Rytas Vilgalys

Affiliations

Department of Biology, Duke University, Durham, NC, United States.

Publications (21)

Fungal-Bacterial Networks in the

Frontiers in microbiology

Avec: Gregory Bonito , Gian Maria Niccolò Benucci , Khalid Hameed , Deborah Weighill , Piet Jones , Ko-Hsuan Chen , Daniel Jacobson , Christopher Schadt , Rytas Vilgalys

Phylogenetic diversity of 200+ isolates of the ectomycorrhizal fungus Cenococcum geophilum associated with Populus trichocarpa soils in the Pacific Northwest, USA and comparison to globally distributed representatives.

PloS one

Avec: Jessica M Vélez , Reese M Morris , Rytas Vilgalys , Jessy Labbé , Christopher W Schadt

Heterospecific Neighbor Plants Impact Root Microbiome Diversity and Molecular Function of Root Fungi.

Frontiers in microbiology

Avec: Hui-Ling Liao , Gregory Bonito , Khalid Hameed , Steven H Wu , Ko-Hsuan Chen , Jesse Labbé , Christopher W Schadt , Gerald A Tuskan , Francis Martin , Alan Kuo , Kerrie Barry , Igor V Grigoriev , Rytas Vilgalys

Fungal biomass and ectomycorrhizal community assessment of phosphorus responsive

Frontiers in fungal biology

Avec: Jacob Hackman , Alex Woodley , David Carter , Brian Strahm , Collin Averill , Rytas Vilgalys , Kevin Garcia , Rachel Cook

Sequencing the Genomes of the First Terrestrial Fungal Lineages: What Have We Learned?

Microorganisms

Avec: Andrii P Gryganskyi , Jacob Golan , Anna Muszewska , Alexander Idnurm , Somayeh Dolatabadi , Stephen J Mondo , Vira B Kutovenko , Volodymyr O Kutovenko , Michael T Gajdeczka , Iryna M Anishchenko , Julia Pawlowska , Ngoc Vinh Tran , Ingo Ebersberger , Kerstin Voigt , Yan Wang , Ying Chang , Teresa E Pawlowska , Joseph Heitman , Rytas Vilgalys , Gregory Bonito , Gerald L Benny , Matthew E Smith , Nicole Reynolds , Timothy Y James , Igor V Grigoriev , Joseph W Spatafora , Jason E Stajich

Ectomycorrhizal fungi enhance pine growth by stimulating iron-dependent mechanisms with trade-offs in symbiotic performance.

The New phytologist

Avec: Kaile Zhang , Haihua Wang , Ryan Tappero , Jennifer M Bhatnagar , Rytas Vilgalys , Kerrie Barry , Keykhosrow Keymanesh , Sravanthi Tejomurthula , Igor V Grigoriev , William R Kew , Elizabeth K Eder , Carrie D Nicora , Hui-Ling Liao

Investigating the mycobiome of the Holcomb Creosote Superfund Site.

Chemosphere

Avec: Lauren M Czaplicki , Lauren K Redfern , Ellen M Cooper , P Lee Ferguson , Rytas Vilgalys , Claudia K Gunsch

Suilloid fungi as global drivers of pine invasions.

The New phytologist

Avec: Nahuel Policelli , Thomas D Bruns , Rytas Vilgalys , Martin A Nuñez

Phylogenetic conservatism of mycoparasitism and its contribution to pathogen antagonism.

Molecular ecology

Avec: Edward G Barge , Devin R Leopold , Alejandro Rojas , Rytas Vilgalys , Posy E Busby

PacBio high-throughput multi-locus sequencing reveals high genetic diversity in mushroom-forming fungi.

Molecular ecology resources

Avec: Rachel A Swenie , Brian P Looney , Yi-Hong Ke , J Alejandro Rojas , Marc A Cubeta , Gitta J Langer , Rytas Vilgalys , P Brandon Matheny

Decoding the chemical language of

bioRxiv : the preprint server for biology

Avec: Sameer Mudbhari , Lotus Lofgren , Manasa R Appidi , Rytas Vilgalys , Robert L Hettich , Paul Abraham

Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits.

