Peter Bankhead

Affiliations

Edinburgh Pathology, University of Edinburgh, Edinburgh, United Kingdom.
Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, United Kingdom.

Publications (18)

Deep Learning-Based Segmentation and Quantification in Experimental Kidney Histopathology.

Journal of the American Society of Nephrology : JASN

Avec: Nassim Bouteldja , Barbara M Klinkhammer , Roman D Bülow , Patrick Droste , Simon W Otten , Saskia Freifrau von Stillfried , Julia Moellmann , Susan M Sheehan , Ron Korstanje , Sylvia Menzel , Peter Bankhead , Matthias Mietsch , Charis Drummer , Michael Lehrke , Rafael Kramann , Jürgen Floege , Peter Boor , Dorit Merhof

Single-cell proteomics defines the cellular heterogeneity of localized prostate cancer.

Cell reports. Medicine

Avec: Laura De Vargas Roditi , Andrea Jacobs , Jan H Rueschoff , Pete Bankhead , Stéphane Chevrier , Hartland W Jackson , Thomas Hermanns , Christian D Fankhauser , Cedric Poyet , Felix Chun , Niels J Rupp , Alexandra Tschaebunin , Bernd Bodenmiller , Peter J Wild

Human Pancreatic Carcinoma-Associated Fibroblasts Promote Expression of Co-inhibitory Markers on CD4

Frontiers in immunology

Avec: Laia Gorchs , Carlos Fernández Moro , Peter Bankhead , Katharina P Kern , Imrul Sadeak , Qingda Meng , Elena Rangelova , Helen Kaipe

Developing open-source software for bioimage analysis: opportunities and challenges.

F1000Research

Avec: Florian Levet , Anne E Carpenter , Kevin W Eliceiri , Anna Kreshuk , Peter Bankhead , Robert Haase

The crucial role of bioimage analysts in scientific research and publication.

Journal of cell science

Avec: Beth A Cimini , Peter Bankhead , Rocco D'Antuono , Elnaz Fazeli , Julia Fernandez-Rodriguez , Caterina Fuster-Barceló , Robert Haase , Helena Klara Jambor , Martin L Jones , Florian Jug , Anna H Klemm , Anna Kreshuk , Stefania Marcotti , Gabriel G Martins , Sara McArdle , Kota Miura , Arrate Muñoz-Barrutia , Laura C Murphy , Michael S Nelson , Simon F Nørrelykke , Perrine Paul-Gilloteaux , Thomas Pengo , Joanna W Pylvänäinen , Lior Pytowski , Arianna Ravera , Annika Reinke , Yousr Rekik , Caterina Strambio-De-Castillia , Daniel Thédié , Virginie Uhlmann , Oliver Umney , Laura Wiggins , Kevin W Eliceiri

Immune status is prognostic for poor survival in colorectal cancer patients and is associated with tumour hypoxia.

British journal of cancer

Avec: Stephanie G Craig , Matthew P Humphries , Matthew Alderdice , Victoria Bingham , Susan D Richman , Maurice B Loughrey , Helen G Coleman , Amelie Viratham-Pulsawatdi , Kris McCombe , Graeme I Murray , Andrew Blake , Enric Domingo , James Robineau , Louise Brown , David Fisher , Matthew T Seymour , Phil Quirke , Peter Bankhead , Stephen McQuaid , Mark Lawler , Darragh G McArt , Tim S Maughan , Jacqueline A James , Manuel Salto-Tellez

Recent Advances in Pathology: the 2022 Annual Review Issue of The Journal of Pathology.

The Journal of pathology

Avec: C Simon Herrington , Richard Poulsom , Nischalan Pillay , Peter Bankhead , Philip J Coates

QuPath Algorithm Accurately Identifies MLH1-Deficient Inflammatory Bowel Disease-Associated Colorectal Cancers in a Tissue Microarray.

Diagnostics (Basel, Switzerland)

Avec: Ross J Porter , Shahida Din , Peter Bankhead , Anca Oniscu , Mark J Arends

Open and reusable deep learning for pathology with WSInfer and QuPath.

NPJ precision oncology

Avec: Jakub R Kaczmarzyk , Alan O'Callaghan , Fiona Inglis , Swarad Gat , Tahsin Kurc , Rajarsi Gupta , Erich Bremer , Peter Bankhead , Joel H Saltz

Identifying mismatch repair-deficient colon cancer: near-perfect concordance between immunohistochemistry and microsatellite instability testing in a large, population-based series.

