A review of metrics measuring dissimilarity for rooted phylogenetic networks.
CDRPN
dissimilarity
distance
metric
rooted phylogenetic network
Journal
Briefings in bioinformatics
ISSN: 1477-4054
Titre abrégé: Brief Bioinform
Pays: England
ID NLM: 100912837
Informations de publication
Date de publication:
27 11 2019
27 11 2019
Historique:
received:
22
05
2018
revised:
20
06
2018
pubmed:
19
7
2018
medline:
2
9
2020
entrez:
19
7
2018
Statut:
ppublish
Résumé
A rooted phylogenetic network is an important structure in the description of evolutionary relationships. Computing the distance (topological dissimilarity) between two rooted phylogenetic networks is a fundamental in phylogenic analysis. During the past few decades, several polynomial-time computable metrics have been described. Here, we give a comprehensive review and analysis on those metrics, including the correlation among metrics and the distribution of distance values computed by each metric. Moreover, we describe the software and website, CDRPN (Computing Distance for Rooted Phylogenetic Networks), for measuring the topological dissimilarity between rooted phylogenetic networks. http://bioinformatics.imu.edu.cn/distance/. guomaozu@bucea.edu.cn.
Identifiants
pubmed: 30020404
pii: 5055373
doi: 10.1093/bib/bby062
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Review
Langues
eng
Sous-ensembles de citation
IM
Pagination
1972-1980Informations de copyright
© The Author(s) 2018. Published by Oxford University Press. All rights reserved. For permissions, please email: journals.permissions@oup.com.