Nature communications

Avec: Shingo Miyauchi , Enikő Kiss , Alan Kuo , Elodie Drula , Annegret Kohler , Marisol Sánchez-García , Emmanuelle Morin , Bill Andreopoulos , Kerrie W Barry , Gregory Bonito , Marc Buée , Akiko Carver , Cindy Chen , Nicolas Cichocki , Alicia Clum , David Culley , Pedro W Crous , Laure Fauchery , Mariangela Girlanda , Richard D Hayes , Zsófia Kéri , Kurt LaButti , Anna Lipzen , Vincent Lombard , Jon Magnuson , François Maillard , Claude Murat , Matt Nolan , Robin A Ohm , Jasmyn Pangilinan , Maíra de Freitas Pereira , Silvia Perotto , Martina Peter , Stephanie Pfister , Robert Riley , Yaron Sitrit , J Benjamin Stielow , Gergely Szöllősi , Lucia Žifčáková , Martina Štursová , Joseph W Spatafora , Leho Tedersoo , Lu-Min Vaario , Akiyoshi Yamada , Mi Yan , Pengfei Wang , Jianping Xu , Tom Bruns , Petr Baldrian , Rytas Vilgalys , Christophe Dunand , Bernard Henrissat , Igor V Grigoriev , David Hibbett , László G Nagy , Francis M Martin

Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi.

The New phytologist

Avec: Lotus A Lofgren , Nhu H Nguyen , Rytas Vilgalys , Joske Ruytinx , Hui-Ling Liao , Sara Branco , Alan Kuo , Kurt LaButti , Anna Lipzen , William Andreopoulos , Jasmyn Pangilinan , Robert Riley , Hope Hundley , Hyunsoo Na , Kerrie Barry , Igor V Grigoriev , Jason E Stajich , Peter G Kennedy

Genomic determination of breeding systems and trans-specific evolution of HD MAT genes in suilloid fungi.

Genetics

Avec: Yi-Hong Ke , Sara Branco , Anna L Bazzicalupo , Nhu H Nguyen , Hui-Ling Liao , Peter Kennedy , Thomas D Bruns , Alan Kuo , Kurt LaButti , Kerrie Barry , Igor Grigoriev , Rytas Vilgalys

Populus MYC2 orchestrates root transcriptional reprogramming of defence pathway to impair Laccaria bicolor ectomycorrhizal development.

The New phytologist

Avec: José Eduardo Marqués-Gálvez , Gaurav Pandharikar , Veronica Basso , Annegret Kohler , Nathalie D Lackus , Kerrie Barry , Keykhosrow Keymanesh , Jenifer Johnson , Vasanth Singan , Igor V Grigoriev , Rytas Vilgalys , Francis Martin , Claire Veneault-Fourrey

Fungal heavy metal adaptation through single nucleotide polymorphisms and copy-number variation.

Molecular ecology

Avec: Anna L Bazzicalupo , Joske Ruytinx , Yi-Hong Ke , Laura Coninx , Jan V Colpaert , Nhu H Nguyen , Rytas Vilgalys , Sara Branco

Spatiotemporal Transformation in the Alkaloid Profile of Pinus Roots in Response to Mycorrhization.

Journal of natural products

Avec: Dušan Veličkovic , Hui-Ling Liao , Rytas Vilgalys , Rosalie K Chu , Christopher R Anderton

Increasing access to microfluidics for studying fungi and other branched biological structures.

Fungal biology and biotechnology

Avec: Larry J Millet , Jayde Aufrecht , Jessy Labbé , Jessie Uehling , Rytas Vilgalys , Myka L Estes , Cora Miquel Guennoc , Aurélie Deveau , Stefan Olsson , Gregory Bonito , Mitchel J Doktycz , Scott T Retterer

The Early Terrestrial Fungal Lineage of

Journal of fungi (Basel, Switzerland)

Avec: Andrii P Gryganskyi , Yong Nie , Ann E Hajek , Kathie T Hodge , Xiao-Yong Liu , Kelsey Aadland , Kerstin Voigt , Iryna M Anishchenko , Vira B Kutovenko , Liudmyla Kava , Antonina Vuek , Rytas Vilgalys , Bo Huang , Jason E Stajich

Decoding the chemical language of

mSystems

Avec: Sameer Mudbhari , Lotus Lofgren , Manasa R Appidi , Rytas Vilgalys , Robert L Hettich , Paul E Abraham

Suillus: an emerging model for the study of ectomycorrhizal ecology and evolution.

