Applying Artificial Intelligence to Address the Knowledge Gaps in Cancer Care.


Journal

The oncologist
ISSN: 1549-490X
Titre abrégé: Oncologist
Pays: England
ID NLM: 9607837

Informations de publication

Date de publication:
06 2019
Historique:
received: 30 04 2018
accepted: 28 09 2018
pubmed: 18 11 2018
medline: 21 7 2020
entrez: 18 11 2018
Statut: ppublish

Résumé

Rapid advances in science challenge the timely adoption of evidence-based care in community settings. To bridge the gap between what is possible and what is practiced, we researched approaches to developing an artificial intelligence (AI) application that can provide real-time patient-specific decision support. The Oncology Expert Advisor (OEA) was designed to simulate peer-to-peer consultation with three core functions: patient history summarization, treatment options recommendation, and management advisory. Machine-learning algorithms were trained to construct a dynamic summary of patients cancer history and to suggest approved therapy or investigative trial options. All patient data used were retrospectively accrued. Ground truth was established for approximately 1,000 unique patients. The full Medline database of more than 23 million published abstracts was used as the literature corpus. OEA's accuracies of searching disparate sources within electronic medical records to extract complex clinical concepts from unstructured text documents varied, with F1 scores of 90%-96% for non-time-dependent concepts (e.g., diagnosis) and F1 scores of 63%-65% for time-dependent concepts (e.g., therapy history timeline). Based on constructed patient profiles, OEA suggests approved therapy options linked to supporting evidence (99.9% recall; 88% precision), and screens for eligible clinical trials on ClinicalTrials.gov (97.9% recall; 96.9% precision). Our results demonstrated technical feasibility of an AI-powered application to construct longitudinal patient profiles in context and to suggest evidence-based treatment and trial options. Our experience highlighted the necessity of collaboration across clinical and AI domains, and the requirement of clinical expertise throughout the process, from design to training to testing. Artificial intelligence (AI)-powered digital advisors such as the Oncology Expert Advisor have the potential to augment the capacity and update the knowledge base of practicing oncologists. By constructing dynamic patient profiles from disparate data sources and organizing and vetting vast literature for relevance to a specific patient, such AI applications could empower oncologists to consider all therapy options based on the latest scientific evidence for their patients, and help them spend less time on information "hunting and gathering" and more time with the patients. However, realization of this will require not only AI technology maturation but also active participation and leadership by clincial experts.

Sections du résumé

BACKGROUND
Rapid advances in science challenge the timely adoption of evidence-based care in community settings. To bridge the gap between what is possible and what is practiced, we researched approaches to developing an artificial intelligence (AI) application that can provide real-time patient-specific decision support.
MATERIALS AND METHODS
The Oncology Expert Advisor (OEA) was designed to simulate peer-to-peer consultation with three core functions: patient history summarization, treatment options recommendation, and management advisory. Machine-learning algorithms were trained to construct a dynamic summary of patients cancer history and to suggest approved therapy or investigative trial options. All patient data used were retrospectively accrued. Ground truth was established for approximately 1,000 unique patients. The full Medline database of more than 23 million published abstracts was used as the literature corpus.
RESULTS
OEA's accuracies of searching disparate sources within electronic medical records to extract complex clinical concepts from unstructured text documents varied, with F1 scores of 90%-96% for non-time-dependent concepts (e.g., diagnosis) and F1 scores of 63%-65% for time-dependent concepts (e.g., therapy history timeline). Based on constructed patient profiles, OEA suggests approved therapy options linked to supporting evidence (99.9% recall; 88% precision), and screens for eligible clinical trials on ClinicalTrials.gov (97.9% recall; 96.9% precision).
CONCLUSION
Our results demonstrated technical feasibility of an AI-powered application to construct longitudinal patient profiles in context and to suggest evidence-based treatment and trial options. Our experience highlighted the necessity of collaboration across clinical and AI domains, and the requirement of clinical expertise throughout the process, from design to training to testing.
IMPLICATIONS FOR PRACTICE
Artificial intelligence (AI)-powered digital advisors such as the Oncology Expert Advisor have the potential to augment the capacity and update the knowledge base of practicing oncologists. By constructing dynamic patient profiles from disparate data sources and organizing and vetting vast literature for relevance to a specific patient, such AI applications could empower oncologists to consider all therapy options based on the latest scientific evidence for their patients, and help them spend less time on information "hunting and gathering" and more time with the patients. However, realization of this will require not only AI technology maturation but also active participation and leadership by clincial experts.