Histopathology

Avec: Maurice B Loughrey , Jason McGrath , Helen G Coleman , Peter Bankhead , Perry Maxwell , Claire McGready , Victoria Bingham , Matthew P Humphries , Stephanie G Craig , Stephen McQuaid , Manuel Salto-Tellez , Jacqueline A James

Development of a semi-automated method for tumour budding assessment in colorectal cancer and comparison with manual methods.

Histopathology

Avec: Natalie C Fisher , Maurice B Loughrey , Helen G Coleman , Melvin D Gelbard , Peter Bankhead , Philip D Dunne

A biologist's guide to planning and performing quantitative bioimaging experiments.

PLoS biology

Avec: Rebecca A Senft , Barbara Diaz-Rohrer , Pina Colarusso , Lucy Swift , Nasim Jamali , Helena Jambor , Thomas Pengo , Craig Brideau , Paula Montero Llopis , Virginie Uhlmann , Jason Kirk , Kevin Andrew Gonzales , Peter Bankhead , Edward L Evans , Kevin W Eliceiri , Beth A Cimini

OPTIMAL: An OPTimized Imaging Mass cytometry AnaLysis framework for benchmarking segmentation and data exploration.

Cytometry. Part A : the journal of the International Society for Analytical Cytology

Avec: Bethany Hunter , Ioana Nicorescu , Emma Foster , David McDonald , Gillian Hulme , Andrew Fuller , Amanda Thomson , Thibaut Goldsborough , Catharien M U Hilkens , Joaquim Majo , Luke Milross , Andrew Fisher , Peter Bankhead , John Wills , Paul Rees , Andrew Filby , George Merces

Using the R Package Spatstat to Assess Inhibitory Effects of Microregional Hypoxia on the Infiltration of Cancers of the Head and Neck Region by Cytotoxic T Lymphocytes.

Cancers

Avec: Justus Kaufmann , Christophe A N Biscio , Peter Bankhead , Stefanie Zimmer , Heinz Schmidberger , Ege Rubak , Arnulf Mayer

Pan-cancer image-based detection of clinically actionable genetic alterations.

Nature cancer

Avec: Jakob Nikolas Kather , Lara R Heij , Heike I Grabsch , Chiara Loeffler , Amelie Echle , Hannah Sophie Muti , Jeremias Krause , Jan M Niehues , Kai A J Sommer , Peter Bankhead , Loes F S Kooreman , Jefree J Schulte , Nicole A Cipriani , Roman D Buelow , Peter Boor , Nadi-Na Ortiz-Brüchle , Andrew M Hanby , Valerie Speirs , Sara Kochanny , Akash Patnaik , Andrew Srisuwananukorn , Hermann Brenner , Michael Hoffmeister , Piet A van den Brandt , Dirk Jäger , Christian Trautwein , Alexander T Pearson , Tom Luedde

Developing image analysis methods for digital pathology.

The Journal of pathology

Avec: Peter Bankhead

MYC sensitises cells to apoptosis by driving energetic demand.

Nature communications

Avec: Joy Edwards-Hicks , Huizhong Su , Maurizio Mangolini , Kubra K Yoneten , Jimi Wills , Giovanny Rodriguez-Blanco , Christine Young , Kevin Cho , Heather Barker , Morwenna Muir , Ania Naila Guerrieri , Xue-Feng Li , Rachel White , Piotr Manasterski , Elena Mandrou , Karen Wills , Jingyu Chen , Emily Abraham , Kianoosh Sateri , Bin-Zhi Qian , Peter Bankhead , Mark Arends , Noor Gammoh , Alex von Kriegsheim , Gary J Patti , Andrew H Sims , Juan Carlos Acosta , Valerie Brunton , Kamil R Kranc , Maria Christophorou , Erika L Pearce , Ingo Ringshausen , Andrew J Finch

AimSeg: A machine-learning-aided tool for axon, inner tongue and myelin segmentation.

