Rapid prototyping of models for COVID-19 outbreak detection in workplaces.


Journal

BMC infectious diseases
ISSN: 1471-2334
Titre abrégé: BMC Infect Dis
Pays: England
ID NLM: 100968551

Informations de publication

Date de publication:
23 Oct 2023
Historique:
received: 06 03 2023
accepted: 15 10 2023
medline: 30 10 2023
pubmed: 24 10 2023
entrez: 23 10 2023
Statut: epublish

Résumé

Early case detection is critical to preventing onward transmission of COVID-19 by enabling prompt isolation of index infections, and identification and quarantining of contacts. Timeliness and completeness of ascertainment depend on the surveillance strategy employed. This paper presents modelling used to inform workplace testing strategies for the Australian government in early 2021. We use rapid prototype modelling to quickly investigate the effectiveness of testing strategies to aid decision making. Models are developed with a focus on providing relevant results to policy makers, and these models are continually updated and improved as new questions are posed. Developed to support the implementation of testing strategies in high risk workplace settings in Australia, our modelling explores the effects of test frequency and sensitivity on outbreak detection. We start with an exponential growth model, which demonstrates how outbreak detection changes depending on growth rate, test frequency and sensitivity. From the exponential model, we learn that low sensitivity tests can produce high probabilities of detection when testing occurs frequently. We then develop a more complex Agent Based Model, which was used to test the robustness of the results from the exponential model, and extend it to include intermittent workplace scheduling. These models help our fundamental understanding of disease detectability through routine surveillance in workplaces and evaluate the impact of testing strategies and workplace characteristics on the effectiveness of surveillance. This analysis highlights the risks of particular work patterns while also identifying key testing strategies to best improve outbreak detection in high risk workplaces.

Identifiants

pubmed: 37872480
doi: 10.1186/s12879-023-08713-y
pii: 10.1186/s12879-023-08713-y
pmc: PMC10591376
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

713

Informations de copyright

© 2023. BioMed Central Ltd., part of Springer Nature.

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Auteurs

Isobel Abell (I)

School of Mathematics and Statistics, The University of Melbourne, Melbourne, Australia. isobel.abell@unimelb.edu.au.
Melbourne Centre for Data Science, The University of Melbourne, Melbourne, Australia. isobel.abell@unimelb.edu.au.

Cameron Zachreson (C)

School of Computing and Information Systems, The University of Melbourne, Melbourne, Australia.

Eamon Conway (E)

Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia.

Nicholas Geard (N)

School of Computing and Information Systems, The University of Melbourne, Melbourne, Australia.

Jodie McVernon (J)

Peter Doherty Institute for Infection and Immunity, The University of Melbourne and the Royal Melbourne Hospital, Melbourne, Australia.
Centre for Epidemiology and Biostatistics, Melbourne School of Population and Global Health, The University of Melbourne, Melbourne, Australia.
Murdoch Children's Research Institute, The Royal Children's Hospital, Melbourne, Australia.

Thomas Waring (T)

School of Mathematics and Statistics, The University of Melbourne, Melbourne, Australia.
Melbourne Centre for Data Science, The University of Melbourne, Melbourne, Australia.
Centre of Excellence for Biosecurity Risk Analysis, The University of Melbourne, Melbourne, Australia.

Christopher Baker (C)

School of Mathematics and Statistics, The University of Melbourne, Melbourne, Australia.
Melbourne Centre for Data Science, The University of Melbourne, Melbourne, Australia.
Centre of Excellence for Biosecurity Risk Analysis, The University of Melbourne, Melbourne, Australia.

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