The New phytologist

Avec: Lotus Lofgren , Nhu H Nguyen , Peter Kennedy , Eduardo Pérez-Pazos , Jessica Fletcher , Hui-Ling Liao , Haihua Wang , Kaile Zhang , Joske Ruytinx , Alexander H Smith , Yi-Hong Ke , H Van T Cotter , Eiona Engwall , Khalid M Hameed , Rytas Vilgalys , Sara Branco

Réseau de co-auteurs

Hui-Ling Liao 6 collaborations

Igor V Grigoriev 6 collaborations

Gregory Bonito 5 collaborations

Kerrie Barry 5 collaborations

Alan Kuo 4 collaborations

Yi-Hong Ke 4 collaborations

Nhu H Nguyen 4 collaborations

Sara Branco 4 collaborations

Jason E Stajich 3 collaborations

Lotus Lofgren 3 collaborations

Kurt LaButti 3 collaborations

Joske Ruytinx 3 collaborations

Khalid Hameed 2 collaborations

Ko-Hsuan Chen 2 collaborations

Jessy Labbé 2 collaborations

Christopher W Schadt 2 collaborations

Francis Martin 2 collaborations

Andrii P Gryganskyi 2 collaborations

Vira B Kutovenko 2 collaborations

Iryna M Anishchenko 2 collaborations

Kerstin Voigt 2 collaborations

Joseph W Spatafora 2 collaborations

Kaile Zhang 2 collaborations

Haihua Wang 2 collaborations

Keykhosrow Keymanesh 2 collaborations

Thomas D Bruns 2 collaborations

Sameer Mudbhari 2 collaborations

Manasa R Appidi 2 collaborations

Robert L Hettich 2 collaborations

Annegret Kohler 2 collaborations

Anna Lipzen 2 collaborations

Jasmyn Pangilinan 2 collaborations

Robert Riley 2 collaborations

Anna L Bazzicalupo 2 collaborations

Peter Kennedy 2 collaborations

Gian Maria Niccolò Benucci 1 collaboration

Deborah Weighill 1 collaboration

Piet Jones 1 collaboration

Daniel Jacobson 1 collaboration

Christopher Schadt 1 collaboration

Jessica M Vélez 1 collaboration

Reese M Morris 1 collaboration

Steven H Wu 1 collaboration

Jesse Labbé 1 collaboration

Gerald A Tuskan 1 collaboration

Jacob Hackman 1 collaboration

Alex Woodley 1 collaboration

David Carter 1 collaboration

Brian Strahm 1 collaboration

Collin Averill 1 collaboration

Kevin Garcia 1 collaboration

Rachel Cook 1 collaboration

Jacob Golan 1 collaboration

Anna Muszewska 1 collaboration

Alexander Idnurm 1 collaboration

Somayeh Dolatabadi 1 collaboration

Stephen J Mondo 1 collaboration

Volodymyr O Kutovenko 1 collaboration

Michael T Gajdeczka 1 collaboration

Julia Pawlowska 1 collaboration

Ngoc Vinh Tran 1 collaboration

Ingo Ebersberger 1 collaboration

Yan Wang 1 collaboration

Ying Chang 1 collaboration

Teresa E Pawlowska 1 collaboration

Joseph Heitman 1 collaboration

Gerald L Benny 1 collaboration

Matthew E Smith 1 collaboration

Nicole Reynolds 1 collaboration

Timothy Y James 1 collaboration

Ryan Tappero 1 collaboration

Jennifer M Bhatnagar 1 collaboration

Sravanthi Tejomurthula 1 collaboration

William R Kew 1 collaboration

Elizabeth K Eder 1 collaboration

Carrie D Nicora 1 collaboration

Lauren M Czaplicki 1 collaboration

Lauren K Redfern 1 collaboration

Ellen M Cooper 1 collaboration

P Lee Ferguson 1 collaboration

Claudia K Gunsch 1 collaboration

Nahuel Policelli 1 collaboration

Martin A Nuñez 1 collaboration

Edward G Barge 1 collaboration

Devin R Leopold 1 collaboration