PLoS computational biology

Avec: Pau Carrillo-Barberà , Ana Maria Rondelli , Jose Manuel Morante-Redolat , Bertrand Vernay , Anna Williams , Peter Bankhead

Réseau de co-auteurs

Kevin W Eliceiri 3 collaborations

Maurice B Loughrey 3 collaborations

Helen G Coleman 3 collaborations

Peter Boor 2 collaborations

Anna Kreshuk 2 collaborations

Robert Haase 2 collaborations

Beth A Cimini 2 collaborations

Thomas Pengo 2 collaborations

Virginie Uhlmann 2 collaborations

Stephanie G Craig 2 collaborations

Matthew P Humphries 2 collaborations

Victoria Bingham 2 collaborations

Stephen McQuaid 2 collaborations

Jacqueline A James 2 collaborations

Manuel Salto-Tellez 2 collaborations

Nassim Bouteldja 1 collaboration

Barbara M Klinkhammer 1 collaboration

Roman D Bülow 1 collaboration

Patrick Droste 1 collaboration

Simon W Otten 1 collaboration

Saskia Freifrau von Stillfried 1 collaboration

Julia Moellmann 1 collaboration

Susan M Sheehan 1 collaboration

Ron Korstanje 1 collaboration

Sylvia Menzel 1 collaboration

Matthias Mietsch 1 collaboration

Charis Drummer 1 collaboration

Michael Lehrke 1 collaboration

Rafael Kramann 1 collaboration

Jürgen Floege 1 collaboration

Dorit Merhof 1 collaboration

Laura De Vargas Roditi 1 collaboration

Andrea Jacobs 1 collaboration

Jan H Rueschoff 1 collaboration

Pete Bankhead 1 collaboration

Stéphane Chevrier 1 collaboration

Hartland W Jackson 1 collaboration

Thomas Hermanns 1 collaboration

Christian D Fankhauser 1 collaboration

Cedric Poyet 1 collaboration

Felix Chun 1 collaboration

Niels J Rupp 1 collaboration

Alexandra Tschaebunin 1 collaboration

Bernd Bodenmiller 1 collaboration

Peter J Wild 1 collaboration

Laia Gorchs 1 collaboration

Carlos Fernández Moro 1 collaboration

Katharina P Kern 1 collaboration

Imrul Sadeak 1 collaboration

Qingda Meng 1 collaboration

Elena Rangelova 1 collaboration

Helen Kaipe 1 collaboration

Florian Levet 1 collaboration

Anne E Carpenter 1 collaboration

Rocco D'Antuono 1 collaboration

Elnaz Fazeli 1 collaboration

Julia Fernandez-Rodriguez 1 collaboration

Caterina Fuster-Barceló 1 collaboration

Helena Klara Jambor 1 collaboration

Martin L Jones 1 collaboration

Florian Jug 1 collaboration

Anna H Klemm 1 collaboration

Stefania Marcotti 1 collaboration

Gabriel G Martins 1 collaboration

Sara McArdle 1 collaboration

Kota Miura 1 collaboration

Arrate Muñoz-Barrutia 1 collaboration

Laura C Murphy 1 collaboration

Michael S Nelson 1 collaboration

Simon F Nørrelykke 1 collaboration

Perrine Paul-Gilloteaux 1 collaboration

Joanna W Pylvänäinen 1 collaboration

Lior Pytowski 1 collaboration

Arianna Ravera 1 collaboration

Annika Reinke 1 collaboration

Yousr Rekik 1 collaboration

Caterina Strambio-De-Castillia 1 collaboration

Daniel Thédié 1 collaboration

Oliver Umney 1 collaboration

Laura Wiggins 1 collaboration

Matthew Alderdice 1 collaboration

Susan D Richman 1 collaboration

Amelie Viratham-Pulsawatdi 1 collaboration

Kris McCombe 1 collaboration

Graeme I Murray 1 collaboration

Andrew Blake 1 collaboration

Enric Domingo 1 collaboration

James Robineau 1 collaboration

Louise Brown 1 collaboration

David Fisher 1 collaboration

Matthew T Seymour 1 collaboration

Phil Quirke 1 collaboration

Mark Lawler 1 collaboration

Darragh G McArt 1 collaboration

Tim S Maughan 1 collaboration

C Simon Herrington 1 collaboration

Richard Poulsom 1 collaboration

Nischalan Pillay 1 collaboration

Philip J Coates 1 collaboration

Ross J Porter 1 collaboration

Shahida Din 1 collaboration

Anca Oniscu 1 collaboration

Mark J Arends 1 collaboration