Identifiants

pubmed: 30446581
pii: theoncologist.2018-0257
doi: 10.1634/theoncologist.2018-0257
pmc: PMC6656515
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

772-782

Subventions

Organisme : NCI NIH HHS
ID : P30 CA016672
Pays : United States

Informations de copyright

© AlphaMed Press 2018.

Déclaration de conflit d'intérêts

Disclosures of potential conflicts of interest may be found at the end of this article.

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Auteurs

George Simon (G)

Department of Thoracic/Head and Neck Medical Oncology, MD Anderson Cancer Center, Houston, Texas, USA.

Courtney D DiNardo (CD)

Department of Leukemia, MD Anderson Cancer Center, Houston, Texas, USA.

Koichi Takahashi (K)

Department of Leukemia, MD Anderson Cancer Center, Houston, Texas, USA.

Tina Cascone (T)

Department of Thoracic/Head and Neck Medical Oncology, MD Anderson Cancer Center, Houston, Texas, USA.

Cynthia Powers (C)

Department of Leukemia, MD Anderson Cancer Center, Houston, Texas, USA.

Rick Stevens (R)

IBM Watson Health, Cambridge, Massachusetts, USA.

Joshua Allen (J)

IBM Watson, New York New York, USA.

Mara B Antonoff (MB)

Department of Thoracic & Cardiovascular Surgery, MD Anderson Cancer Center, Houston, Texas, USA.

Daniel Gomez (D)

Department of Radiation Oncology, MD Anderson Cancer Center, Houston, Texas, USA.

Pat Keane (P)

IBM Watson Health, Cambridge, Massachusetts, USA.

Fernando Suarez Saiz (F)

IBM Watson Health, Cambridge, Massachusetts, USA.

Quynh Nguyen (Q)

Department of Thoracic/Head and Neck Medical Oncology, MD Anderson Cancer Center, Houston, Texas, USA.

Emily Roarty (E)

Department of Thoracic/Head and Neck Medical Oncology, MD Anderson Cancer Center, Houston, Texas, USA.

Sherry Pierce (S)

Department of Leukemia, MD Anderson Cancer Center, Houston, Texas, USA.

Jianjun Zhang (J)

Department of Thoracic/Head and Neck Medical Oncology, MD Anderson Cancer Center, Houston, Texas, USA.

Emily Hardeman Barnhill (E)

Department of Leukemia, MD Anderson Cancer Center, Houston, Texas, USA.

Kate Lakhani (K)

Department of Leukemia, MD Anderson Cancer Center, Houston, Texas, USA.

Kenna Shaw (K)

Department of Genomic Medicine, MD Anderson Cancer Center, Houston, Texas, USA.

Brett Smith (B)

Department of Genomic Medicine, MD Anderson Cancer Center, Houston, Texas, USA.

Stephen Swisher (S)

Department of Thoracic & Cardiovascular Surgery, MD Anderson Cancer Center, Houston, Texas, USA.

Rob High (R)

IBM Watson, New York New York, USA.

P Andrew Futreal (PA)

Department of Genomic Medicine, MD Anderson Cancer Center, Houston, Texas, USA.

John Heymach (J)

Department of Thoracic/Head and Neck Medical Oncology, MD Anderson Cancer Center, Houston, Texas, USA.

Lynda Chin (L)

Department of Genomic Medicine, MD Anderson Cancer Center, Houston, Texas, USA lchin@utsystem.edu.

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Classifications MeSH