Alejandro Rojas 1 collaboration

Posy E Busby 1 collaboration

Rachel A Swenie 1 collaboration

Brian P Looney 1 collaboration

J Alejandro Rojas 1 collaboration

Marc A Cubeta 1 collaboration

Gitta J Langer 1 collaboration

P Brandon Matheny 1 collaboration

Paul Abraham 1 collaboration

Shingo Miyauchi 1 collaboration

Enikő Kiss 1 collaboration

Elodie Drula 1 collaboration

Marisol Sánchez-García 1 collaboration

Emmanuelle Morin 1 collaboration

Bill Andreopoulos 1 collaboration

Kerrie W Barry 1 collaboration

Marc Buée 1 collaboration

Akiko Carver 1 collaboration

Cindy Chen 1 collaboration

Nicolas Cichocki 1 collaboration

Alicia Clum 1 collaboration

David Culley 1 collaboration

Pedro W Crous 1 collaboration

Laure Fauchery 1 collaboration

Mariangela Girlanda 1 collaboration

Richard D Hayes 1 collaboration

Zsófia Kéri 1 collaboration

Vincent Lombard 1 collaboration

Jon Magnuson 1 collaboration

François Maillard 1 collaboration

Claude Murat 1 collaboration

Matt Nolan 1 collaboration

Robin A Ohm 1 collaboration

Maíra de Freitas Pereira 1 collaboration

Silvia Perotto 1 collaboration

Martina Peter 1 collaboration

Stephanie Pfister 1 collaboration

Yaron Sitrit 1 collaboration

J Benjamin Stielow 1 collaboration

Gergely Szöllősi 1 collaboration

Lucia Žifčáková 1 collaboration

Martina Štursová 1 collaboration

Leho Tedersoo 1 collaboration

Lu-Min Vaario 1 collaboration

Akiyoshi Yamada 1 collaboration

Mi Yan 1 collaboration

Pengfei Wang 1 collaboration

Jianping Xu 1 collaboration

Tom Bruns 1 collaboration

Petr Baldrian 1 collaboration

Christophe Dunand 1 collaboration

Bernard Henrissat 1 collaboration

David Hibbett 1 collaboration

László G Nagy 1 collaboration

Francis M Martin 1 collaboration

Lotus A Lofgren 1 collaboration

William Andreopoulos 1 collaboration

Hope Hundley 1 collaboration

Hyunsoo Na 1 collaboration

Peter G Kennedy 1 collaboration

Igor Grigoriev 1 collaboration

José Eduardo Marqués-Gálvez 1 collaboration

Gaurav Pandharikar 1 collaboration

Veronica Basso 1 collaboration

Nathalie D Lackus 1 collaboration

Jenifer Johnson 1 collaboration

Vasanth Singan 1 collaboration

Claire Veneault-Fourrey 1 collaboration

Laura Coninx 1 collaboration

Jan V Colpaert 1 collaboration

Dušan Veličkovic 1 collaboration

Rosalie K Chu 1 collaboration

Christopher R Anderton 1 collaboration

Larry J Millet 1 collaboration

Jayde Aufrecht 1 collaboration

Jessie Uehling 1 collaboration

Myka L Estes 1 collaboration

Cora Miquel Guennoc 1 collaboration

Aurélie Deveau 1 collaboration

Stefan Olsson 1 collaboration

Mitchel J Doktycz 1 collaboration

Scott T Retterer 1 collaboration

Yong Nie 1 collaboration

Ann E Hajek 1 collaboration

Kathie T Hodge 1 collaboration

Xiao-Yong Liu 1 collaboration

Kelsey Aadland 1 collaboration

Liudmyla Kava 1 collaboration

Antonina Vuek 1 collaboration

Bo Huang 1 collaboration

Paul E Abraham 1 collaboration

Eduardo Pérez-Pazos 1 collaboration

Jessica Fletcher 1 collaboration

Alexander H Smith 1 collaboration

H Van T Cotter 1 collaboration

Eiona Engwall 1 collaboration

Khalid M Hameed 1 collaboration