Jakub R Kaczmarzyk 1 collaboration

Alan O'Callaghan 1 collaboration

Fiona Inglis 1 collaboration

Swarad Gat 1 collaboration

Tahsin Kurc 1 collaboration

Rajarsi Gupta 1 collaboration

Erich Bremer 1 collaboration

Joel H Saltz 1 collaboration

Jason McGrath 1 collaboration

Perry Maxwell 1 collaboration

Claire McGready 1 collaboration

Natalie C Fisher 1 collaboration

Melvin D Gelbard 1 collaboration

Philip D Dunne 1 collaboration

Rebecca A Senft 1 collaboration

Barbara Diaz-Rohrer 1 collaboration

Pina Colarusso 1 collaboration

Lucy Swift 1 collaboration

Nasim Jamali 1 collaboration

Helena Jambor 1 collaboration

Craig Brideau 1 collaboration

Paula Montero Llopis 1 collaboration

Jason Kirk 1 collaboration

Kevin Andrew Gonzales 1 collaboration

Edward L Evans 1 collaboration

Bethany Hunter 1 collaboration

Ioana Nicorescu 1 collaboration

Emma Foster 1 collaboration

David McDonald 1 collaboration

Gillian Hulme 1 collaboration

Andrew Fuller 1 collaboration

Amanda Thomson 1 collaboration

Thibaut Goldsborough 1 collaboration

Catharien M U Hilkens 1 collaboration

Joaquim Majo 1 collaboration

Luke Milross 1 collaboration

Andrew Fisher 1 collaboration

John Wills 1 collaboration

Paul Rees 1 collaboration

Andrew Filby 1 collaboration

George Merces 1 collaboration

Justus Kaufmann 1 collaboration

Christophe A N Biscio 1 collaboration

Stefanie Zimmer 1 collaboration

Heinz Schmidberger 1 collaboration

Ege Rubak 1 collaboration

Arnulf Mayer 1 collaboration

Jakob Nikolas Kather 1 collaboration

Lara R Heij 1 collaboration

Heike I Grabsch 1 collaboration

Chiara Loeffler 1 collaboration

Amelie Echle 1 collaboration

Hannah Sophie Muti 1 collaboration

Jeremias Krause 1 collaboration

Jan M Niehues 1 collaboration

Kai A J Sommer 1 collaboration

Loes F S Kooreman 1 collaboration

Jefree J Schulte 1 collaboration

Nicole A Cipriani 1 collaboration

Roman D Buelow 1 collaboration

Nadi-Na Ortiz-Brüchle 1 collaboration

Andrew M Hanby 1 collaboration

Valerie Speirs 1 collaboration

Sara Kochanny 1 collaboration

Akash Patnaik 1 collaboration

Andrew Srisuwananukorn 1 collaboration

Hermann Brenner 1 collaboration

Michael Hoffmeister 1 collaboration

Piet A van den Brandt 1 collaboration

Dirk Jäger 1 collaboration

Christian Trautwein 1 collaboration

Alexander T Pearson 1 collaboration

Tom Luedde 1 collaboration

Joy Edwards-Hicks 1 collaboration

Huizhong Su 1 collaboration

Maurizio Mangolini 1 collaboration

Kubra K Yoneten 1 collaboration

Jimi Wills 1 collaboration

Giovanny Rodriguez-Blanco 1 collaboration

Christine Young 1 collaboration

Kevin Cho 1 collaboration

Heather Barker 1 collaboration

Morwenna Muir 1 collaboration

Ania Naila Guerrieri 1 collaboration

Xue-Feng Li 1 collaboration

Rachel White 1 collaboration

Piotr Manasterski 1 collaboration

Elena Mandrou 1 collaboration

Karen Wills 1 collaboration

Jingyu Chen 1 collaboration

Emily Abraham 1 collaboration

Kianoosh Sateri 1 collaboration

Bin-Zhi Qian 1 collaboration

Mark Arends 1 collaboration

Noor Gammoh 1 collaboration

Alex von Kriegsheim 1 collaboration

Gary J Patti 1 collaboration

Andrew H Sims 1 collaboration

Juan Carlos Acosta 1 collaboration

Valerie Brunton 1 collaboration

Kamil R Kranc 1 collaboration

Maria Christophorou 1 collaboration

Erika L Pearce 1 collaboration

Ingo Ringshausen 1 collaboration

Andrew J Finch 1 collaboration

Pau Carrillo-Barberà 1 collaboration

Ana Maria Rondelli 1 collaboration

Jose Manuel Morante-Redolat 1 collaboration

Bertrand Vernay 1 collaboration

Anna Williams 1 collaboration