassani 1 collaboration

Giovanni Radhitio Putra Sadewo 1 collaboration

Garry Robins 1 collaboration

Colin Gallagher 1 collaboration

Petr Matous 1 collaboration

Bopha Roden 1 collaboration

Maedeh Aboutalebi Karkavandi 1 collaboration

James Coutinho 1 collaboration

Chiara Broccatelli 1 collaboration

Johan Koskinen 1 collaboration

Stephanie Curtis 1 collaboration

Joseph S Doyle 1 collaboration

Sophie Hill 1 collaboration

Alison Coelho 1 collaboration

Dean Lusher 1 collaboration

Mark A Stoové 1 collaboration

Margaret Hellard 1 collaboration

Julian Savulescu 1 collaboration

Michael J Plank 1 collaboration

Simon Coghlan 1 collaboration

Kylie E C Ainslie 1 collaboration

Paul M Garrett 1 collaboration

Joshua P White 1 collaboration

Stephan Lewandowsky 1 collaboration

Yoshihisa Kashima 1 collaboration

Andrew Perfors 1 collaboration

Daniel R Little 1 collaboration

Nic Geard 1 collaboration

Simon Dennis 1 collaboration

Bradley Crammond 1 collaboration

Yue Wu 1 collaboration

James Walker 1 collaboration

Andrew Black 1 collaboration

Isobel Abell 1 collaboration

Thomas Waring 1 collaboration

Joshua Szanyi 1 collaboration

Deborah Cromer 1 collaboration

Gerard Ryan 1 collaboration

Allen Cheng 1 collaboration

Jessie J Goldsmith 1 collaboration

Juan Pablo Villanueva-Cabezas 1 collaboration

Melita McKinnon 1 collaboration

George G Gurruwiwi 1 collaboration

Roslyn G Dhurrkay 1 collaboration

Alfred M Dockery 1 collaboration

Christopher M Baker 1 collaboration

Kate A Worthing 1 collaboration

Pierre R Smeesters 1 collaboration

Michael R Batzloff 1 collaboration

Joseph Kado 1 collaboration

Adam W J Jenney 1 collaboration

Jodie Mcvernon 1 collaboration

Andrew C Steer 1 collaboration

Romain Ragonnet 1 collaboration

James M Trauer 1 collaboration

Emma S McBryde 1 collaboration

Will Cuningham 1 collaboration

James E Fielding 1 collaboration

Sabine Braat 1 collaboration

Shabir A Madhi 1 collaboration

Marta C Nunes 1 collaboration

Lisa M Christian 1 collaboration

Shin-Yu Lin 1 collaboration

Chien-Nan Lee 1 collaboration

Koushi Yamaguchi 1 collaboration

Hans Bisgaard 1 collaboration

Bo Chawes 1 collaboration

An-Shine Chao 1 collaboration

Geraldine Blanchard-Rohner 1 collaboration

Elizabeth P Schlaudecker 1 collaboration

Barbra M Fisher 1 collaboration

Elham Naghizade 1 collaboration

Zhijing Xu 1 collaboration

Patricia M Graves 1 collaboration

Colleen L Lau 1 collaboration

Archie Clements 1 collaboration

Kathryn Glass 1 collaboration

Erika Martino 1 collaboration

Rebecca Bentley 1 collaboration

Alexandra B Hogan 1 collaboration

Nicolas Rebuli 1 collaboration

Richard Bradhurst 1 collaboration

Vicka Oktaria 1 collaboration

Amanda Handley 1 collaboration

Julie E Bines 1 collaboration

Camelia R Walker 1 collaboration

Gerard E Ryan 1 collaboration

Trish Campbell 1 collaboration

Nic Rebuli 1 collaboration

Max Yeung 1 collaboration

Greg Kabashima 1 collaboration

James Wood 1 collaboration

Nick Golding 1 collaboration

Thomas Harris 1 collaboration

Tjibbe Donker 1 collaboration

David Wu 1 collaboration

Claire Gorrie 1 collaboration

Annabelle Turner 1 collaboration

Marion Easton 1 collaboration

Daneeta Hennessy 1 collaboration

Benjamin P Howden 1 collaboration

Ben S Cooper 1 collaboration

Andrew Wilson 1 collaboration

Anton Y Peleg 1 collaboration

Andrew J Stewardson 1 collaboration

Roben Delos Reyes 1 collaboration

Daniel Capurro 1 collaboration